Snap25 (synaptosome associated protein 25) - Rat Genome Database

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Gene: Snap25 (synaptosome associated protein 25) Rattus norvegicus
Analyze
Symbol: Snap25
Name: synaptosome associated protein 25
RGD ID: 3728
Description: Enables several functions, including calcium-dependent protein binding activity; syntaxin-1 binding activity; and transmembrane transporter binding activity. Involved in several processes, including SNARE complex assembly; long-term memory; and positive regulation of insulin secretion. Located in several cellular components, including axonal growth cone; lamellipodium; and presynaptic active zone membrane. Part of several cellular components, including synaptobrevin 2-SNAP-25-syntaxin-1a complex; synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex; and synaptobrevin 2-SNAP-25-syntaxin-1a-complexin II complex. Is active in glutamatergic synapse and presynaptic membrane. Is extrinsic component of presynaptic membrane. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25); PARTICIPATES IN insulin secretion pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MGC105414; SNAP-25; SNAP-25a; SNAP-25B; SUP; super protein; Synaptosomal-accosiated protein, 25 kDa; synaptosomal-associated 25 kDa protein; synaptosomal-associated protein; synaptosomal-associated protein 25; Synaptosomal-associated protein 25 kDa; synaptosomal-associated protein, 25 kDa
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83144,494,579 - 144,576,449 (+)NCBIGRCr8
mRatBN7.23124,041,898 - 124,123,761 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3124,041,898 - 124,123,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3127,931,004 - 128,009,819 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03136,507,987 - 136,586,804 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03134,186,617 - 134,271,659 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03129,697,408 - 129,788,417 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3129,599,353 - 129,788,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03136,182,051 - 136,269,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43124,806,637 - 124,894,653 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13124,712,177 - 124,800,221 (+)NCBI
Celera3122,761,455 - 122,842,679 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2,2-tetramine  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-aminopyridine  (EXP)
6-propyl-2-thiouracil  (EXP)
8-(4-chlorophenylthio)-cAMP  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Botulinum toxin type A  (EXP,ISO)
C60 fullerene  (EXP)
cadmium dichloride  (ISO)
caffeine  (EXP)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (EXP,ISO)
clozapine  (EXP,ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cypermethrin  (EXP)
D-glucose  (EXP)
DDE  (EXP)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
dichlorine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (EXP)
fisetin  (ISO)
flavonoids  (EXP)
glucose  (EXP)
haloperidol  (EXP,ISO)
heroin  (ISO)
hydrazines  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
Lappaconitine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylamine  (ISO)
methylmercury chloride  (ISO)
methylphenidate  (ISO)
methylseleninic acid  (ISO)
minocycline  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
nitrofen  (EXP)
Nonylphenol  (EXP)
olanzapine  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paraquat  (ISO)
PCB138  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
potassium chloride  (EXP)
potassium dichromate  (ISO)
pravastatin  (ISO)
propofol  (EXP)
risperidone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thalidomide  (EXP)
thimerosal  (EXP)
trichostatin A  (EXP,ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A second SNARE role for exocytic SNAP25 in endosome fusion. Aikawa Y, etal., Mol Biol Cell. 2006 May;17(5):2113-24. Epub 2006 Feb 15.
2. Imaging the assembly and disassembly kinetics of cis-SNARE complexes on native plasma membranes. Bar-On D, etal., FEBS Lett. 2008 Oct 15;582(23-24):3563-8. doi: 10.1016/j.febslet.2008.08.040. Epub 2008 Sep 24.
3. Sleep deprivation-induced protein changes in basal forebrain: implications for synaptic plasticity. Basheer R, etal., J Neurosci Res. 2005 Dec 1;82(5):650-8.
4. The specificity of SNARE pairing in biological membranes is mediated by both proof-reading and spatial segregation. Bethani I, etal., EMBO J. 2007 Sep 5;26(17):3981-92. Epub 2007 Aug 23.
5. Botulinum neurotoxin A selectively cleaves the synaptic protein SNAP-25. Blasi J, etal., Nature. 1993 Sep 9;365(6442):160-3. doi: 10.1038/365160a0.
6. Munc18a controls SNARE assembly through its interaction with the syntaxin N-peptide. Burkhardt P, etal., EMBO J. 2008 Apr 9;27(7):923-33. doi: 10.1038/emboj.2008.37. Epub 2008 Mar 13.
7. Structural characterization of full-length NSF and 20S particles. Chang LF, etal., Nat Struct Mol Biol. 2012 Feb 5;19(3):268-75. doi: 10.1038/nsmb.2237.
8. Cellubrevin and synaptobrevins: similar subcellular localization and biochemical properties in PC12 cells. Chilcote TJ, etal., J Cell Biol. 1995 Apr;129(1):219-31.
9. SNIP, a novel SNAP-25-interacting protein implicated in regulated exocytosis. Chin LS, etal., J Biol Chem 2000 Jan 14;275(2):1191-200.
10. Single-molecule FRET-derived model of the synaptotagmin 1-SNARE fusion complex. Choi UB, etal., Nat Struct Mol Biol. 2010 Mar;17(3):318-24. doi: 10.1038/nsmb.1763. Epub 2010 Feb 21.
11. Expression of two membrane fusion proteins, synaptosome-associated protein of 25 kDa and vesicle-associated membrane protein, in choroid plexus epithelium. Chung I, etal., Neuroscience 2003;116(2):349-57.
12. Direct interaction of the rab3 effector rim with ca2+ channels, snap-25, and synaptotagmin. Coppola T, etal., J Biol Chem 2001 Aug 31;276(35):32756-62.
13. Omega-3 and omega-6 fatty acids stimulate cell membrane expansion by acting on syntaxin 3. Darios F and Davletov B, Nature. 2006 Apr 6;440(7085):813-7.
14. Alpha-synuclein sequesters arachidonic acid to modulate SNARE-mediated exocytosis. Darios F, etal., EMBO Rep. 2010 Jul;11(7):528-33. doi: 10.1038/embor.2010.66. Epub 2010 May 21.
15. Munc18-1 and the Syntaxin-1 N Terminus Regulate Open-Closed States in a t-SNARE Complex. Dawidowski D and Cafiso DS, Structure. 2016 Mar 1;24(3):392-400. doi: 10.1016/j.str.2016.01.005. Epub 2016 Feb 11.
16. Rabphilin regulates SNARE-dependent re-priming of synaptic vesicles for fusion. Deak F, etal., EMBO J. 2006 Jun 21;25(12):2856-66. Epub 2006 Jun 8.
17. miR-29a modulates neuronal differentiation through targeting REST in mesenchymal stem cells. Duan P, etal., PLoS One. 2014 May 19;9(5):e97684. doi: 10.1371/journal.pone.0097684. eCollection 2014.
18. High resolution structure, stability, and synaptotagmin binding of a truncated neuronal SNARE complex. Ernst JA and Brunger AT, J Biol Chem. 2003 Mar 7;278(10):8630-6. Epub 2002 Dec 20.
19. Identification of a minimal core of the synaptic SNARE complex sufficient for reversible assembly and disassembly. Fasshauer D, etal., Biochemistry. 1998 Jul 21;37(29):10354-62.
20. rbSec1A and B colocalize with syntaxin 1 and SNAP-25 throughout the axon, but are not in a stable complex with syntaxin. Garcia EP, etal., J Cell Biol 1995 Apr;129(1):105-20.
21. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
22. Phosphorylation of SNAP-25 on serine-187 is induced by secretagogues in insulin-secreting cells, but is not correlated with insulin secretion. Gonelle-Gispert C, etal., Biochem J 2002 Nov 15;368(Pt 1):223-32.
23. Molecular analysis of SNAP-25 function in exocytosis. Graham ME, etal., Ann N Y Acad Sci 2002 Oct;971:210-21.
24. Increased RNA levels of the 25 kDa synaptosomal associated protein in brain samples of adult patients with Down Syndrome. Greber-Platzer S, etal., Neurosci Lett. 2003 Jan 16;336(2):77-80.
25. Differential distribution of release-related proteins in the hippocampal CA3 area as revealed by freeze-fracture replica labeling. Hagiwara A, etal., J Comp Neurol. 2005 Aug 22;489(2):195-216. doi: 10.1002/cne.20633.
26. NSF ATPase and alpha-/beta-SNAPs disassemble the AMPA receptor-PICK1 complex. Hanley JG, etal., Neuron 2002 Mar 28;34(1):53-67.
27. Modulation of Kv2.1 channel gating and TEA sensitivity by distinct domains of SNAP-25. He Y, etal., Biochem J. 2006 Jun 1;396(2):363-9.
28. SNAP-25 in hippocampal CA3 region is required for long-term memory formation. Hou QL, etal., Biochem Biophys Res Commun. 2006 Sep 8;347(4):955-62. Epub 2006 Jul 25.
29. Possible roles for Munc18-1 domain 3a and Syntaxin1 N-peptide and C-terminal anchor in SNARE complex formation. Hu SH, etal., Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1040-5. doi: 10.1073/pnas.0914906108. Epub 2010 Dec 30.
30. Sept8 controls the binding of vesicle-associated membrane protein 2 to synaptophysin. Ito H, etal., J Neurochem. 2009 Feb;108(4):867-80. doi: 10.1111/j.1471-4159.2008.05849.x.
31. The 25-kDa synaptosome-associated protein (SNAP-25) binds and inhibits delayed rectifier potassium channels in secretory cells. Ji J, etal., J Biol Chem 2002 Jun 7;277(23):20195-204. Epub 2002 Mar 29.
32. Nerve growth factor-induced phosphorylation of SNAP-25 in PC12 cells: a possible involvement in the regulation of SNAP-25 localization. Kataoka M, etal., J Neurochem. 2000 May;74(5):2058-66.
33. The neural cell recognition molecule neurofascin interacts with syntenin-1 but not with syntenin-2, both of which reveal self-associating activity. Koroll M, etal., J Biol Chem 2001 Apr 6;276(14):10646-54.
34. Hrs interacts with SNAP-25 and regulates Ca(2+)-dependent exocytosis. Kwong J, etal., J Cell Sci 2000 Jun;113 ( Pt 12):2273-84.
35. SNAREs are concentrated in cholesterol-dependent clusters that define docking and fusion sites for exocytosis. Lang T, etal., EMBO J 2001 May 1;20(9):2202-13.
36. SNAREs in native plasma membranes are active and readily form core complexes with endogenous and exogenous SNAREs. Lang T, etal., J Cell Biol 2002 Aug 19;158(4):751-60.
37. Identification of a novel SNAP25 interacting protein (SIP30). Lee HK, etal., J Neurochem 2002 Jun;81(6):1338-47.
38. Identification of a Novel Sequence Motif Recognized by the Ankyrin Repeat Domain of zDHHC17/13 S-Acyltransferases. Lemonidis K, etal., J Biol Chem. 2015 Sep 4;290(36):21939-50. doi: 10.1074/jbc.M115.657668. Epub 2015 Jul 21.
39. Voltage-dependent K(+) channels in pancreatic beta cells: role, regulation and potential as therapeutic targets. MacDonald PE and Wheeler MB, Diabetologia. 2003 Aug;46(8):1046-62. Epub 2003 Jun 27.
40. A plethora of presynaptic proteins associated with ATP-storing organelles in cultured astrocytes. Maienschein V, etal., Glia. 1999 May;26(3):233-44.
41. The Habc domain and the SNARE core complex are connected by a highly flexible linker. Margittai M, etal., Biochemistry. 2003 Apr 15;42(14):4009-14.
42. Evidence that an isoform of calpain-10 is a regulator of exocytosis in pancreatic beta-cells. Marshall C, etal., Mol Endocrinol. 2005 Jan;19(1):213-24. Epub 2004 Oct 7.
43. Dynamics of subcellular organelles, growth hormone, Rab3B, SNAP-25, and syntaxin in rat pituitary cells caused by growth hormone releasing hormone and somatostatin. Matsuno A, etal., Microsc Res Tech. 2003 Oct 15;62(3):232-9.
44. Complexins: cytosolic proteins that regulate SNAP receptor function. McMahon HT, etal., Cell 1995 Oct 6;83(1):111-9.
45. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
46. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
47. EHSH1/intersectin, a protein that contains EH and SH3 domains and binds to dynamin and SNAP-25. A protein connection between exocytosis and endocytosis? Okamoto M, etal., J Biol Chem 1999 Jun 25;274(26):18446-54.
48. Synaptotagmin-1 binds to PIP(2)-containing membrane but not to SNAREs at physiological ionic strength. Park Y, etal., Nat Struct Mol Biol. 2015 Oct;22(10):815-23. doi: 10.1038/nsmb.3097. Epub 2015 Sep 21.
49. Spatial, temporal and subcellular localization of islet-brain 1 (IB1), a homologue of JIP-1, in mouse brain. Pellet JB, etal., Eur J Neurosci. 2000 Feb;12(2):621-32.
50. Structural basis for the inhibitory role of tomosyn in exocytosis. Pobbati AV, etal., J Biol Chem. 2004 Nov 5;279(45):47192-200. Epub 2004 Aug 16.
51. Differential roles of developmentally distinct SNAP-25 isoforms in the neurotransmitter release process. Puffer EB, etal., Biochemistry 2001 Aug 7;40(31):9374-8.
52. Pituitary synaptic protein SNAP-25 sensitive to GnRH is necessary for LH release. Quintanar JL, etal., Endocr Regul. 2004 Mar;38(1):1-6.
53. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
54. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
55. Spring-loaded unraveling of a single SNARE complex by NSF in one round of ATP turnover. Ryu JK, etal., Science. 2015 Mar 27;347(6229):1485-9. doi: 10.1126/science.aaa5267.
56. An extremely low frequency magnetic field attenuates insulin secretion from the insulinoma cell line, RIN-m. Sakurai T, etal., Bioelectromagnetics. 2004 Apr;25(3):160-6.
57. Lipid raft association of SNARE proteins regulates exocytosis in PC12 cells. Salaun C, etal., J Biol Chem. 2005 May 20;280(20):19449-53. Epub 2005 Mar 15.
58. Sr2+ binding to the Ca2+ binding site of the synaptotagmin 1 C2B domain triggers fast exocytosis without stimulating SNARE interactions. Shin OH, etal., Neuron. 2003 Jan 9;37(1):99-108.
59. Developmental expression of SNAP-25 protein in the rat striatum and cerebral cortex. Sidor-Kaczmarek J, etal., Folia Morphol (Warsz). 2004 Aug;63(3):285-8.
60. Helical extension of the neuronal SNARE complex into the membrane. Stein A, etal., Nature. 2009 Jul 23;460(7254):525-8. doi: 10.1038/nature08156. Epub 2009 Jul 1.
61. Modulation of receptor cycling by neuron-enriched endosomal protein of 21 kD. Steiner P, etal., J Cell Biol. 2002 Jun 24;157(7):1197-209. Epub 2002 Jun 17.
62. Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution. Sutton RB, etal., Nature. 1998 Sep 24;395(6700):347-53.
63. Direct interaction of SNARE complex binding protein synaphin/complexin with calcium sensor synaptotagmin 1. Tokumaru H, etal., Brain Cell Biol. 2008 Dec;36(5-6):173-89. doi: 10.1007/s11068-008-9032-9. Epub 2009 Jan 9.
64. The C2B domain of rabphilin directly interacts with SNAP-25 and regulates the docking step of dense core vesicle exocytosis in PC12 cells. Tsuboi T and Fukuda M, J Biol Chem. 2005 Nov 25;280(47):39253-9. Epub 2005 Oct 3.
65. Cis- and trans-membrane interactions of synaptotagmin-1. Vennekate W, etal., Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):11037-42. doi: 10.1073/pnas.1116326109. Epub 2012 Jun 18.
66. SNAP-25 modulation of calcium dynamics underlies differences in GABAergic and glutamatergic responsiveness to depolarization. Verderio C, etal., Neuron. 2004 Feb 19;41(4):599-610.
67. Rat and Drosophila synaptotagmin 4 have opposite effects during SNARE-catalyzed membrane fusion. Wang Z and Chapman ER, J Biol Chem. 2010 Oct 1;285(40):30759-66. doi: 10.1074/jbc.M110.137745. Epub 2010 Aug 5.
68. Myosin-Va regulates exocytosis through the submicromolar Ca2+-dependent binding of syntaxin-1A. Watanabe M, etal., Mol Biol Cell. 2005 Oct;16(10):4519-30. Epub 2005 Jul 19.
69. Accessory proteins stabilize the acceptor complex for synaptobrevin, the 1:1 syntaxin/SNAP-25 complex. Weninger K, etal., Structure. 2008 Feb;16(2):308-20. doi: 10.1016/j.str.2007.12.010.
70. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
71. Type VI adenylyl cyclase regulates neurite extension by binding to Snapin and Snap25. Wu CS, etal., Mol Cell Biol. 2011 Dec;31(24):4874-86. doi: 10.1128/MCB.05593-11. Epub 2011 Oct 10.
72. The Kv2.1 channels mediate neuronal apoptosis induced by excitotoxicity. Yao H, etal., J Neurochem. 2009 Feb;108(4):909-19. doi: 10.1111/j.1471-4159.2008.05834.x. Epub 2008 Dec 10.
73. LRRK2 phosphorylates Snapin and inhibits interaction of Snapin with SNAP-25. Yun HJ, etal., Exp Mol Med. 2013 Aug 16;45:e36. doi: 10.1038/emm.2013.68.
74. A comparison of synaptic protein localization in hippocampal mossy fiber terminals and neurosecretory endings of the neurohypophysis using the cryo-immunogold technique. Zhang L, etal., J Neurocytol. 2000 Jan;29(1):19-30.
75. Mechanistic insights into the recycling machine of the SNARE complex. Zhao M, etal., Nature. 2015 Feb 5;518(7537):61-7. doi: 10.1038/nature14148. Epub 2015 Jan 12.
Additional References at PubMed
PMID:1281490   PMID:7768895   PMID:7961655   PMID:8738135   PMID:9039916   PMID:9168999   PMID:9395480   PMID:10037470   PMID:10336434   PMID:10510169   PMID:11524423   PMID:11533035  
PMID:11753414   PMID:11883949   PMID:12130530   PMID:12145198   PMID:12145319   PMID:12165670   PMID:12398231   PMID:12459461   PMID:12477932   PMID:12730201   PMID:14622145   PMID:14709554  
PMID:15277518   PMID:15355326   PMID:15459722   PMID:15470145   PMID:15489334   PMID:15528447   PMID:15542596   PMID:15647897   PMID:15752769   PMID:15975093   PMID:16385482   PMID:16539689  
PMID:16720719   PMID:16861228   PMID:16888141   PMID:16978778   PMID:17002520   PMID:17293448   PMID:17634366   PMID:17728451   PMID:17886343   PMID:17909947   PMID:18077557   PMID:18381601  
PMID:18385322   PMID:18503508   PMID:18703708   PMID:18721885   PMID:18827011   PMID:18986604   PMID:19482079   PMID:19509185   PMID:19546860   PMID:19661770   PMID:19679075   PMID:19735702  
PMID:19843696   PMID:20002519   PMID:20142423   PMID:20186959   PMID:20519516   PMID:20522554   PMID:20945070   PMID:21040848   PMID:21076040   PMID:21266332   PMID:21401123   PMID:21429935  
PMID:21526988   PMID:21543213   PMID:21558797   PMID:21576241   PMID:21633701   PMID:21646859   PMID:21730064   PMID:21850520   PMID:21926557   PMID:22094010   PMID:22311984   PMID:22411134  
PMID:22871113   PMID:23064108   PMID:23135794   PMID:23395379   PMID:23403573   PMID:23643538   PMID:23699527   PMID:23732542   PMID:23821748   PMID:24327345   PMID:24519330   PMID:24534378  
PMID:24680688   PMID:26888187   PMID:26923581   PMID:26971072   PMID:27693314   PMID:27791016   PMID:28240595   PMID:28412278   PMID:28483813   PMID:28515322   PMID:28634303   PMID:28884870  
PMID:28954226   PMID:29476059   PMID:30377802   PMID:30607888   PMID:31705888   PMID:31705923   PMID:32317281   PMID:32357304   PMID:32367505   PMID:33468652   PMID:34779769   PMID:34857632  
PMID:36173100   PMID:37057886   PMID:37393984   PMID:38227062  


Genomics

Comparative Map Data
Snap25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83144,494,579 - 144,576,449 (+)NCBIGRCr8
mRatBN7.23124,041,898 - 124,123,761 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3124,041,898 - 124,123,760 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3127,931,004 - 128,009,819 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03136,507,987 - 136,586,804 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03134,186,617 - 134,271,659 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03129,697,408 - 129,788,417 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3129,599,353 - 129,788,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03136,182,051 - 136,269,422 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43124,806,637 - 124,894,653 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13124,712,177 - 124,800,221 (+)NCBI
Celera3122,761,455 - 122,842,679 (+)NCBICelera
Cytogenetic Map3q36NCBI
SNAP25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382010,218,830 - 10,307,418 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2010,172,395 - 10,308,258 (+)EnsemblGRCh38hg38GRCh38
GRCh372010,199,478 - 10,288,066 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362010,147,477 - 10,236,065 (+)NCBINCBI36Build 36hg18NCBI36
Build 342010,147,476 - 10,236,065NCBI
Celera2010,269,471 - 10,358,052 (+)NCBICelera
Cytogenetic Map20p12.2NCBI
HuRef2010,151,237 - 10,239,826 (+)NCBIHuRef
CHM1_12010,200,162 - 10,288,707 (+)NCBICHM1_1
T2T-CHM13v2.02010,261,695 - 10,350,292 (+)NCBIT2T-CHM13v2.0
Snap25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392136,555,359 - 136,624,348 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2136,555,373 - 136,624,348 (+)EnsemblGRCm39 Ensembl
GRCm382136,713,439 - 136,782,428 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2136,713,453 - 136,782,428 (+)EnsemblGRCm38mm10GRCm38
MGSCv372136,539,186 - 136,608,164 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362136,404,944 - 136,473,857 (+)NCBIMGSCv36mm8
Celera2137,909,643 - 137,978,489 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map267.56NCBI
Snap25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541520,133,201 - 20,219,023 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541520,133,361 - 20,218,840 (+)NCBIChiLan1.0ChiLan1.0
SNAP25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,089,280 - 11,178,585 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12011,086,107 - 11,175,412 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02010,164,236 - 10,252,856 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12010,164,346 - 10,252,843 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2010,218,358 - 10,252,841 (+)Ensemblpanpan1.1panPan2
SNAP25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12412,003,005 - 12,081,385 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2412,004,117 - 12,081,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2411,821,959 - 11,900,304 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02412,414,152 - 12,492,563 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2412,409,789 - 12,492,544 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12412,021,341 - 12,099,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02412,120,883 - 12,199,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02412,463,988 - 12,542,509 (-)NCBIUU_Cfam_GSD_1.0
Snap25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640160,767,380 - 160,848,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364859,195,110 - 9,279,920 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364859,198,744 - 9,279,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1719,141,464 - 19,227,576 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11719,096,115 - 19,227,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21721,669,084 - 21,703,714 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1227,857,093 - 27,944,487 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl227,858,319 - 27,944,496 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607116,634,204 - 16,722,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snap25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474111,274,490 - 11,302,813 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474111,218,259 - 11,303,406 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snap25
321 total Variants
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir128-1rno-miR-128-3pMirtarbaseexternal_infoImmunocytochemistry//Luciferase reporter assay//MiFunctional MTI18381601
Mir146arno-miR-146a-5pMirtarbaseexternal_infoWestern blotNon-Functional MTI18381601

Predicted Target Of
Summary Value
Count of predictions:402
Count of miRNA genes:116
Interacting mature miRNAs:155
Transcripts:ENSRNOT00000007998, ENSRNOT00000008734
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
D3M2Mit28  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,122,549 - 124,122,669 (+)MAPPERmRatBN7.2
Rnor_6.03129,787,206 - 129,787,325NCBIRnor6.0
Rnor_5.03136,268,211 - 136,268,330UniSTSRnor5.0
RGSC_v3.43124,893,442 - 124,893,561UniSTSRGSC3.4
Celera3122,841,468 - 122,841,587UniSTS
Cytogenetic Map3q36UniSTS
D3M2Nds33   No map positions available.
D3Wox20  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,122,556 - 124,122,668 (+)MAPPERmRatBN7.2
Rnor_6.03129,787,213 - 129,787,324NCBIRnor6.0
Rnor_5.03136,268,218 - 136,268,329UniSTSRnor5.0
RGSC_v3.43124,893,448 - 124,893,561RGDRGSC3.4
RGSC_v3.43124,893,449 - 124,893,560UniSTSRGSC3.4
RGSC_v3.13124,799,021 - 124,799,134RGD
Celera3122,841,475 - 122,841,586UniSTS
RH 3.4 Map31087.1UniSTS
RH 3.4 Map31087.1RGD
RH 2.0 Map3727.2RGD
Cytogenetic Map3q36UniSTS
D3Kyo3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,122,556 - 124,122,668 (+)MAPPERmRatBN7.2
Rnor_6.03129,787,213 - 129,787,324NCBIRnor6.0
Rnor_5.03136,268,218 - 136,268,329UniSTSRnor5.0
RGSC_v3.43124,893,448 - 124,893,561RGDRGSC3.4
RGSC_v3.43124,893,449 - 124,893,560UniSTSRGSC3.4
RGSC_v3.13124,799,021 - 124,799,134RGD
Celera3122,841,475 - 122,841,586UniSTS
Cytogenetic Map3q36UniSTS
D2Mit28.3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,122,672 - 124,122,929 (+)MAPPERmRatBN7.2
Rnor_6.03129,787,329 - 129,787,585NCBIRnor6.0
Rnor_5.03136,268,334 - 136,268,590UniSTSRnor5.0
RGSC_v3.43124,893,565 - 124,893,821UniSTSRGSC3.4
Celera3122,841,591 - 122,841,847UniSTS
Cytogenetic Map3q36UniSTS
BE107867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,042,873 - 124,043,046 (+)MAPPERmRatBN7.2
Rnor_6.03129,698,384 - 129,698,556NCBIRnor6.0
Rnor_5.03136,183,027 - 136,183,199UniSTSRnor5.0
RGSC_v3.43124,807,568 - 124,807,740UniSTSRGSC3.4
Celera3122,762,431 - 122,762,603UniSTS
RH 3.4 Map31084.9UniSTS
Cytogenetic Map3q36UniSTS
MARC_11717-11718:1029180244:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23124,122,902 - 124,123,239 (+)MAPPERmRatBN7.2
Rnor_6.03129,787,559 - 129,787,895NCBIRnor6.0
Rnor_5.03136,268,564 - 136,268,900UniSTSRnor5.0
RGSC_v3.43124,893,795 - 124,894,131UniSTSRGSC3.4
Celera3122,841,821 - 122,842,157UniSTS
Cytogenetic Map3q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 13
Medium 1 55 1
Low 3 14 23 8 16 8 8 9 6 12 35 9 8
Below cutoff 22 14 14 2 14 8 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF245227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ255912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DY315301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM033263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U56261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U56262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000007998   ⟹   ENSRNOP00000007998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3124,041,898 - 124,123,760 (+)Ensembl
Rnor_6.0 Ensembl3129,753,742 - 129,787,143 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000008734   ⟹   ENSRNOP00000008734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3124,090,016 - 124,123,760 (+)Ensembl
Rnor_6.0 Ensembl3129,599,353 - 129,788,400 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080581   ⟹   ENSRNOP00000072612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3124,041,898 - 124,123,760 (+)Ensembl
Rnor_6.0 Ensembl3129,753,742 - 129,787,143 (+)Ensembl
RefSeq Acc Id: NM_001270575   ⟹   NP_001257504
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,494,595 - 144,576,449 (+)NCBI
mRatBN7.23124,041,898 - 124,123,761 (+)NCBI
Rnor_6.03129,697,408 - 129,788,417 (+)NCBI
Rnor_5.03136,182,051 - 136,269,422 (+)NCBI
Celera3122,761,455 - 122,842,679 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270576   ⟹   NP_001257505
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,494,866 - 144,576,449 (+)NCBI
mRatBN7.23124,042,169 - 124,123,761 (+)NCBI
Rnor_6.03129,697,679 - 129,788,417 (+)NCBI
Rnor_5.03136,182,051 - 136,269,422 (+)NCBI
Celera3122,761,726 - 122,842,679 (+)NCBI
Sequence:
RefSeq Acc Id: NM_030991   ⟹   NP_112253
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,494,595 - 144,576,449 (+)NCBI
mRatBN7.23124,041,898 - 124,123,761 (+)NCBI
Rnor_6.03129,697,408 - 129,788,417 (+)NCBI
Rnor_5.03136,182,051 - 136,269,422 (+)NCBI
RGSC_v3.43124,806,637 - 124,894,653 (+)RGD
Celera3122,761,455 - 122,842,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104314   ⟹   XP_038960242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,494,619 - 144,576,449 (+)NCBI
mRatBN7.23124,042,204 - 124,123,761 (+)NCBI
RefSeq Acc Id: XM_063283127   ⟹   XP_063139197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,494,579 - 144,567,985 (+)NCBI
RefSeq Acc Id: XM_063283128   ⟹   XP_063139198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83144,542,734 - 144,576,449 (+)NCBI
RefSeq Acc Id: NP_112253   ⟸   NM_030991
- Peptide Label: isoform b
- UniProtKB: P60881 (UniProtKB/Swiss-Prot),   A6HQK2 (UniProtKB/TrEMBL),   A6HQK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257504   ⟸   NM_001270575
- Peptide Label: isoform a
- UniProtKB: F8WG75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257505   ⟸   NM_001270576
- Peptide Label: isoform a
- UniProtKB: F8WG75 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008734   ⟸   ENSRNOT00000008734
Ensembl Acc Id: ENSRNOP00000072612   ⟸   ENSRNOT00000080581
Ensembl Acc Id: ENSRNOP00000007998   ⟸   ENSRNOT00000007998
RefSeq Acc Id: XP_038960242   ⟸   XM_039104314
- Peptide Label: isoform X1
- UniProtKB: P60881 (UniProtKB/Swiss-Prot),   A6HQK2 (UniProtKB/TrEMBL),   A6HQK1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139197   ⟸   XM_063283127
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139198   ⟸   XM_063283128
- Peptide Label: isoform X3
Protein Domains
t-SNARE coiled-coil homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60881-F1-model_v2 AlphaFold P60881 1-206 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3728 AgrOrtholog
BIND 130538
  130539
  134142
  134143
  134144
  134145
  134455
  134458
  134467
  134468
  134472
BioCyc Gene G2FUF-47717 BioCyc
Ensembl Genes ENSRNOG00000006037 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055023176 UniProtKB/Swiss-Prot
  ENSRNOG00060002425 UniProtKB/Swiss-Prot
  ENSRNOG00065028823 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007998 UniProtKB/TrEMBL
  ENSRNOT00000007998.8 UniProtKB/Swiss-Prot
  ENSRNOT00000008734.8 UniProtKB/TrEMBL
  ENSRNOT00000080581 UniProtKB/TrEMBL
  ENSRNOT00000080581.2 UniProtKB/Swiss-Prot
  ENSRNOT00055039873 UniProtKB/Swiss-Prot
  ENSRNOT00060003877 UniProtKB/Swiss-Prot
  ENSRNOT00065049794 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314318 IMAGE-MGC_LOAD
InterPro SNAP-25 UniProtKB/Swiss-Prot
  SNAP-25 UniProtKB/TrEMBL
  SNAP-25_dom UniProtKB/TrEMBL
  SNAP25 UniProtKB/Swiss-Prot
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25012 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105414 IMAGE-MGC_LOAD
NCBI Gene 25012 ENTREZGENE
PANTHER PTHR19305:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOSOMAL ASSOCIATED PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNAP-25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snap25 PhenoGen
PROSITE T_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006037 RatGTEx
  ENSRNOG00055023176 RatGTEx
  ENSRNOG00060002425 RatGTEx
  ENSRNOG00065028823 RatGTEx
SMART t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K3F2_RAT UniProtKB/TrEMBL
  A6HQK1 ENTREZGENE, UniProtKB/TrEMBL
  A6HQK2 ENTREZGENE, UniProtKB/TrEMBL
  A6HQK3_RAT UniProtKB/TrEMBL
  D4A5W9_RAT UniProtKB/TrEMBL
  F8WG75 ENTREZGENE, UniProtKB/TrEMBL
  P60881 ENTREZGENE
  Q2XTA5_RAT UniProtKB/TrEMBL
  SNP25_RAT UniProtKB/Swiss-Prot
UniProt Secondary P13795 UniProtKB/Swiss-Prot
  P36974 UniProtKB/Swiss-Prot
  P70557 UniProtKB/Swiss-Prot
  P70558 UniProtKB/Swiss-Prot
  Q8IXK3 UniProtKB/Swiss-Prot
  Q96FM2 UniProtKB/Swiss-Prot
  Q9BR45 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Snap25  synaptosome associated protein 25  Snap25  synaptosomal-associated protein 25  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Snap25  synaptosomal-associated protein 25    synaptosomal-associated protein  Name updated 1299863 APPROVED
2002-06-10 Snap25  synaptosomal-associated protein      Name updated 70585 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function interacts with other proteins including the C2 domain of Rim, participates with sytaxin 1 in locating cholesterol-dependent clusters in the plasmalemma, at which secretory vesicles preferentially dock and fuse 68723
gene_function interacts with other proteins including the C2 domain of Rim, participates with sytaxin 1 in locating cholesterol-dependent clusters in the plasmalemma, at which secretory vesicles preferentially dock and fuse 68912
gene_physical_interaction interacts with K(DR) channel subtype, K(V)1.1 1299041
gene_physical_interaction interacts with C(2) domains of Rab3-interacting molecule (RIM) and this interaction is modulated by calcium 68912
gene_process inhibits delayed rectifier K+ channel K(V)1.1 in insulinoma cells which likely regulates secretion 1299041
gene_process may participate in neurotransmitter release 1299042
gene_process may play a role in apical targeting of secretory vesicles in choroidal epithelium 1299043
gene_product member of the soluble NSF attachment protein (SNAP) receptor (SNARE) superfamily that mediates membrane fusion 730202
gene_protein 25 kDa 68723
gene_protein 25 kDa 68912
gene_transcript isoform SNAP-25b is present only in differentiated cells and isoform SNAP-25a is present in both differentiated and undifferentiated cells 1299042