Cadps (calcium dependent secretion activator) - Rat Genome Database

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Gene: Cadps (calcium dependent secretion activator) Rattus norvegicus
Analyze
Symbol: Cadps
Name: calcium dependent secretion activator
RGD ID: 708573
Description: Enables calcium ion binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in positive regulation of calcium ion-dependent exocytosis. Located in dense core granule and glutamatergic synapse. Is extrinsic component of neuronal dense core vesicle membrane. Is active in presynapse. Orthologous to human CADPS (calcium dependent secretion activator); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ca++-dependent secretion activator; Ca2+ dependent secretion activator; Ca2+-dependent activator protein; Ca2+-dependent secretion activator; Ca<2+-dependent activator protein for secretion; calcium-dependent activator protein for secretion 1; calcium-dependent secretion activator 1; calcium-dependent secretion activator 1-like; Caps; CAPS-1; Caps1; Caps2; LOC103690082; rCAPS
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21512,289,803 - 12,742,786 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
Rnor_6.01515,275,489 - 15,690,575 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1515,275,541 - 15,667,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,777,584 - 16,823,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01519,278,581 - 19,669,176 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41513,859,286 - 14,319,814 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11513,859,285 - 14,319,814 (+)NCBI
Celera1512,289,818 - 12,740,628 (+)NCBICelera
Cytogenetic Map15p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9162085   PMID:9697859   PMID:10792045   PMID:11927595   PMID:15312653   PMID:15820695   PMID:15857609   PMID:15866726   PMID:17540763   PMID:18022372   PMID:19008227   PMID:19460754  
PMID:19896969   PMID:20826818   PMID:20921225   PMID:21040848   PMID:21307259   PMID:21803295   PMID:23801330   PMID:25374362   PMID:25719439   PMID:26700319   PMID:27528604   PMID:29476059  
PMID:30053369  


Genomics

Candidate Gene Status
Cadps is a candidate Gene for QTL Kidm51
Comparative Map Data
Cadps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21512,289,803 - 12,742,786 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
Rnor_6.01515,275,489 - 15,690,575 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1515,275,541 - 15,667,778 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01516,777,584 - 16,823,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01519,278,581 - 19,669,176 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41513,859,286 - 14,319,814 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11513,859,285 - 14,319,814 (+)NCBI
Celera1512,289,818 - 12,740,628 (+)NCBICelera
Cytogenetic Map15p15NCBI
CADPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl362,398,346 - 62,875,416 (-)EnsemblGRCh38hg38GRCh38
GRCh38362,398,348 - 62,875,865 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37362,384,023 - 62,861,091 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36362,359,061 - 62,836,094 (-)NCBINCBI36hg18NCBI36
Build 34362,359,061 - 62,836,094NCBI
Celera362,401,123 - 62,879,063 (-)NCBI
Cytogenetic Map3p14.2NCBI
HuRef362,482,129 - 62,959,100 (-)NCBIHuRef
CHM1_1362,335,136 - 62,812,174 (-)NCBICHM1_1
Cadps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39149,646,424 - 10,097,203 (+)NCBIGRCm39mm39
GRCm39 Ensembl149,646,684 - 10,097,200 (+)Ensembl
GRCm381412,372,560 - 12,823,339 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1412,372,563 - 12,823,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv371413,205,077 - 13,655,593 (-)NCBIGRCm37mm9NCBIm37
MGSCv361411,165,830 - 11,616,320 (-)NCBImm8
Celera148,001,668 - 8,456,520 (-)NCBICelera
Cytogenetic Map14A1NCBI
Cadps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555172,965,471 - 3,420,183 (+)NCBIChiLan1.0ChiLan1.0
CADPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1363,708,293 - 64,181,768 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0362,321,496 - 62,797,298 (-)NCBIMhudiblu_PPA_v0panPan3
CADPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12028,221,150 - 28,680,844 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2028,221,843 - 28,680,131 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2028,144,566 - 28,609,081 (+)NCBI
ROS_Cfam_1.02028,444,589 - 28,915,736 (+)NCBI
UMICH_Zoey_3.12027,941,382 - 28,401,452 (+)NCBI
UNSW_CanFamBas_1.02028,298,223 - 28,759,372 (+)NCBI
UU_Cfam_GSD_1.02028,394,230 - 28,859,360 (+)NCBI
Cadps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118165,154,804 - 165,634,154 (+)NCBI
SpeTri2.0NW_0049366373,543,615 - 4,023,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CADPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11343,979,694 - 44,482,985 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21348,085,695 - 48,367,520 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CADPS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12223,471,616 - 23,948,694 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041142,910,744 - 143,393,718 (+)NCBIVero_WHO_p1.0
Cadps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248882,985,966 - 3,443,542 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D15Rat54  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,496,141 - 12,496,364 (+)MAPPERmRatBN7.2
Rnor_6.01515,492,360 - 15,492,582NCBIRnor6.0
Rnor_5.01519,494,318 - 19,494,540UniSTSRnor5.0
RGSC_v3.41514,072,030 - 14,072,252UniSTSRGSC3.4
RGSC_v3.41514,072,029 - 14,072,252RGDRGSC3.4
RGSC_v3.11514,072,030 - 14,072,252RGD
Celera1512,495,261 - 12,495,483UniSTS
RH 3.4 Map15103.3RGD
RH 3.4 Map15103.3UniSTS
RH 2.0 Map1543.8RGD
SHRSP x BN Map159.5998RGD
FHH x ACI Map158.0199RGD
FHH x ACI Map158.0599UniSTS
Cytogenetic Map15p16UniSTS
D15Rat159  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01519,494,317 - 19,494,540NCBIRnor5.0
RGSC_v3.41514,072,030 - 14,072,252UniSTSRGSC3.4
RGSC_v3.11514,072,029 - 14,072,252RGD
Celera1512,495,261 - 12,495,483UniSTS
RH 3.4 Map15103.3UniSTS
FHH x ACI Map158.0599RGD
D15Rat137  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,345,430 - 12,345,585 (+)MAPPERmRatBN7.2
Rnor_6.01515,330,772 - 15,330,924NCBIRnor6.0
Rnor_5.01519,333,571 - 19,333,723UniSTSRnor5.0
RGSC_v3.41513,915,113 - 13,915,266RGDRGSC3.4
RGSC_v3.41513,915,114 - 13,915,266UniSTSRGSC3.4
RGSC_v3.11513,915,113 - 13,915,266RGD
Celera1512,344,951 - 12,345,103UniSTS
SHRSP x BN Map159.5698RGD
SHRSP x BN Map159.5698UniSTS
Cytogenetic Map15p16UniSTS
BF388496  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,624,913 - 12,625,084 (+)MAPPERmRatBN7.2
Rnor_6.01515,620,473 - 15,620,643NCBIRnor6.0
Rnor_5.01519,622,093 - 19,622,263UniSTSRnor5.0
RGSC_v3.41514,200,391 - 14,200,561UniSTSRGSC3.4
Celera1512,622,841 - 12,623,011UniSTS
RH 3.4 Map1595.4UniSTS
Cytogenetic Map15p16UniSTS
RH134048  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,372,228 - 12,372,410 (+)MAPPERmRatBN7.2
Rnor_6.01515,357,873 - 15,358,054NCBIRnor6.0
Rnor_5.01519,360,381 - 19,360,562UniSTSRnor5.0
RGSC_v3.41513,945,942 - 13,946,123UniSTSRGSC3.4
Celera1512,371,725 - 12,371,906UniSTS
RH 3.4 Map1596.6UniSTS
Cytogenetic Map15p16UniSTS
BF388503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,720,057 - 12,720,192 (+)MAPPERmRatBN7.2
Rnor_6.01512,773,740 - 12,773,874NCBIRnor6.0
Rnor_5.01516,800,959 - 16,801,093UniSTSRnor5.0
RGSC_v3.41514,297,094 - 14,297,228UniSTSRGSC3.4
Celera1512,717,901 - 12,718,035UniSTS
RH 3.4 Map1595.8UniSTS
Cytogenetic Map15p16UniSTS
AU048310  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,527,434 - 12,527,551 (+)MAPPERmRatBN7.2
Rnor_6.01515,523,610 - 15,523,726NCBIRnor6.0
Rnor_5.01519,525,568 - 19,525,684UniSTSRnor5.0
RGSC_v3.41514,103,287 - 14,103,403UniSTSRGSC3.4
Celera1512,526,110 - 12,526,226UniSTS
Cytogenetic Map15p16UniSTS
RH135013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,741,868 - 12,742,083 (+)MAPPERmRatBN7.2
Rnor_6.01512,795,550 - 12,795,764NCBIRnor6.0
Rnor_5.01516,822,769 - 16,822,983UniSTSRnor5.0
RGSC_v3.41514,318,904 - 14,319,118UniSTSRGSC3.4
Celera1512,739,718 - 12,739,932UniSTS
RH 3.4 Map1599.0UniSTS
Cytogenetic Map15p16UniSTS
RH136728  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,742,410 - 12,742,648 (+)MAPPERmRatBN7.2
Rnor_6.01512,796,092 - 12,796,329NCBIRnor6.0
Rnor_5.01516,823,311 - 16,823,548UniSTSRnor5.0
RGSC_v3.41514,319,446 - 14,319,683UniSTSRGSC3.4
Celera1512,740,260 - 12,740,497UniSTS
RH 3.4 Map15110.0UniSTS
Cytogenetic Map15p16UniSTS
RH138000  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,605,556 - 12,605,705 (+)MAPPERmRatBN7.2
Rnor_6.01515,601,116 - 15,601,264NCBIRnor6.0
Rnor_5.01519,602,736 - 19,602,884UniSTSRnor5.0
RGSC_v3.41514,181,034 - 14,181,182UniSTSRGSC3.4
Celera1512,603,472 - 12,603,620UniSTS
RH 3.4 Map1595.2UniSTS
Cytogenetic Map15p16UniSTS
AW531782  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21512,288,885 - 12,289,050 (+)MAPPERmRatBN7.2
Rnor_6.01515,274,113 - 15,274,277NCBIRnor6.0
Rnor_5.01519,277,205 - 19,277,369UniSTSRnor5.0
RGSC_v3.41513,857,907 - 13,858,071UniSTSRGSC3.4
Celera1512,288,442 - 12,288,606UniSTS
RH 3.4 Map1597.8UniSTS
Cytogenetic Map15p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15105825014481294Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:123
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000012153
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 8 70 2
Low 3 35 17 11 17 11 3 3 4 34 33 10 3
Below cutoff 24 22 2 22 5 6 1 6 1 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U16802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000012153   ⟹   ENSRNOP00000012153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
Rnor_6.0 Ensembl1515,275,541 - 15,667,778 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094744   ⟹   ENSRNOP00000076873
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094787   ⟹   ENSRNOP00000095628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098925   ⟹   ENSRNOP00000092113
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099157   ⟹   ENSRNOP00000095354
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105737   ⟹   ENSRNOP00000093742
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115067   ⟹   ENSRNOP00000086566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1512,290,262 - 12,742,779 (+)Ensembl
RefSeq Acc Id: NM_013219   ⟹   NP_037351
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,262 - 12,742,779 (+)NCBI
Rnor_6.01515,275,489 - 15,690,575 (+)NCBI
Rnor_5.01516,777,584 - 16,823,679 (+)NCBI
Rnor_5.01519,278,581 - 19,669,176 (+)NCBI
RGSC_v3.41513,859,286 - 14,319,814 (+)RGD
Celera1512,289,818 - 12,740,628 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093041   ⟹   XP_038948969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093042   ⟹   XP_038948970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093043   ⟹   XP_038948971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093044   ⟹   XP_038948972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093045   ⟹   XP_038948973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093046   ⟹   XP_038948974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093047   ⟹   XP_038948975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093048   ⟹   XP_038948976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093049   ⟹   XP_038948977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093050   ⟹   XP_038948978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093051   ⟹   XP_038948979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093052   ⟹   XP_038948980
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093053   ⟹   XP_038948981
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093054   ⟹   XP_038948982
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093055   ⟹   XP_038948983
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093056   ⟹   XP_038948984
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093058   ⟹   XP_038948986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,808 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093059   ⟹   XP_038948987
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093060   ⟹   XP_038948988
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093061   ⟹   XP_038948989
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093062   ⟹   XP_038948990
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,807 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093063   ⟹   XP_038948991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,804 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093064   ⟹   XP_038948992
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093065   ⟹   XP_038948993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,805 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093066   ⟹   XP_038948994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,805 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093067   ⟹   XP_038948995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093068   ⟹   XP_038948996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093069   ⟹   XP_038948997
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,806 - 12,741,766 (+)NCBI
RefSeq Acc Id: XM_039093070   ⟹   XP_038948998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,290,314 - 12,741,932 (+)NCBI
RefSeq Acc Id: XM_039093071   ⟹   XP_038948999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,803 - 12,742,786 (+)NCBI
RefSeq Acc Id: XM_039093072   ⟹   XP_038949000
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21512,289,805 - 12,742,786 (+)NCBI
Protein Sequences
Protein RefSeqs NP_037351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948974 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948975 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948982 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948983 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948984 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948987 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948988 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948989 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948990 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948991 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948992 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948995 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948996 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948997 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948998 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949000 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB88635 (Get FASTA)   NCBI Sequence Viewer  
  EDL94133 (Get FASTA)   NCBI Sequence Viewer  
  EDL94134 (Get FASTA)   NCBI Sequence Viewer  
  Q62717 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_037351   ⟸   NM_013219
- Sequence:
RefSeq Acc Id: ENSRNOP00000012153   ⟸   ENSRNOT00000012153
RefSeq Acc Id: XP_038948999   ⟸   XM_039093071
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038948991   ⟸   XM_039093063
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038948993   ⟸   XM_039093065
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038948994   ⟸   XM_039093066
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038949000   ⟸   XM_039093072
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038948969   ⟸   XM_039093041
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948973   ⟸   XM_039093045
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038948970   ⟸   XM_039093042
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948972   ⟸   XM_039093044
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948976   ⟸   XM_039093048
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038948974   ⟸   XM_039093046
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038948996   ⟸   XM_039093068
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038948971   ⟸   XM_039093043
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038948997   ⟸   XM_039093069
- Peptide Label: isoform X28
RefSeq Acc Id: XP_038948975   ⟸   XM_039093047
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038948977   ⟸   XM_039093049
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038948979   ⟸   XM_039093051
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038948981   ⟸   XM_039093053
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038948989   ⟸   XM_039093061
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038948984   ⟸   XM_039093056
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038948990   ⟸   XM_039093062
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038948986   ⟸   XM_039093058
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038948998   ⟸   XM_039093070
- Peptide Label: isoform X29
RefSeq Acc Id: XP_038948982   ⟸   XM_039093054
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038948980   ⟸   XM_039093052
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038948992   ⟸   XM_039093064
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038948978   ⟸   XM_039093050
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038948995   ⟸   XM_039093067
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038948987   ⟸   XM_039093059
- Peptide Label: isoform X18
RefSeq Acc Id: XP_038948983   ⟸   XM_039093055
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038948988   ⟸   XM_039093060
- Peptide Label: isoform X19
RefSeq Acc Id: ENSRNOP00000095628   ⟸   ENSRNOT00000094787
RefSeq Acc Id: ENSRNOP00000076873   ⟸   ENSRNOT00000094744
RefSeq Acc Id: ENSRNOP00000095354   ⟸   ENSRNOT00000099157
RefSeq Acc Id: ENSRNOP00000092113   ⟸   ENSRNOT00000098925
RefSeq Acc Id: ENSRNOP00000093742   ⟸   ENSRNOT00000105737
RefSeq Acc Id: ENSRNOP00000086566   ⟸   ENSRNOT00000115067
Protein Domains
C2   MHD1   PH

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708573 AgrOrtholog
Ensembl Genes ENSRNOG00000008570 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000012153 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012153 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAPS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Munc13_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:26989 UniProtKB/Swiss-Prot
NCBI Gene 26989 ENTREZGENE
PANTHER PTHR12166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1041 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cadps PhenoGen
PROSITE MHD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUF1041 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CAPS1_RAT UniProtKB/Swiss-Prot
  F1LLX6_RAT UniProtKB/TrEMBL
  Q62717 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Cadps  calcium dependent secretion activator  LOC103690082  calcium-dependent secretion activator 1-like  Data Merged 737654 PROVISIONAL
2016-06-22 Cadps  calcium dependent secretion activator  Cadps  Ca2+ dependent secretion activator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Cadps  Ca2+ dependent secretion activator  Cadps  Ca++-dependent secretion activator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690082  calcium-dependent secretion activator 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-29 Cadps  Ca++-dependent secretion activator  Cadps  Ca2+-dependent secretion activator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27     Cadps  Ca2+-dependent secretion activator  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Cadps  Ca2+-dependent secretion activator    Ca<2+-dependent activator protein for secretion  Name updated 1299863 APPROVED
2004-12-14 Cadps  Ca<2+-dependent activator protein for secretion  Caps  Ca2+-dependent activator protein  Symbol and Name updated 1299863 APPROVED