Snap91 (synaptosome associated protein 91) - Rat Genome Database

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Gene: Snap91 (synaptosome associated protein 91) Rattus norvegicus
Analyze
Symbol: Snap91
Name: synaptosome associated protein 91
RGD ID: 69276
Description: Exhibits several functions, including SH2 domain binding activity; anion binding activity; and clathrin binding activity. Involved in several processes, including negative regulation of phospholipase activity; positive regulation of cellular component organization; and positive regulation of synaptic vesicle clustering. Localizes to several cellular components, including Schaffer collateral - CA1 synapse; cytoplasmic vesicle; and synaptic membrane. Biomarker of middle cerebral artery infarction. Orthologous to human SNAP91 (synaptosome associated protein 91); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; INTERACTS WITH 1-naphthyl isothiocyanate; bisphenol A; cocaine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 91 kDa synaptosomal-associated protein; Ap180; assembly protein 180 (AP180); clathrin coat assembly protein AP180; clathrin coat-associated protein AP180; synaptosomal-associated protein 91; synaptosomal-associated protein 91 kDa; synaptosomal-associated protein, 91 kDa; synaptosomal-associated protein, 91kDa homolog; synaptosomal-associated protein, 91kDa homolog (mouse)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2887,738,056 - 87,852,690 (-)NCBI
Rnor_6.0 Ensembl894,447,550 - 94,564,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0894,447,558 - 94,564,772 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0893,958,152 - 94,074,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4892,033,425 - 92,147,091 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1892,052,879 - 92,166,546 (-)NCBI
Celera887,338,970 - 87,446,775 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Abid SN, etal., Biol Reprod. 2014 Feb 13;90(2):32. doi: 10.1095/biolreprod.113.113555. Print 2014 Feb.
2. Brett TJ, etal., Structure. 2002 Jun;10(6):797-809.
3. Bushlin I, etal., J Neurosci. 2008 Oct 8;28(41):10257-71. doi: 10.1523/JNEUROSCI.2471-08.2008.
4. Cao Y, etal., J Alzheimers Dis. 2010;22(1):329-42. doi: 10.3233/JAD-2010-100162.
5. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Han SJ, etal., Biochem Biophys Res Commun 2002 Jan 11;290(1):35-41.
7. Kalthoff C, etal., J Biol Chem. 2002 Mar 8;277(10):8209-16. Epub 2001 Dec 26.
8. Koo SJ, etal., Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13540-5. doi: 10.1073/pnas.1107067108. Epub 2011 Aug 1.
9. Lee C, etal., J Biol Chem. 1997 Jun 20;272(25):15986-92.
10. Lee JH, etal., J Neurosci 1999 Mar 15;19(6):1912-21.
11. Morris SA, etal., EMBO J 1993 Feb;12(2):667-75.
12. NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. Norris FA, etal., J Biol Chem. 1995 Jan 6;270(1):214-7.
14. Petralia RS and Yao PJ, J Comp Neurol. 2007 Sep 20;504(3):314-27.
15. Petralia RS, etal., Neuromolecular Med. 2013 Mar;15(1):49-60. doi: 10.1007/s12017-012-8194-x. Epub 2012 Aug 1.
16. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. RGD automated import pipeline for gene-chemical interactions
18. Ritter B, etal., EMBO J. 2007 Sep 19;26(18):4066-77. Epub 2007 Aug 30.
19. Rudinskiy N, etal., J Biol Chem. 2009 May 1;284(18):12447-58. doi: 10.1074/jbc.M804740200. Epub 2009 Feb 24.
20. Saheki Y and De Camilli P, Cold Spring Harb Perspect Biol. 2012 Sep 1;4(9):a005645. doi: 10.1101/cshperspect.a005645.
21. Schwartz CM, etal., J Comp Neurol. 2010 Sep 15;518(18):3803-18. doi: 10.1002/cne.22425.
22. Traub LM, etal., Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):8907-12.
23. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
24. Yao PJ, etal., J Comp Neurol 2002 May 27;447(2):152-62.
25. Yao PJ, etal., J Comp Neurol. 2005 Jan 3;481(1):58-69.
Additional References at PubMed
PMID:9045662   PMID:10428863   PMID:11102472   PMID:16025302   PMID:16254249   PMID:16903783   PMID:20937255   PMID:21307259   PMID:21500857   PMID:22871113   PMID:26412491   PMID:29476059  


Genomics

Comparative Map Data
Snap91
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2887,738,056 - 87,852,690 (-)NCBI
Rnor_6.0 Ensembl894,447,550 - 94,564,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0894,447,558 - 94,564,772 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0893,958,152 - 94,074,269 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4892,033,425 - 92,147,091 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1892,052,879 - 92,166,546 (-)NCBI
Celera887,338,970 - 87,446,775 (-)NCBICelera
Cytogenetic Map8q31NCBI
SNAP91
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl683,552,880 - 83,709,691 (-)EnsemblGRCh38hg38GRCh38
GRCh38683,552,885 - 83,709,403 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37684,262,604 - 84,419,127 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36684,319,332 - 84,475,495 (-)NCBINCBI36hg18NCBI36
Build 34684,319,331 - 84,475,495NCBI
Celera684,695,893 - 84,852,438 (-)NCBI
Cytogenetic Map6q14.2NCBI
HuRef681,492,256 - 81,648,799 (-)NCBIHuRef
CHM1_1684,360,208 - 84,516,740 (-)NCBICHM1_1
Snap91
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39986,647,976 - 86,762,766 (-)NCBIGRCm39mm39
GRCm39 Ensembl986,647,976 - 86,762,707 (-)Ensembl
GRCm38986,765,923 - 86,880,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl986,765,923 - 86,880,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv37986,659,239 - 86,775,207 (-)NCBIGRCm37mm9NCBIm37
MGSCv36986,562,350 - 86,678,320 (-)NCBImm8
Celera983,843,031 - 83,967,649 (-)NCBICelera
Cytogenetic Map9E3.1NCBI
Snap91
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541111,175,525 - 11,300,950 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541111,175,587 - 11,301,145 (-)NCBIChiLan1.0ChiLan1.0
SNAP91
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1684,717,271 - 84,875,561 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl684,720,850 - 84,874,407 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0681,441,792 - 81,600,505 (-)NCBIMhudiblu_PPA_v0panPan3
SNAP91
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11243,919,925 - 44,058,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1243,919,925 - 44,058,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1243,734,660 - 43,872,902 (-)NCBI
ROS_Cfam_1.01244,689,016 - 44,828,781 (-)NCBI
UMICH_Zoey_3.11244,027,843 - 44,166,268 (-)NCBI
UNSW_CanFamBas_1.01243,961,559 - 44,100,121 (-)NCBI
UU_Cfam_GSD_1.01244,138,511 - 44,276,836 (-)NCBI
Snap91
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494679,125,757 - 79,248,750 (-)NCBI
SpeTri2.0NW_0049365107,222,200 - 7,345,138 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP91
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl182,540,985 - 82,697,342 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1182,540,998 - 82,698,652 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2192,790,018 - 92,949,958 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP91
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1138,221,601 - 8,374,205 (-)NCBI
Vero_WHO_p1.0NW_023666040184,439,639 - 184,590,396 (-)NCBI
Snap91
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479910,913,834 - 11,060,185 (+)NCBI

Position Markers
RH138297  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2887,770,977 - 87,771,142 (+)MAPPER
Rnor_6.0894,483,139 - 94,483,303NCBIRnor6.0
Rnor_5.0893,992,946 - 93,993,110UniSTSRnor5.0
RGSC_v3.4892,065,627 - 92,065,791UniSTSRGSC3.4
Celera887,371,070 - 87,371,234UniSTS
RH 3.4 Map81020.8UniSTS
Cytogenetic Map8q31UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)89531047119211942Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)821813070100873963Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)829867983106526740Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)829867983106526740Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)829867983106526740Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)830918112107206309Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)832888352101374135Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)833558660109028082Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)833558660109028082Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)833558660109028082Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)833558764113580387Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)839230130106506973Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)844219197100873963Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)844458129118087517Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84658843796998640Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)847200750106394378Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)847200750106394378Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)847200750106394378Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)847200750106394378Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)847200750106394378Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)847200750106394378Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)850529480128036471Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)850529563106506973Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)855435004115812386Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)855659105100659105Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)858230766106394378Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)858425510106526740Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)859234112108068306Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)861394378106394378Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)861394378106394378Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)865717449128033050Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)872849686117849686Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight as a percentage of body weight (CMO:0000654)874917593121080545Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)876103982127182642Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)878805083123805083Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)878805083123805083Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)878805083123805083Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)878805083123805083Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)880697934125697934Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)883894304128894304Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)889058229132243842Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:18
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000032792
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 4 68 1
Low 3 17 19 7 19 7 1 1 6 35 39 9 1
Below cutoff 19 19 19 7 8 1 2 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000032792   ⟹   ENSRNOP00000030821
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl894,453,483 - 94,563,760 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084437   ⟹   ENSRNOP00000071379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl894,447,550 - 94,564,525 (-)Ensembl
RefSeq Acc Id: NM_031728   ⟹   NP_113916
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,058 - 87,852,532 (-)NCBI
Rnor_6.0894,448,370 - 94,564,497 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
RGSC_v3.4892,033,425 - 92,147,091 (-)RGD
Celera887,338,970 - 87,446,775 (-)RGD
Sequence:
RefSeq Acc Id: XM_006243491   ⟹   XP_006243553
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,527 (-)NCBI
Rnor_6.0894,447,558 - 94,564,649 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243492   ⟹   XP_006243554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,690 (-)NCBI
Rnor_6.0894,447,558 - 94,564,772 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243494   ⟹   XP_006243556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
Rnor_6.0894,447,558 - 94,564,649 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243495   ⟹   XP_006243557
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
Rnor_6.0894,447,558 - 94,564,650 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243497   ⟹   XP_006243559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,517 (-)NCBI
Rnor_6.0894,447,558 - 94,564,649 (-)NCBI
Rnor_5.0893,958,152 - 94,074,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766455   ⟹   XP_008764677
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,447,558 - 94,564,397 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595901   ⟹   XP_017451390
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,447,558 - 94,564,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595902   ⟹   XP_017451391
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,447,558 - 94,564,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595903   ⟹   XP_017451392
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,447,558 - 94,564,650 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595904   ⟹   XP_017451393
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0894,447,558 - 94,564,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595905   ⟹   XP_017451394
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,515 (-)NCBI
Rnor_6.0894,447,558 - 94,564,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082106   ⟹   XP_038938034
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
RefSeq Acc Id: XM_039082107   ⟹   XP_038938035
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,518 (-)NCBI
RefSeq Acc Id: XM_039082108   ⟹   XP_038938036
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
RefSeq Acc Id: XM_039082109   ⟹   XP_038938037
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
RefSeq Acc Id: XM_039082110   ⟹   XP_038938038
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,518 (-)NCBI
RefSeq Acc Id: XM_039082111   ⟹   XP_038938039
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
RefSeq Acc Id: XM_039082112   ⟹   XP_038938040
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
RefSeq Acc Id: XM_039082113   ⟹   XP_038938041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
RefSeq Acc Id: XM_039082114   ⟹   XP_038938042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
RefSeq Acc Id: XM_039082115   ⟹   XP_038938043
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,518 (-)NCBI
RefSeq Acc Id: XM_039082116   ⟹   XP_038938044
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,517 (-)NCBI
RefSeq Acc Id: XM_039082117   ⟹   XP_038938045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,532 (-)NCBI
RefSeq Acc Id: XM_039082118   ⟹   XP_038938046
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,455 (-)NCBI
RefSeq Acc Id: XM_039082119   ⟹   XP_038938047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,852,517 (-)NCBI
RefSeq Acc Id: XM_039082120   ⟹   XP_038938048
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
RefSeq Acc Id: XM_039082121   ⟹   XP_038938049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2887,738,056 - 87,851,630 (-)NCBI
Protein Sequences
Protein RefSeqs NP_113916 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243553 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243554 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243556 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243557 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243559 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451394 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938034 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938036 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938037 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938038 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938039 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938040 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938042 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938043 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938044 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938046 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938048 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938049 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA48748 (Get FASTA)   NCBI Sequence Viewer  
  CAA48749 (Get FASTA)   NCBI Sequence Viewer  
  EDL77614 (Get FASTA)   NCBI Sequence Viewer  
  EDL77615 (Get FASTA)   NCBI Sequence Viewer  
  EDL77616 (Get FASTA)   NCBI Sequence Viewer  
  EDL77617 (Get FASTA)   NCBI Sequence Viewer  
  EDL77618 (Get FASTA)   NCBI Sequence Viewer  
  EDL77619 (Get FASTA)   NCBI Sequence Viewer  
  EDL77620 (Get FASTA)   NCBI Sequence Viewer  
  EDL77621 (Get FASTA)   NCBI Sequence Viewer  
  Q05140 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_113916   ⟸   NM_031728
- Sequence:
RefSeq Acc Id: XP_006243554   ⟸   XM_006243492
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243559   ⟸   XM_006243497
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006243557   ⟸   XM_006243495
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006243553   ⟸   XM_006243491
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243556   ⟸   XM_006243494
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008764677   ⟸   XM_008766455
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451392   ⟸   XM_017595903
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017451394   ⟸   XM_017595905
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017451393   ⟸   XM_017595904
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017451391   ⟸   XM_017595902
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451390   ⟸   XM_017595901
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000071379   ⟸   ENSRNOT00000084437
RefSeq Acc Id: ENSRNOP00000030821   ⟸   ENSRNOT00000032792
RefSeq Acc Id: XP_038938039   ⟸   XM_039082111
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038938041   ⟸   XM_039082113
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038938045   ⟸   XM_039082117
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038938040   ⟸   XM_039082112
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038938035   ⟸   XM_039082107
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938043   ⟸   XM_039082115
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038938038   ⟸   XM_039082110
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938047   ⟸   XM_039082119
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038938044   ⟸   XM_039082116
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038938049   ⟸   XM_039082121
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038938048   ⟸   XM_039082120
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038938037   ⟸   XM_039082109
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938036   ⟸   XM_039082108
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038938034   ⟸   XM_039082106
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938042   ⟸   XM_039082114
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038938046   ⟸   XM_039082118
- Peptide Label: isoform X17
Protein Domains
ENTH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69276 AgrOrtholog
Ensembl Genes ENSRNOG00000023861 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000030821 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071379 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032792 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000084437 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ANTH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP180 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_AP_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65178 UniProtKB/Swiss-Prot
NCBI Gene 65178 ENTREZGENE
PANTHER PTHR22951:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ANTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snap91 PhenoGen
PROSITE ENTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ENTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0B6_RAT UniProtKB/TrEMBL
  AP180_RAT UniProtKB/Swiss-Prot
  F1LRK0_RAT UniProtKB/TrEMBL
  Q05140 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Snap91  synaptosome associated protein 91  Snap91  synaptosomal-associated protein 91  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-18 Snap91  synaptosomal-associated protein 91  Snap91  synaptosomal-associated protein, 91kDa homolog (mouse)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Snap91  synaptosomal-associated protein, 91kDa homolog (mouse)    synaptosomal-associated protein, 91 kDa  Name updated 1299863 APPROVED
2002-06-10 Snap91  synaptosomal-associated protein, 91 kDa      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference