Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atp6v1d (ATPase H+ transporting V1 subunit D) Rattus norvegicus
Analyze
Symbol: Atp6v1d
Name: ATPase H+ transporting V1 subunit D
Description: Predicted to have proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in cilium assembly and protein localization to cilium. Predicted to colocalize with the centrosome and cilium. Orthologous to human ATP6V1D (ATPase H+ transporting V1 subunit D); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 1-nitropropane; 2,4-diaminotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D; ATPase, H+ transporting, lysosomal V1 subunit D; ATPase, H+ transporting, V1 subunit D; V-type proton ATPase subunit D
Orthologs:
Homo sapiens (human) : ATP6V1D (ATPase H+ transporting V1 subunit D)  HGNC  Alliance
Mus musculus (house mouse) : Atp6v1d (ATPase, H+ transporting, lysosomal V1 subunit D)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Atp6v1d (ATPase H+ transporting V1 subunit D)
Pan paniscus (bonobo/pygmy chimpanzee) : ATP6V1D (ATPase H+ transporting V1 subunit D)
Canis lupus familiaris (dog) : ATP6V1D (ATPase H+ transporting V1 subunit D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Atp6v1d (ATPase H+ transporting V1 subunit D)
Sus scrofa (pig) : ATP6V1D (ATPase H+ transporting V1 subunit D)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06102,032,271 - 102,047,754 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,032,276 - 102,047,758 (-)Ensembl
Rnor_5.06111,407,085 - 111,421,779 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46101,479,417 - 101,494,826 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16101,482,872 - 101,498,282 (-)NCBI
Celera696,044,738 - 96,060,175 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
  
More on Atp6v1d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 735119
Created: 2004-02-05
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.