Rph3a (rabphilin 3A) - Rat Genome Database

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Gene: Rph3a (rabphilin 3A) Ictidomys tridecemlineatus
Analyze
Symbol: Rph3a
Name: rabphilin 3A
RGD ID: 12689126
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN brain development (ortholog); dendritic spine organization (ortholog); regulation of NMDA receptor activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cholinergic synapse (ortholog); cytosol (ortholog); dendritic spine (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: rabphilin 3A homolog; rabphilin 3A, transcript variant X1; rabphilin 3A, transcript variant X2; rabphilin-3A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118148,328,663 - 148,413,066 (+)NCBI
SpeTri2.0NW_0049366682,827,574 - 2,911,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

References

Genomics

Comparative Map Data
Rph3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118148,328,663 - 148,413,066 (+)NCBI
SpeTri2.0NW_0049366682,827,574 - 2,911,955 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPH3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12112,570,380 - 112,898,881 (+)EnsemblGRCh38hg38GRCh38
GRCh3812112,575,236 - 112,898,881 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712113,013,040 - 113,336,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612111,714,125 - 111,819,631 (+)NCBINCBI36hg18NCBI36
Build 3412111,692,461 - 111,797,964NCBI
Celera12112,856,609 - 112,963,778 (+)NCBI
Cytogenetic Map12q24.13NCBI
HuRef12110,241,984 - 110,349,225 (+)NCBIHuRef
CHM1_112113,197,984 - 113,305,112 (+)NCBICHM1_1
Rph3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,078,562 - 121,184,249 (-)NCBIGRCm39mm39
GRCm39 Ensembl5121,078,562 - 121,148,155 (-)Ensembl
GRCm385120,940,499 - 121,010,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5120,940,499 - 121,010,092 (-)EnsemblGRCm38mm10GRCm38
MGSCv375121,390,508 - 121,459,527 (-)NCBIGRCm37mm9NCBIm37
MGSCv365121,201,116 - 121,270,135 (-)NCBImm8
Celera5118,026,782 - 118,095,964 (-)NCBICelera
Cytogenetic Map5FNCBI
Rph3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21235,542,389 - 35,618,901 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1235,542,728 - 35,617,592 (+)Ensembl
Rnor_6.01241,073,296 - 41,149,799 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1241,073,824 - 41,148,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,938,832 - 43,014,142 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,678,613 - 36,753,316 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11236,542,000 - 36,616,704 (+)NCBI
Celera1237,205,019 - 37,281,023 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rph3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554829,225,845 - 9,312,695 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554829,190,137 - 9,312,596 (+)NCBIChiLan1.0ChiLan1.0
RPH3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112113,766,871 - 113,888,805 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12113,815,437 - 113,886,701 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012110,393,495 - 110,504,099 (+)NCBIMhudiblu_PPA_v0panPan3
RPH3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12610,147,910 - 10,379,742 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2610,280,850 - 10,378,061 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2610,232,289 - 10,497,349 (+)NCBI
ROS_Cfam_1.02610,490,689 - 10,619,145 (+)NCBI
UMICH_Zoey_3.12610,327,807 - 10,592,901 (+)NCBI
UNSW_CanFamBas_1.02610,527,647 - 10,656,100 (+)NCBI
UU_Cfam_GSD_1.02610,439,243 - 10,704,531 (+)NCBI
RPH3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1438,867,099 - 39,161,537 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11438,867,095 - 39,162,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21441,316,538 - 41,482,994 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPH3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111107,818,594 - 108,155,546 (+)NCBI
ChlSab1.1 Ensembl11108,077,043 - 108,155,539 (+)Ensembl
Vero_WHO_p1.0NW_023666037136,930,533 - 137,267,850 (-)NCBI
Rph3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474719,439,365 - 19,657,865 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021734256   ⟹   XP_021589931
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118148,328,668 - 148,413,066 (+)NCBI
SpeTri2.0NW_0049366682,827,575 - 2,911,955 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040289429   ⟹   XP_040145363
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118148,328,665 - 148,413,066 (+)NCBI
RefSeq Acc Id: XM_040289430   ⟹   XP_040145364
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118148,328,663 - 148,413,066 (+)NCBI
RefSeq Acc Id: XM_040289431   ⟹   XP_040145365
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118148,328,665 - 148,413,066 (+)NCBI
RefSeq Acc Id: XM_040289432   ⟹   XP_040145366
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118148,328,665 - 148,413,066 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_021589931   ⟸   XM_021734256
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040145364   ⟸   XM_040289430
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040145363   ⟸   XM_040289429
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040145366   ⟸   XM_040289432
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040145365   ⟸   XM_040289431
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016262 ENTREZGENE
Ensembl Protein ENSSTOP00000014562 ENTREZGENE
NCBI Gene Rph3a ENTREZGENE