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Gene: Lyst (lysosomal trafficking regulator) Rattus norvegicus
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Symbol: Lyst
Name: lysosomal trafficking regulator
Description: Involved in pigmentation. Predicted to localize to the cytosol and microtubule cytoskeleton. Used to study Chediak-Higashi syndrome. Human ortholog(s) of this gene implicated in Chediak-Higashi syndrome. Orthologous to human LYST (lysosomal trafficking regulator); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Beige; LOC360289; lysosomal-trafficking regulator
Orthologs:
Homo sapiens (human) : LYST (lysosomal trafficking regulator)  HGNC  Alliance
Mus musculus (house mouse) : Lyst (lysosomal trafficking regulator)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lyst (lysosomal trafficking regulator)
Pan paniscus (bonobo/pygmy chimpanzee) : LYST (lysosomal trafficking regulator)
Canis lupus familiaris (dog) : LYST (lysosomal trafficking regulator)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lyst (lysosomal trafficking regulator)
Sus scrofa (pig) : LYST (lysosomal trafficking regulator)
more info ...
Is Marker For: Strains:   DA.Cg-Foxn1rnu Lystbg/Slc  
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01790,323,055 - 90,522,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01791,983,426 - 92,113,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01792,156,826 - 92,183,054 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41766,569,478 - 66,735,402 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11766,580,310 - 66,746,235NCBI
Celera1785,172,435 - 85,333,653 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Phenotype Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Related Rat Strains
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Lyst
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621837
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.