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ONTOLOGY REPORT - ANNOTATIONS

Term:secretory granule organization
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Accession:GO:0033363 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.
Synonyms:exact_synonym: secretory granule organisation
 related_synonym: secretory granule organization and biogenesis


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secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO (MGI:3805139|PMID:18511498) RGD PMID:18511498 MGI:3805139 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO MGI:4999627 (MGI:4950818|PMID:21408140) RGD PMID:21408140 MGI:4950818 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (MGI:3617736|PMID:11889581) RGD PMID:11889581 MGI:3617736 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901 		JBrowse link
G Mta1 metastasis associated 1 involved_in IDA PMID:10933808 UniProt PMID:10933808 RGD:8554658 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641 		JBrowse link
G Serpine2 serpin family E member 2 acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 (MGI:3654805|PMID:16319172)
GO_REF:0000107		 RGD
Ensembl		 PMID:16319172 PMID:16319172 GO_REF:0000107 MGI:3654805, RGD:2317924 NCBI chr 9:81,124,746...81,188,866
Ensembl chr 9:81,124,804...81,188,826 		JBrowse link
G Srgn serglycin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
acrosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acrbp acrosin binding protein involved_in ISS
ISO		 GO_REF:0000024
(MGI:5789676|PMID:27303034)		 UniProt
RGD		 PMID:27303034 GO_REF:0000024 MGI:5789676 NCBI chr 4:157,851,149...157,864,211
Ensembl chr 4:157,841,841...157,864,213 		JBrowse link
G Actl7a actin-like 7a involved_in ISO
ISS		 (MGI:6790748|PMID:32923619)
GO_REF:0000024		 RGD
UniProt		 PMID:32923619 GO_REF:0000024 MGI:6790748 NCBI chr 5:71,447,447...71,450,440
Ensembl chr 5:71,447,071...71,450,908 		JBrowse link
G Actl9 actin-like 9 involved_in ISO (PMID:33626338)
(MGI:6515844|PMID:33626338)		 RGD PMID:33626338 MGI:6515844 NCBI chr 7:14,234,504...14,235,881
Ensembl chr 7:14,234,504...14,235,881 		JBrowse link
G Actl9b actin-like 9b involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:63,830,481...63,831,818
Ensembl chr 1:63,830,223...63,831,822 		JBrowse link
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2182772 (MGI:2153561|PMID:11711676), (MGI:3040020|PMID:14724135)
PMID:21873635		 RGD PMID:11711676 PMID:14724135 PMID:21873635 MGI:2153561 MGI:3040020, RGD:13792537 NCBI chr 9:84,124,878...84,178,149
Ensembl chr 9:84,125,120...84,178,128 		JBrowse link
G Ccdc136 coiled-coil domain containing 136 involved_in ISO
IBA		 (MGI:5816406|PMID:27076447)
PMID:21873635		 RGD PMID:27076447 PMID:21873635 MGI:5816406, RGD:13792537 NCBI chr 4:57,997,825...58,027,598
Ensembl chr 4:57,997,853...58,027,646 		JBrowse link
G Chn2 chimerin 2 IEP RGD PMID:8440677 RGD:724725 NCBI chr 4:83,148,616...83,407,711
Ensembl chr 4:83,147,983...83,407,709 		JBrowse link
G Fabp9 fatty acid binding protein 9 IEP RGD PMID:7958448 RGD:634410 NCBI chr 2:91,591,842...91,595,873
Ensembl chr 2:91,592,298...91,595,873 		JBrowse link
G Fam209 family with sequence similarity 209 involved_in ISO (MGI:6865809|PMID:34471926) RGD PMID:34471926 MGI:6865809 NCBI chr 3:161,240,062...161,241,747
Ensembl chr 3:161,240,034...161,241,755 		JBrowse link
G Garin1a golgi associated RAB2 interactor 1A involved_in ISS
ISO		 GO_REF:0000024
(MGI:6814641|PMID:34714330)		 UniProt
RGD		 PMID:34714330 GO_REF:0000024 MGI:6814641 NCBI chr 4:57,880,019...57,890,824
Ensembl chr 4:57,880,019...57,890,820 		JBrowse link
G Garin1b golgi associated RAB2 interactor 1B involved_in ISS
ISO		 GO_REF:0000024
(MGI:6814641|PMID:34714330)		 UniProt
RGD		 PMID:34714330 GO_REF:0000024 MGI:6814641 NCBI chr 4:57,915,184...57,938,593
Ensembl chr 4:57,920,790...57,938,591 		JBrowse link
G LOC100294508 dyslexia susceptibility 2-like acts_upstream_of_or_within ISO MGI:6111779 (MGI:6198830|PMID:29991750) RGD PMID:29991750 MGI:6198830 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (MGI:5763056|PMID:27107036) RGD PMID:27107036 MGI:5763056 NCBI chr 2:204,579,174...204,611,600
Ensembl chr 2:204,579,174...204,659,319 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2183405 (MGI:1354802|PMID:10733589)		 RGD PMID:10733589 PMID:21873635 MGI:1354802, RGD:13792537 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 acts_upstream_of_or_within ISO MGI:2683481 (MGI:2681371|PMID:13129914) RGD PMID:13129914 MGI:2681371 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808 		JBrowse link
G Pla2g3 phospholipase A2, group III acts_upstream_of_or_within ISO MGI:4461174 (MGI:4459354|PMID:20424323) RGD PMID:20424323 MGI:4459354 NCBI chr14:78,367,625...78,373,913
Ensembl chr14:78,368,105...78,373,913 		JBrowse link
G Rfx2 regulatory factor X2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5708804|PMID:26162102)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26162102 GO_REF:0000024 GO_REF:0000107 MGI:5708804 NCBI chr 9:1,604,636...1,671,220
Ensembl chr 9:1,604,646...1,671,027 		JBrowse link
G Sec23ip SEC23 interacting protein acts_upstream_of_or_within ISO MGI:5085903 (MGI:5052222|PMID:21640725) RGD PMID:21640725 MGI:5052222 NCBI chr 1:183,320,950...183,363,944
Ensembl chr 1:183,321,075...183,363,920 		JBrowse link
G Spaca1 sperm acrosome associated 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:5439282 (MGI:5437786|PMID:22949614)		 RGD PMID:22949614 PMID:21873635 MGI:5437786, RGD:13792537 NCBI chr 5:48,525,406...48,540,676
Ensembl chr 5:48,525,406...48,540,711 		JBrowse link
G Spink2 serine peptidase inhibitor, Kazal type 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6114299|PMID:28554943)		 UniProt
RGD		 PMID:28554943 GO_REF:0000024 MGI:6114299 NCBI chr14:30,967,682...30,974,326
Ensembl chr14:30,967,714...30,974,326 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:5551670 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (MGI:4849617|PMID:20691678) RGD PMID:20691678 MGI:4849617 NCBI chr 4:129,759,952...129,785,705
Ensembl chr 4:129,763,114...129,785,629 		JBrowse link
G Txndc8 thioredoxin domain containing 8 IEP RGD PMID:15181017 RGD:1303999 NCBI chr 5:72,749,725...72,785,858
Ensembl chr 5:72,749,725...72,785,931 		JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B involved_in ISO (MGI:6467831|PMID:31218450) RGD PMID:31218450 MGI:6467831 NCBI chr 7:66,557,862...67,128,429
Ensembl chr 7:66,558,471...67,128,429 		JBrowse link
G Zpbp zona pellucida binding protein acts_upstream_of_or_within ISO MGI:3762589 (MGI:3761850|PMID:17664285) RGD PMID:17664285 MGI:3761850 NCBI chr14:85,830,971...86,030,778
Ensembl chr14:85,833,548...86,033,095 		JBrowse link
G Zpbp2 zona pellucida binding protein 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3762590 (MGI:3761850|PMID:17664285)		 RGD PMID:17664285 PMID:21873635 MGI:3761850, RGD:13792537 NCBI chr10:83,558,772...83,567,511
Ensembl chr10:83,559,016...83,567,508 		JBrowse link
dense core granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baiap3 BAI1-associated protein 3 involved_in ISO (PMID:28626000) RGD PMID:28626000 NCBI chr10:14,260,269...14,273,019
Ensembl chr10:14,260,269...14,273,019 		JBrowse link
G Ptprn protein tyrosine phosphatase, receptor type, N involved_in ISO UniProtKB:Q6P4T1 (PMID:24843546) RGD PMID:24843546 NCBI chr 9:76,741,010...76,756,704
Ensembl chr 9:76,741,016...76,756,190 		JBrowse link
G Snx19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 ISO UniProtKB:Q6P4T1 (PMID:24843546)
(MGI:5605377|PMID:24843546)		 RGD PMID:24843546 MGI:5605377 NCBI chr 8:28,829,881...28,867,600
Ensembl chr 8:28,829,886...28,867,061 		JBrowse link
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3717516|PMID:16046402)		 UniProt
RGD		 PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3762431|PMID:17010166)		 UniProt
RGD		 PMID:17010166 GO_REF:0000024 MGI:3762431 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
mast cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (MGI:54412|PMID:624833) RGD PMID:624833 MGI:54412 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480 		JBrowse link
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3056870|PMID:15231821)		 UniProt
RGD		 PMID:15231821 GO_REF:0000024 MGI:3056870 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
platelet alpha granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nbeal2 neurobeachin-like 2 acts_upstream_of_or_within ISO MGI:4461705|MGI:5007262 (MGI:5514081|PMID:23863626), (MGI:5528579|PMID:23861251), (MGI:5636146|PMID:25258341) RGD PMID:23861251 PMID:23863626 PMID:25258341 MGI:5514081 MGI:5528579 MGI:5636146 NCBI chr 8:110,603,220...110,633,612
Ensembl chr 8:110,599,389...110,633,707 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:16123220)
(MGI:5645581|PMID:25947942)		 RGD PMID:16123220 PMID:25947942 MGI:5645581 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (MGI:3505817|PMID:11927637) RGD PMID:11927637 MGI:3505817 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
platelet dense granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) RGD PMID:15163665 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170 		JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (MGI:1330543|PMID:9931340) RGD PMID:9931340 MGI:1330543 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3522060|PMID:15265785) RGD PMID:15265785 MGI:3522060 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1856628 (MGI:50482|PMID:1936982)		 RGD PMID:1936982 PMID:21873635 MGI:50482, RGD:13792537 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Rab38 RAB38, member RAS oncogene family IMP RGD PMID:18983523 RGD:2324691 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
positive regulation of secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg1 ATP binding cassette subfamily G member 1 IMP RGD PMID:29540530 RGD:41404656 NCBI chr20:9,126,687...9,182,948
Ensembl chr20:9,126,687...9,182,948 		JBrowse link
G Osbp oxysterol binding protein IMP RGD PMID:29540530 RGD:41404656 NCBI chr 1:208,888,697...208,918,511
Ensembl chr 1:208,887,895...208,918,506 		JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:9,842,574...9,852,332
Ensembl chr 7:9,842,574...9,852,397 		JBrowse link
proacrosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100294508 dyslexia susceptibility 2-like acts_upstream_of_or_within ISO MGI:6111779 (MGI:6198830|PMID:29991750) RGD PMID:29991750 MGI:6198830 NCBI chr 5:139,047,847...139,140,709
Ensembl chr 5:139,046,143...139,140,715 		JBrowse link
G Sox30 SRY-box transcription factor 30 involved_in ISO (MGI:6191912|PMID:29866902) RGD PMID:29866902 MGI:6191912 NCBI chr10:30,417,499...30,446,441
Ensembl chr10:30,418,473...30,446,453 		JBrowse link
secretory granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in IMP PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
T cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgn serglycin involved_in ISS
ISO		 GO_REF:0000024
(MGI:3717516|PMID:16046402)		 UniProt
RGD		 PMID:16046402 GO_REF:0000024 MGI:3717516 NCBI chr20:30,442,810...30,479,549
Ensembl chr20:30,442,813...30,457,406 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          endomembrane system organization 537
            secretory granule organization 50
              T cell secretory granule organization + 1
              acrosome assembly + 28
              dense core granule organization + 0
              mast cell secretory granule organization + 2
              negative regulation of secretory granule organization 0
              platelet alpha granule organization 3
              platelet dense granule organization 5
              positive regulation of secretory granule organization 3
              regulation of secretory granule organization + 3
              secretory granule maturation + 4
Path 2
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          organelle organization 3900
            vesicle organization 305
              secretory granule organization 50
                T cell secretory granule organization + 1
                acrosome assembly + 28
                dense core granule organization + 0
                mast cell secretory granule organization + 2
                negative regulation of secretory granule organization 0
                platelet alpha granule organization 3
                platelet dense granule organization 5
                positive regulation of secretory granule organization 3
                regulation of secretory granule organization + 3
                secretory granule maturation + 4
paths to the root