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Gene: Trim9 (tripartite motif-containing 9) Rattus norvegicus
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Symbol: Trim9
Name: tripartite motif-containing 9
Description: Exhibits SNARE binding activity. Involved in negative regulation of SNARE complex assembly; negative regulation of calcium ion-dependent exocytosis; and synaptic vesicle exocytosis. Localizes to the cytoskeleton; presynaptic cytosol; and synaptic vesicle. Orthologous to human TRIM9 (tripartite motif containing 9); INTERACTS WITH ammonium chloride; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: E3 ubiquitin-protein ligase TRIM9; RING-type E3 ubiquitin transferase TRIM9; SNAP-25-interacting RING finger protein; Spring; tripartite motif protein 9; tripartite motif-containing protein 9
Orthologs:
Homo sapiens (human) : TRIM9 (tripartite motif containing 9)  HGNC  Alliance
Mus musculus (house mouse) : Trim9 (tripartite motif-containing 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Trim9 (tripartite motif containing 9)
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM9 (tripartite motif containing 9)
Canis lupus familiaris (dog) : TRIM9 (tripartite motif containing 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Trim9 (tripartite motif containing 9)
Sus scrofa (pig) : TRIM9 (tripartite motif containing 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0692,660,026 - 92,760,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl692,660,505 - 92,760,018 (-)Ensembl
Rnor_5.06102,107,774 - 102,207,427 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4692,358,509 - 92,457,863 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1692,361,964 - 92,461,319 (-)NCBI
Celera687,245,397 - 87,344,755 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Trim9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621540
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.