Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:secretory granule organization
go back to main search page
Accession:GO:0033363 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.
Synonyms:exact_synonym: secretory granule organisation
 related_synonym: secretory granule organization and biogenesis


show annotations for term's descendants           Sort by:
 
secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO (MGI:3805139|PMID:18511498) RGD PMID:18511498 MGI:3805139 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO MGI:4999627 (MGI:4950818|PMID:21408140) RGD PMID:21408140 MGI:4950818 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (MGI:3617736|PMID:11889581) RGD PMID:11889581 MGI:3617736 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901 		JBrowse link
G Mta1 metastasis associated 1 involved_in IDA PMID:10933808 UniProt PMID:10933808 RGD:8554658 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641 		JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 (MGI:3654805|PMID:16319172)
GO_REF:0000107		 RGD
Ensembl		 PMID:16319172 PMID:16319172 GO_REF:0000107 MGI:3654805, RGD:2317924 NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826 		JBrowse link
G Srgn serglycin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
acrosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acrbp acrosin binding protein involved_in ISS
ISO		 GO_REF:0000024
(MGI:5789676|PMID:27303034)		 UniProt
RGD		 PMID:27303034 GO_REF:0000024 MGI:5789676 NCBI chr 4:157,851,149...157,864,211
Ensembl chr 4:157,841,841...157,864,213 		JBrowse link
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within ISO MGI:2182772 (MGI:2153561|PMID:11711676), (MGI:3040020|PMID:14724135) RGD PMID:11711676 PMID:14724135 MGI:2153561 MGI:3040020 NCBI chr 9:84,124,878...84,178,149
Ensembl chr 9:84,125,120...84,178,128 		JBrowse link
G Ccdc136 coiled-coil domain containing 136 involved_in ISO
IBA		 (MGI:5816406|PMID:27076447)
PMID:21873635		 RGD PMID:27076447 PMID:21873635 MGI:5816406, RGD:13792537 NCBI chr 4:57,997,825...58,027,598
Ensembl chr 4:57,997,853...58,027,646 		JBrowse link
G Chn2 chimerin 2 IEP RGD PMID:8440677 RGD:724725 NCBI chr 4:83,148,616...83,407,711
Ensembl chr 4:83,147,983...83,407,709 		JBrowse link
G Fabp9 fatty acid binding protein 9 IEP RGD PMID:7958448 RGD:634410 NCBI chr 2:91,591,842...91,595,873
Ensembl chr 2:91,592,298...91,595,873 		JBrowse link
G LOC100294508 dyslexia susceptibility 2-like acts_upstream_of_or_within ISO MGI:6111779 (MGI:6198830|PMID:29991750) RGD PMID:29991750 MGI:6198830 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (MGI:5763056|PMID:27107036) RGD PMID:27107036 MGI:5763056 NCBI chr 2:204,579,174...204,611,600 JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2183405 (MGI:1354802|PMID:10733589)		 RGD PMID:10733589 PMID:21873635 MGI:1354802, RGD:13792537 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2683481 (MGI:2681371|PMID:13129914) RGD PMID:13129914 MGI:2681371 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pla2g3 phospholipase A2, group III acts_upstream_of_or_within ISO MGI:4461174 (MGI:4459354|PMID:20424323) RGD PMID:20424323 MGI:4459354 NCBI chr14:78,367,625...78,373,913
Ensembl chr14:78,368,105...78,373,913 		JBrowse link
G Rfx2 regulatory factor X2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5708804|PMID:26162102)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26162102 GO_REF:0000024 GO_REF:0000107 MGI:5708804 NCBI chr 9:1,604,636...1,671,220
Ensembl chr 9:1,604,646...1,671,027 		JBrowse link
G Sec23ip SEC23 interacting protein acts_upstream_of_or_within ISO MGI:5085903 (MGI:5052222|PMID:21640725) RGD PMID:21640725 MGI:5052222 NCBI chr 1:183,320,950...183,363,944
Ensembl chr 1:183,321,075...183,363,920 		JBrowse link
G Spaca1 sperm acrosome associated 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5439282 (MGI:5437786|PMID:22949614)		 RGD PMID:22949614 PMID:21873635 MGI:5437786, RGD:13792537 NCBI chr 5:48,525,406...48,540,676
Ensembl chr 5:48,525,406...48,540,711 		JBrowse link
G Spink2 serine peptidase inhibitor, Kazal type 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6114299|PMID:28554943)		 UniProt
RGD		 PMID:28554943 GO_REF:0000024 MGI:6114299 NCBI chr14:30,967,682...30,974,326
Ensembl chr14:30,967,714...30,974,326 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:5551670 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (MGI:4849617|PMID:20691678) RGD PMID:20691678 MGI:4849617 NCBI chr 4:129,759,952...129,785,705
Ensembl chr 4:129,763,114...129,785,629 		JBrowse link
G Txndc8 thioredoxin domain containing 8 IEP RGD PMID:15181017 RGD:1303999 NCBI chr 5:72,749,725...72,785,858
Ensembl chr 5:72,749,725...72,785,931 		JBrowse link
G Zpbp zona pellucida binding protein involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3762589 (MGI:3761850|PMID:17664285)		 RGD PMID:17664285 PMID:21873635 MGI:3761850, RGD:13792537 NCBI chr14:85,830,971...86,030,778
Ensembl chr14:85,833,548...86,033,095 		JBrowse link
G Zpbp2 zona pellucida binding protein 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3762590 (MGI:3761850|PMID:17664285)		 RGD PMID:17664285 PMID:21873635 MGI:3761850, RGD:13792537 NCBI chr10:83,558,772...83,567,511
Ensembl chr10:83,559,016...83,567,508 		JBrowse link
dense core granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap3 BAI1-associated protein 3 involved_in ISO (PMID:28626000) RGD PMID:28626000 NCBI chr10:14,260,269...14,273,019
Ensembl chr10:14,260,269...14,273,019 		JBrowse link
G Ptprn protein tyrosine phosphatase, receptor type, N involved_in ISO UniProtKB:Q6P4T1 (PMID:24843546) RGD PMID:24843546 NCBI chr 9:76,741,010...76,756,704
Ensembl chr 9:76,741,016...76,756,190 		JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 ISO UniProtKB:Q6P4T1 (PMID:24843546)
(MGI:5605377|PMID:24843546)		 RGD PMID:24843546 MGI:5605377 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061 		JBrowse link
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3717516|PMID:16046402)		 UniProt
RGD		 PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3762431|PMID:17010166)		 UniProt
RGD		 PMID:17010166 GO_REF:0000024 MGI:3762431 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
mast cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (MGI:54412|PMID:624833) RGD PMID:624833 MGI:54412 NCBI chr17:86,241,384...86,443,501 JBrowse link
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3056870|PMID:15231821)		 UniProt
RGD		 PMID:15231821 GO_REF:0000024 MGI:3056870 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
platelet alpha granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nbeal2 neurobeachin-like 2 acts_upstream_of_or_within ISO MGI:4461705|MGI:5007262 (MGI:5514081|PMID:23863626), (MGI:5528579|PMID:23861251), (MGI:5636146|PMID:25258341) RGD PMID:23861251 PMID:23863626 PMID:25258341 MGI:5514081 MGI:5528579 MGI:5636146 NCBI chr 8:110,603,220...110,633,612
Ensembl chr 8:110,599,389...110,633,707 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:16123220)
(MGI:5645581|PMID:25947942)		 RGD PMID:16123220 PMID:25947942 MGI:5645581 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (MGI:3505817|PMID:11927637) RGD PMID:11927637 MGI:3505817 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
platelet dense granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) RGD PMID:15163665 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (MGI:1330543|PMID:9931340) RGD PMID:9931340 MGI:1330543 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3522060|PMID:15265785) RGD PMID:15265785 MGI:3522060 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO MGI:1856982 (MGI:6460636|PMID:32929010) RGD PMID:32929010 MGI:6460636 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1856628 (MGI:50482|PMID:1936982)		 RGD PMID:1936982 PMID:21873635 MGI:50482, RGD:13792537 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Rab38 RAB38, member RAS oncogene family IMP RGD PMID:18983523 RGD:2324691 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
G Unc13d unc-13 homolog D involved_in ISO MGI:3628822 (MGI:6460636|PMID:32929010) RGD PMID:32929010 MGI:6460636 NCBI chr10:101,296,755...101,311,513
Ensembl chr10:101,296,776...101,311,687 		JBrowse link
positive regulation of secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 IMP RGD PMID:29540530 RGD:41404656 NCBI chr20:9,126,687...9,182,948
Ensembl chr20:9,126,687...9,182,948 		JBrowse link
G Osbp oxysterol binding protein IMP RGD PMID:29540530 RGD:41404656 NCBI chr 1:208,888,697...208,918,511
Ensembl chr 1:208,887,895...208,918,506 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
proacrosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100294508 dyslexia susceptibility 2-like acts_upstream_of_or_within ISO MGI:6111779 (MGI:6198830|PMID:29991750) RGD PMID:29991750 MGI:6198830 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715 		JBrowse link
G Sox30 SRY-box transcription factor 30 involved_in ISO (MGI:6191912|PMID:29866902) RGD PMID:29866902 MGI:6191912 NCBI chr10:30,417,499...30,446,441
Ensembl chr10:30,418,473...30,446,453 		JBrowse link
secretory granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
T cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3717516|PMID:16046402)		 UniProt
RGD		 PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    cellular process 18252
      cellular component organization or biogenesis 6492
        cellular component organization 6250
          endomembrane system organization 507
            secretory granule organization 45
              T cell secretory granule organization + 1
              acrosome assembly + 21
              dense core granule organization + 0
              mast cell secretory granule organization + 2
              negative regulation of secretory granule organization 0
              platelet alpha granule organization 3
              platelet dense granule organization 7
              positive regulation of secretory granule organization 3
              regulation of secretory granule organization + 3
              secretory granule maturation + 4
Path 2
Term Annotations click to browse term
  biological_process 19390
    cellular process 18252
      cellular component organization or biogenesis 6492
        cellular component organization 6250
          organelle organization 3788
            vesicle organization 305
              secretory granule organization 45
                T cell secretory granule organization + 1
                acrosome assembly + 21
                dense core granule organization + 0
                mast cell secretory granule organization + 2
                negative regulation of secretory granule organization 0
                platelet alpha granule organization 3
                platelet dense granule organization 7
                positive regulation of secretory granule organization 3
                regulation of secretory granule organization + 3
                secretory granule maturation + 4
paths to the root