Btbd8 (BTB domain containing 8) - Rat Genome Database

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Gene: Btbd8 (BTB domain containing 8) Rattus norvegicus
Analyze
Symbol: Btbd8
Name: BTB domain containing 8
RGD ID: 2321418
Description: Predicted to be involved in synaptic vesicle budding from endosome and synaptic vesicle endocytosis. Located in neuron projection terminus and synaptic vesicle. Part of AP-2 adaptor complex. Orthologous to human BTBD8 (BTB domain containing 8); INTERACTS WITH Brodifacoum; glyphosate; thapsigargin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: APache; BTB (POZ) domain containing 8; BTB (POZ) domain containing 8-like; BTB/POZ domain-containing protein 8; LOC100364240; LOC305122; LOC689994; LOC690003; similar to BTB (POZ) domain containing 8; similar to H43E16.1; uncharacterized protein KIAA1107
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,410,093 - 2,483,114 (-)NCBIGRCr8
mRatBN7.2142,265,187 - 2,338,426 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,266,454 - 2,334,393 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0143,282,422 - 3,351,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,284,089 - 3,300,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,285,858 - 3,355,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,846,003 - 2,897,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,293,640 - 2,351,955 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. APache Is an AP2-Interacting Protein Involved in Synaptic Vesicle Trafficking and Neuronal Development. Piccini A, etal., Cell Rep. 2017 Dec 19;21(12):3596-3611. doi: 10.1016/j.celrep.2017.11.073.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Btbd8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,410,093 - 2,483,114 (-)NCBIGRCr8
mRatBN7.2142,265,187 - 2,338,426 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,266,454 - 2,334,393 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0143,282,422 - 3,351,740 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,284,089 - 3,300,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,285,858 - 3,355,200 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,846,003 - 2,897,088 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera142,293,640 - 2,351,955 (-)NCBICelera
Cytogenetic Map14p22NCBI
BTBD8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,080,345 - 92,184,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,080,305 - 92,184,725 (+)EnsemblGRCh38hg38GRCh38
GRCh37192,545,902 - 92,650,280 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,318,481 - 92,385,985 (+)NCBINCBI36Build 36hg18NCBI36
Build 34192,257,913 - 92,325,414NCBI
Celera190,792,299 - 90,859,815 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,666,116 - 90,733,635 (+)NCBIHuRef
CHM1_1192,660,686 - 92,728,226 (+)NCBICHM1_1
T2T-CHM13v2.0191,925,186 - 92,029,580 (+)NCBIT2T-CHM13v2.0
Btbd8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,585,796 - 107,660,426 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,585,863 - 107,659,073 (+)EnsemblGRCm39 Ensembl
GRCm385107,437,930 - 107,512,560 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,437,997 - 107,511,207 (+)EnsemblGRCm38mm10GRCm38
MGSCv375107,867,016 - 107,920,615 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,678,299 - 107,731,898 (+)NCBIMGSCv36mm8
Celera5104,551,274 - 104,604,857 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
BTBD8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,842,874 - 134,946,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,994,463 - 134,097,870 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,739,780 - 94,843,172 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,483,702 - 93,587,229 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,569,680 - 93,587,229 (+)Ensemblpanpan1.1panPan2
BTBD8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,756,682 - 56,849,849 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,698,320 - 56,900,173 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,460,913 - 59,555,751 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0657,139,502 - 57,232,357 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl657,139,503 - 57,232,298 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,813,063 - 56,909,419 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,791,209 - 56,885,794 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,252,135 - 57,348,507 (-)NCBIUU_Cfam_GSD_1.0
Btbd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058101,970,548 - 102,048,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365376,895,569 - 6,915,849 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365376,899,271 - 6,977,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,859,279 - 124,950,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,859,271 - 124,950,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1

Variants

.
Variants in Btbd8
322 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:70
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000037931, ENSRNOT00000061556
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 45
Low 3 41 56 40 19 40 8 11 29 35 41 11 8
Below cutoff 2 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000037931   ⟹   ENSRNOP00000038747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,266,454 - 2,334,393 (-)Ensembl
Rnor_6.0 Ensembl143,284,089 - 3,300,200 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000061556   ⟹   ENSRNOP00000058273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,304,176 - 2,334,393 (-)Ensembl
RefSeq Acc Id: NM_001419526   ⟹   NP_001406455
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,410,093 - 2,479,202 (-)NCBI
mRatBN7.2142,265,187 - 2,334,294 (-)NCBI
RefSeq Acc Id: XM_006250597   ⟹   XP_006250659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,479,287 (-)NCBI
mRatBN7.2142,265,189 - 2,334,373 (-)NCBI
Rnor_6.0143,282,422 - 3,351,725 (-)NCBI
Rnor_5.0143,285,858 - 3,355,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092623   ⟹   XP_038948551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,479,287 (-)NCBI
mRatBN7.2142,265,189 - 2,334,374 (-)NCBI
RefSeq Acc Id: XM_039092624   ⟹   XP_038948552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,410,093 - 2,479,288 (-)NCBI
mRatBN7.2142,265,189 - 2,334,375 (-)NCBI
RefSeq Acc Id: XM_039092625   ⟹   XP_038948553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,483,114 (-)NCBI
mRatBN7.2142,266,444 - 2,338,426 (-)NCBI
RefSeq Acc Id: XM_039092626   ⟹   XP_038948554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,474,349 (-)NCBI
mRatBN7.2142,265,189 - 2,329,441 (-)NCBI
RefSeq Acc Id: XM_039092627   ⟹   XP_038948555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,479,288 (-)NCBI
mRatBN7.2142,267,378 - 2,334,374 (-)NCBI
RefSeq Acc Id: XM_039092629   ⟹   XP_038948557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,440,719 (-)NCBI
mRatBN7.2142,265,189 - 2,295,818 (-)NCBI
RefSeq Acc Id: XM_039092630   ⟹   XP_038948558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,426,820 (-)NCBI
mRatBN7.2142,265,189 - 2,281,916 (-)NCBI
RefSeq Acc Id: XM_063272796   ⟹   XP_063128866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,479,287 (-)NCBI
RefSeq Acc Id: XM_063272797   ⟹   XP_063128867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,426,596 (-)NCBI
RefSeq Acc Id: XM_063272798   ⟹   XP_063128868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,426,820 (-)NCBI
RefSeq Acc Id: XM_063272799   ⟹   XP_063128869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,411,350 - 2,426,820 (-)NCBI
RefSeq Acc Id: XP_006250659   ⟸   XM_006250597
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000038747   ⟸   ENSRNOT00000037931
RefSeq Acc Id: XP_038948552   ⟸   XM_039092624
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948551   ⟸   XM_039092623
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948554   ⟸   XM_039092626
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948557   ⟸   XM_039092629
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038948558   ⟸   XM_039092630
- Peptide Label: isoform X8
- UniProtKB: A6KPJ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948553   ⟸   XM_039092625
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038948555   ⟸   XM_039092627
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000058273   ⟸   ENSRNOT00000061556
RefSeq Acc Id: NP_001406455   ⟸   NM_001419526
- UniProtKB: D4A0X3 (UniProtKB/Swiss-Prot),   A0A452Q762 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063128866   ⟸   XM_063272796
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063128869   ⟸   XM_063272799
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063128868   ⟸   XM_063272798
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128867   ⟸   XM_063272797
- Peptide Label: isoform X8
Protein Domains
BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0X3-F1-model_v2 AlphaFold D4A0X3 1-1237 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699168
Promoter ID:EPDNEW_R9684
Type:single initiation site
Name:AC106605_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0143,351,579 - 3,351,639EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2321418 AgrOrtholog
BioCyc Gene G2FUF-16623 BioCyc
Ensembl Genes ENSRNOG00000023446 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037931 ENTREZGENE
  ENSRNOT00000037931.5 UniProtKB/Swiss-Prot
  ENSRNOT00000061556.2 UniProtKB/TrEMBL
InterPro BACK_BTBD8 UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTBD8_BTB_POZ_1 UniProtKB/TrEMBL
  DUF4596 UniProtKB/Swiss-Prot
  KIAA1107 UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100364240 UniProtKB/Swiss-Prot
NCBI Gene 100364240 ENTREZGENE
PANTHER AP2-INTERACTING CLATHRIN-ENDOCYTOSIS PROTEIN UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4596 UniProtKB/Swiss-Prot
PhenoGen Btbd8 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023446 RatGTEx
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A452Q762 ENTREZGENE
  A6KPJ4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZN57_RAT UniProtKB/TrEMBL
  D4A0X3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A452Q762 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Btbd8  BTB domain containing 8  Btbd8  BTB (POZ) domain containing 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 Btbd8  BTB (POZ) domain containing 8  LOC689994  similar to H43E16.1  Data merged from RGD:1586307 737654 PROVISIONAL
2013-08-07 LOC100364240  BTB (POZ) domain containing 8-like  Btbd8  BTB (POZ) domain containing 8  Data merged from RGD:1585205 737654 APPROVED
2013-08-07 Btbd8  BTB (POZ) domain containing 8  LOC100364240  BTB (POZ) domain containing 8-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100364240  BTB (POZ) domain containing 8-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-10-30 Btbd8  BTB (POZ) domain containing 8  LOC690003  similar to BTB (POZ) domain containing 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689994  similar to H43E16.1  RGD1306921_predicted  similar to mKIAA1107 protein (predicted)  Data merged from RGD:1306921 1643240 APPROVED
2006-11-19 LOC689994  similar to H43E16.1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC690003  similar to BTB (POZ) domain containing 8      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1306921_predicted  similar to mKIAA1107 protein (predicted)  LOC305122_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305122_predicted  similar to mKIAA1107 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL