Rph3a (rabphilin 3A) - Rat Genome Database

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Gene: Rph3a (rabphilin 3A) Mus musculus
Analyze
Symbol: Rph3a
Name: rabphilin 3A
RGD ID: 733780
MGI Page MGI
Description: Predicted to enable several functions, including anion binding activity; calcium-dependent phospholipid binding activity; and metal ion binding activity. Involved in synaptic vesicle priming. Acts upstream of or within spontaneous neurotransmitter secretion. Predicted to be located in cytosol; dendritic spine; and secretory vesicle. Predicted to be extrinsic component of membrane. Predicted to be part of protein-containing complex. Predicted to be active in several cellular components, including cholinergic synapse; neuromuscular junction; and postsynaptic membrane. Predicted to be extrinsic component of synaptic vesicle membrane. Predicted to colocalize with Golgi apparatus. Is expressed in hindbrain; medulla oblongata; and midbrain. Orthologous to human RPH3A (rabphilin 3A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900002P20Rik; AU022689; AW108370; Doc2 family; exophilin-1; rabphilin-3A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,078,562 - 121,184,249 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,078,562 - 121,148,155 (-)EnsemblGRCm39 Ensembl
GRCm385120,940,499 - 121,010,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5120,940,499 - 121,010,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,390,508 - 121,459,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,201,116 - 121,270,135 (-)NCBIMGSCv36mm8
Celera5118,026,782 - 118,095,964 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Structural and functional genomics and evolutionary relationships in the cluster of genes encoding murine 2',5'-oligoadenylate synthetases. Mashimo T, etal., Genomics 2003 Nov;82(5):537-52.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Positional cloning of the murine flavivirus resistance gene. Perelygin AA, etal., Proc Natl Acad Sci U S A 2002 Jul 9;99(14):9322-7. Epub 2002 Jun 21.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7822236   PMID:8889548   PMID:10025402   PMID:10349636   PMID:10407024   PMID:10707984   PMID:10922068   PMID:11042159   PMID:11056535   PMID:11076861   PMID:11359932   PMID:11773082  
PMID:12477932   PMID:12578829   PMID:12590134   PMID:12937130   PMID:14722103   PMID:15099020   PMID:15489334   PMID:15967669   PMID:16043482   PMID:16141072   PMID:16141073   PMID:16364898  
PMID:16512683   PMID:16602821   PMID:16763567   PMID:17124501   PMID:17223267   PMID:17803915   PMID:18829970   PMID:18987029   PMID:21521611   PMID:21873635   PMID:22794259   PMID:22993210  
PMID:26679993   PMID:27160897   PMID:27626380   PMID:28636945   PMID:28671696   PMID:29445148   PMID:30930167   PMID:31235931   PMID:31869353   PMID:31924649   PMID:32325033   PMID:32581705  
PMID:33601422   PMID:33753311   PMID:35398339   PMID:36293380   PMID:36417873   PMID:37142655   PMID:38355793  


Genomics

Comparative Map Data
Rph3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,078,562 - 121,184,249 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,078,562 - 121,148,155 (-)EnsemblGRCm39 Ensembl
GRCm385120,940,499 - 121,010,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5120,940,499 - 121,010,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,390,508 - 121,459,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,201,116 - 121,270,135 (-)NCBIMGSCv36mm8
Celera5118,026,782 - 118,095,964 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.17NCBI
RPH3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812112,575,236 - 112,898,881 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12112,570,380 - 112,898,881 (+)EnsemblGRCh38hg38GRCh38
GRCh3712113,013,040 - 113,336,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612111,714,125 - 111,819,631 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412111,692,461 - 111,797,964NCBI
Celera12112,856,609 - 112,963,778 (+)NCBICelera
Cytogenetic Map12q24.13NCBI
HuRef12110,241,984 - 110,349,225 (+)NCBIHuRef
CHM1_112113,197,984 - 113,305,112 (+)NCBICHM1_1
T2T-CHM13v2.012112,552,138 - 112,875,587 (+)NCBIT2T-CHM13v2.0
Rph3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81241,203,004 - 41,279,536 (+)NCBIGRCr8
mRatBN7.21235,542,389 - 35,618,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1235,542,728 - 35,617,592 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,721,473 - 36,796,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01237,332,667 - 37,407,266 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01236,385,126 - 36,459,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01241,073,296 - 41,149,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,073,824 - 41,148,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,938,832 - 43,014,142 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,678,613 - 36,753,316 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11236,542,000 - 36,616,704 (+)NCBI
Celera1237,205,019 - 37,281,023 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rph3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554829,225,845 - 9,312,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554829,190,137 - 9,312,596 (+)NCBIChiLan1.0ChiLan1.0
RPH3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210120,667,296 - 120,988,275 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112120,663,693 - 120,984,671 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012110,393,495 - 110,504,099 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112113,766,871 - 113,888,805 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12113,815,437 - 113,886,701 (+)Ensemblpanpan1.1panPan2
RPH3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12610,147,910 - 10,379,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2610,280,850 - 10,378,061 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2610,232,289 - 10,497,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02610,490,689 - 10,619,145 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2610,405,323 - 10,619,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12610,327,807 - 10,592,901 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02610,527,647 - 10,656,100 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02610,439,243 - 10,704,531 (+)NCBIUU_Cfam_GSD_1.0
Rph3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118148,328,663 - 148,413,066 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366682,857,732 - 2,911,517 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366682,827,574 - 2,911,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPH3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1438,867,099 - 38,969,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11438,867,095 - 39,162,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21441,316,538 - 41,482,994 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPH3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111107,818,594 - 108,155,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11108,077,043 - 108,155,539 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037136,930,533 - 137,267,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rph3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474719,441,226 - 19,495,798 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474719,439,365 - 19,657,865 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:939
Count of miRNA genes:473
Interacting mature miRNAs:557
Transcripts:ENSMUST00000079204
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse

Markers in Region
AU022689  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385120,940,529 - 120,940,769UniSTSGRCm38
MGSCv375121,390,538 - 121,390,778UniSTSGRCm37
Celera5118,026,812 - 118,027,052UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51469.48UniSTS
AW108370  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385120,940,586 - 120,940,732UniSTSGRCm38
MGSCv375121,390,595 - 121,390,741UniSTSGRCm37
Celera5118,026,869 - 118,027,015UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51469.78UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001302344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001428999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB112924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC015535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU067470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB526789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D29965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000079204   ⟹   ENSMUSP00000078198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,078,562 - 121,147,601 (-)Ensembl
GRCm38.p6 Ensembl5120,940,499 - 121,009,538 (-)Ensembl
Ensembl Acc Id: ENSMUST00000200792   ⟹   ENSMUSP00000144437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,111,430 - 121,148,155 (-)Ensembl
GRCm38.p6 Ensembl5120,973,367 - 121,010,092 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202326   ⟹   ENSMUSP00000144291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,079,904 - 121,146,605 (-)Ensembl
GRCm38.p6 Ensembl5120,941,841 - 121,008,542 (-)Ensembl
Ensembl Acc Id: ENSMUST00000202406   ⟹   ENSMUSP00000143917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5121,078,562 - 121,148,143 (-)Ensembl
GRCm38.p6 Ensembl5120,940,499 - 121,010,080 (-)Ensembl
RefSeq Acc Id: NM_001302344   ⟹   NP_001289273
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,148,155 (-)NCBI
GRCm385120,940,499 - 121,010,092 (-)NCBI
Celera5118,026,782 - 118,096,538 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302345   ⟹   NP_001289274
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,146,547 (-)NCBI
GRCm385120,940,499 - 121,008,484 (-)NCBI
Celera5118,026,782 - 118,096,538 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011286   ⟹   NP_035416
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,147,601 (-)NCBI
GRCm385120,940,499 - 121,009,538 (-)NCBI
MGSCv375121,390,508 - 121,459,527 (-)RGD
Celera5118,026,782 - 118,096,538 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248185   ⟹   XP_011246487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,147,786 (-)NCBI
GRCm385120,940,499 - 121,009,729 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248186   ⟹   XP_011246488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,148,180 (-)NCBI
GRCm385120,940,499 - 121,010,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248187   ⟹   XP_011246489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,146,639 (-)NCBI
GRCm385120,940,499 - 121,008,537 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248188   ⟹   XP_011246490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,147,789 (-)NCBI
GRCm385120,940,499 - 121,009,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164927   ⟹   XP_036020820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,148,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164928   ⟹   XP_036020821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,149,986 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164929   ⟹   XP_036020822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,184,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164930   ⟹   XP_036020823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,146,603 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164931   ⟹   XP_036020824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395121,078,562 - 121,147,787 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035416   ⟸   NM_011286
- UniProtKB: P47708 (UniProtKB/Swiss-Prot),   Q768S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289273   ⟸   NM_001302344
- UniProtKB: P47708 (UniProtKB/Swiss-Prot),   Q768S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001289274   ⟸   NM_001302345
- UniProtKB: P47708 (UniProtKB/Swiss-Prot),   Q768S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246488   ⟸   XM_011248186
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246490   ⟸   XM_011248188
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011246487   ⟸   XM_011248185
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246489   ⟸   XM_011248187
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000144291   ⟸   ENSMUST00000202326
Ensembl Acc Id: ENSMUSP00000143917   ⟸   ENSMUST00000202406
Ensembl Acc Id: ENSMUSP00000078198   ⟸   ENSMUST00000079204
Ensembl Acc Id: ENSMUSP00000144437   ⟸   ENSMUST00000200792
RefSeq Acc Id: XP_036020822   ⟸   XM_036164929
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020821   ⟸   XM_036164928
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020820   ⟸   XM_036164927
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020824   ⟸   XM_036164931
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036020823   ⟸   XM_036164930
- Peptide Label: isoform X1
- UniProtKB: Q768S5 (UniProtKB/TrEMBL)
Protein Domains
C2   FYVE-type   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P47708-F1-model_v2 AlphaFold P47708 1-681 view protein structure

Promoters
RGD ID:6887902
Promoter ID:EPDNEW_M7402
Type:initiation region
Name:Rph3a_1
Description:Mus musculus rabphilin 3A , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385121,009,538 - 121,009,598EPDNEW
RGD ID:6847947
Promoter ID:MM_ACW:39272
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:RPH3A.ASEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365121,458,621 - 121,459,121 (-)MPROMDB
RGD ID:6838259
Promoter ID:MM_KWN:43857
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_011286,   UC008ZIM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365121,459,371 - 121,459,871 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102788 AgrOrtholog
Ensembl Genes ENSMUSG00000029608 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000079204 ENTREZGENE
  ENSMUST00000079204.9 UniProtKB/Swiss-Prot
  ENSMUST00000200792.2 UniProtKB/TrEMBL
  ENSMUST00000202326 ENTREZGENE
  ENSMUST00000202326.4 UniProtKB/Swiss-Prot
  ENSMUST00000202406 ENTREZGENE
  ENSMUST00000202406.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_BD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rabphilin/DOC2/Noc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rabphilin_Doc2_C2A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPH3A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19894 UniProtKB/Swiss-Prot
MGD MGI:102788 ENTREZGENE
NCBI Gene 19894 ENTREZGENE
PANTHER PTHR45729 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45729:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rph3a PhenoGen
PRINTS C2DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YV12_MOUSE UniProtKB/TrEMBL
  P47708 ENTREZGENE
  Q768S5 ENTREZGENE, UniProtKB/TrEMBL
  RP3A_MOUSE UniProtKB/Swiss-Prot