Hook2 (hook microtubule-tethering protein 2)

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Gene: Hook2 (hook microtubule-tethering protein 2) Rattus norvegicus

Analyze

Symbol:

Hook2

Name:

hook microtubule-tethering protein 2

RGD ID:

1310171

Description:

Predicted to enable dynein light intermediate chain binding activity; identical protein binding activity; and microtubule binding activity. Predicted to be involved in several processes, including early endosome to late endosome transport; endosome to lysosome transport; and protein localization to perinuclear region of cytoplasm. Predicted to be located in cytosol and trans-Golgi network. Predicted to be part of FHF complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human HOOK2 (hook microtubule tethering protein 2); INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hook homolog 2; hook homolog 2 (Drosophila); LOC304669

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	23,151,869 - 23,170,139 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	23,151,870 - 23,164,181 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	29,974,439 - 29,987,015 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	30,628,797 - 30,641,376 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	32,851,475 - 32,864,052 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	26,106,713 - 26,119,353 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	26,106,838 - 26,119,352 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	37,082,361 - 37,094,976 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	24,808,204 - 24,819,397 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	24,813,376 - 24,824,426 (-)	NCBI
Celera	19	22,709,747 - 22,721,741 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 4 (ISO)

alpha-mannosidosis (ISO)

Charcot-Marie-Tooth disease dominant intermediate B (ISO)

episodic ataxia type 2 (ISO)

genetic disease (ISO)

glutaric acidemia I (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

captan (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

folpet (ISO)

gentamycin (EXP)

indometacin (ISO)

metformin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

Nivalenol (ISO)

paracetamol (EXP)

parathion (ISO)

phenobarbital (ISO)

quercetin (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sunitinib (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoplasmic microtubule organization (IBA)

cytoskeleton-dependent intracellular transport (IBA)

early endosome to late endosome transport (ISO)

endosome organization (ISO)

endosome to lysosome transport (ISO)

lysosome organization (ISO)

protein localization to perinuclear region of cytoplasm (ISO)

Cellular Component

centrosome (IBA,ISO)

cytoplasm (IBA)

cytosol (IEA,ISO)

cytosol (ISO)

FHF complex (ISO)

HOPS complex (IEA,ISO)

intracellular membrane-bounded organelle (ISO)

microtubule (IEA)

trans-Golgi network (ISO)

Molecular Function

dynein light intermediate chain binding (IBA)

identical protein binding (ISO)

microtubule binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:17140400	PMID:18799622

Genomics

Comparative Map Data

Hook2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	23,151,869 - 23,170,139 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	23,151,870 - 23,164,181 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	29,974,439 - 29,987,015 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	30,628,797 - 30,641,376 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	32,851,475 - 32,864,052 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	26,106,713 - 26,119,353 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	26,106,838 - 26,119,352 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	37,082,361 - 37,094,976 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	24,808,204 - 24,819,397 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	24,813,376 - 24,824,426 (-)	NCBI
Celera	19	22,709,747 - 22,721,741 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

HOOK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	12,763,003 - 12,792,350 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	19	12,763,003 - 12,872,740 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	12,873,817 - 12,903,164 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	12,734,817 - 12,747,434 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	12,734,816 - 12,747,337	NCBI
Celera	19	12,763,527 - 12,776,144 (-)	NCBI		Celera
Cytogenetic Map	19	p13.13	NCBI
HuRef	19	12,446,753 - 12,459,369 (-)	NCBI		HuRef
CHM1_1	19	12,874,278 - 12,886,908 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	12,887,497 - 12,916,842 (-)	NCBI		T2T-CHM13v2.0

Hook2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,715,402 - 85,729,981 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	85,717,232 - 85,729,978 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	84,988,776 - 85,003,352 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	84,990,603 - 85,003,349 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	87,514,494 - 87,527,263 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	87,880,724 - 87,893,366 (+)	NCBI		MGSCv36	mm8
Celera	8	89,285,271 - 89,297,949 (+)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

Hook2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,853,091 - 31,865,450 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	31,855,183 - 31,865,413 (-)	NCBI	ChiLan1.0	ChiLan1.0

HOOK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	13,070,289 - 13,084,690 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	13,070,289 - 13,082,612 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	12,325,578 - 12,340,754 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

HOOK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	49,367,450 - 49,383,109 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	49,367,876 - 49,382,813 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	49,241,088 - 49,256,725 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	49,885,871 - 49,901,539 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	49,890,074 - 49,901,286 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	49,096,996 - 49,112,621 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	49,523,273 - 49,538,952 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	49,765,953 - 49,781,619 (+)	NCBI		UU_Cfam_GSD_1.0

Hook2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	208,475,529 - 208,485,084 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	1,869,622 - 1,879,213 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936659	1,869,622 - 1,879,213 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HOOK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	66,227,601 - 66,244,828 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	66,227,562 - 66,239,671 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	66,476,422 - 66,493,546 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HOOK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	11,452,154 - 11,464,718 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	11,449,026 - 11,464,622 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	8,331,646 - 8,344,488 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hook2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624901	378,967 - 392,027 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624901	379,952 - 391,727 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hook2
43 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	71
Count of miRNA genes:	58
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000035987
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411590	Foco7	Food consumption QTL 7	6.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	19	1	24688055	Rat
10054132	Srcrt9	Stress Responsive Cort QTL 9	2.87	0.0017	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	27355345	Rat
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	13926401	30303727	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat

Markers in Region

RH137868

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	23,152,021 - 23,152,146 (-)	MAPPER	mRatBN7.2
Rnor_6.0	19	26,119,076 - 26,119,200	NCBI	Rnor6.0
Rnor_5.0	19	37,094,699 - 37,094,823	UniSTS	Rnor5.0
RGSC_v3.4	19	24,808,351 - 24,808,475	UniSTS	RGSC3.4
Celera	19	22,709,900 - 22,710,024	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		4	4		4			64	35	36	3
Low		43	53	37	19	37	8	11	10		5	8	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC099235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ203898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB548211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB696289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB785578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000035987 ⟹ ENSRNOP00000033999

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	23,151,870 - 23,164,181 (-)	Ensembl
Rnor_6.0 Ensembl	19	26,106,838 - 26,119,352 (+)	Ensembl

RefSeq Acc Id:

NM_001100562 ⟹ NP_001094032

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,869 - 23,164,181 (-)	NCBI
Rnor_6.0	19	26,106,838 - 26,119,353 (+)	NCBI
Rnor_5.0	19	37,082,361 - 37,094,976 (+)	NCBI
Celera	19	22,709,747 - 22,721,741 (-)	NCBI

Sequence:

show sequence

TTCGGCCGCTCGCTGGTGGCGGACCCGGAGGCTGCTGCTGCGTGCCGGGGCTCCTTGGCCCGGA
TCGAATTCGATCCGGAGCCATGAGTATGGACAAGGCCGAGCTATGCGGGTCTCTGCTCACCTGG
TTGCAGACGTTTCAAGTTTCGCCCCCCTGTGCCAGTCCCCAGGACCTGAGCAGCGGACTCGCCA
TAGCCCATGTGCTGAATCAGATAGACCCTTCCTGGTTCAACGACGCATGGCTCCAAGGCATCTC
AGAGGACCCGAGTCCCAGCTGGAGGTTGAAGGTCAGGAAGCTGGAGAGGATCCTACAGAGCTTG
GTGGAATACTCAAAGGATGTTCTGGGGCACCCTGTGTCACATCAGCATCTTCCAGATGTGAGCC
TCATCGGCGAGTTCTCAAACCCCGCAGAACTCGGCAAACTGCTTCAGTTGGTACTGGCCTGTGC
TATCAGTTGTGAGAAAAAGCAGGAGTATATCCAAAGAATTATGATGCTGGAGGAATCTGTTCAA
CATGTTGTGATGGAAGCCATCCAGGAGCTCATGACCAAAGACACACCTGATTCCCTGTCACCAG
AGAATTACGGGAACTTTGATACACAGTCCCGCAGGTACTATTTCCTGAGCGAGGAGGTGGAAGA
GGGTGGCGATCTTCAGCAACACTACCTGGATCTGGAGCGGCAGCTTGTGCTCCTTTCAGAGGAG
AAGCAGAGTCTGGCACAAGAGAATGCTGCCCTACGGGAGAGGGTGGGCCGGTCGGAAGTGGAGA
GTGCCTCAGGCCTCACCGCCAAGAAGCTGTTGCTTCTGCAGTCACAGCTAGAACAGCTCCAGGA
GGAGAATTTCAGGCTGGAGAGTAGCCGGGAAGATGAGCGGCTACGCTGCGTGGAACTGGAGCGT
GAGGTCGCTGAGCTGCAGCAACGGAACCAAGCCCTGGCCAGCTTATCCCAGGAGGCGCAAGCGC
TGAAGGATGAGATGGATGAGCTCCGACAGTCCTCCGAACGTGCAAGGCAGCTGGAGGCCACTCT
GAACAGCTGCCGTCGTCGCCTGGGTGAGCTCCAGGAGCTCCGGCGGCAGGTGCGGCAGCTGGAG
GAGCGAAATGCAGGGCACGCGGAGCGCACGCGGCAGCTGGAGGATGAGCTGCGCCGGGCCGGAT
CCCTGCGTGCCCAGCTCGAGGCTCAGCGCAGGCAGGTAAGGCAGATGCAAGAGTTGCAGGGCCA
GTGGCAGGAGGAGGCCATGAAGGCTGAGAAGTGGCTGTTCGAATGCCAAAACCTAGAGGAAAAG
TGTGACCTGTTGACAAAAGAGAAGGAGCGGCTGTTGACTGAGAGGGACTCCCTGAGGGAGACCA
ATGAGGAGCTCCGATGTGCCCAGTTGCAGCCCAGGGGATTGAATCAGGCTGGCCTCTCCCTGGA
TCCTACCCCTTCTGGCCTGGAGAACTTAGCAGCAGAGATCCTGCCTGCAGAGCTCAGAGAGACA
CTCGTGCGGCTTCAGCTGGAGAACAAGAGACTGTGCCAGCAAGAGGCTGCGGACCGGGAGCGAC
AGGAGGAACTGCAGCGCCACCTGGAGGAGGCCAACCGTGCACGCCATGGGCTGGAAGCGCAGCA
ACGGCTGAACCAGCAGCAGCTTTCTGAGCTGAGGGCCCAGGTGGAAGAGCTACAGAAGGCCTTG
CAGGAGCAGGGGGGCAAGACAGACGACCCCACCCTGCTGAAGCGGAAGCTGGAGGATCATCTGC
AGAAGCTGCATGAGGCTGATCTGGAGCTTCAGAGGAAACGGGAATACATTGAGGAGTTGGAGCC
TCCCACGGACAGCAACACTAGGCGGATCGAGGAGCTGCAGGACAGTCTGCAGAAGAAGGATGCA
GACCTGCGGGCCATGGAGGAACGATACCGCCGCTACGTGGACAAGGCACGCACGGTCATTCAGA
CCCTGGAACCCAAGCAGAGGCCACCCAGTGTGGTGTCCCCAGAATTCCATACTCTAAGGTCACA
GCTCTGGGAGCGGAACATGCGAATACGGCAGCTGGAGATGGACTATGAGAAGAGTCGGAGTCGG
CAGGAGCAGGAGGAAAAGCTGCTCATCAGTGCCTGGTACAGCATGGGCATGGCCTTGGAGCATC
GGGCTGGGGAAGAGCATGCCCCTGCCCATGCCCAGTCCTTCCTGGCACAGCAAAGACTGGCCAC
CAATGCTCGCCGAGGACCCCTGGGGCGCCAGGCATCTCTGAGCCTTCGCCCCACTGACAAGCAC
TGACAGACCTCGACTTCCTGCTGCCTGCTGAAGTCTTCCAGTTTACATTTACCCAGGCTGGGGC
TTTGACCTCGATGGAGACTGACTTCTGCCCTCTGCTTCCTTAGATGGGAGAGAAGGGGAAGGCA
GGTGGCAGGTGTAGGACTATTCCTTTTAGCAATGTGATTCTTCTTGATTCTTCTCCTGGGCCTC
ATGTACTACCTGGGAAGAGCCTGATTTTATATTTGAAAAAAAAAATAAAGACTTTAAATCTGTC
TTGAATGTACTCTAGACACAATGGTGAGGAATAAAAATTGCACTAGGGACACAGACGGTTACTT
TTAAAATAAATGTATGAGCATTTTTGCCCATCTGTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006255257 ⟹ XP_006255319

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,164,245 (-)	NCBI
Rnor_6.0	19	26,106,714 - 26,119,347 (+)	NCBI
Rnor_5.0	19	37,082,361 - 37,094,976 (+)	NCBI

Sequence:

show sequence

CAAGATGGCGAGGCGGGGAGGCAAGCGCTTGCAATTGGAAGAGATCACGTGTCTGGGGCGGAGC
CTAGGCCTAGGGGGCGGGATGGAGCAGGGCGGCGCTCTAGGCAGAGCGGGAGGTCTGGGCTTCG
GGCGCTCGCTGGTGGCGGACCCGGAGGCTGCTGCTGCGTGCCGGGGCTCCTTGGCCCGGATCGA
ATTCGATCCGGAGCCATGAGTATGGACAAGGCCGAGCTATGCGGGTCTCTGCTCACCTGGTTGC
AGACGTTTCAAGTTTCGCCCCCCTGTGCCAGTCCCCAGGACCTGAGCAGCGGACTCGCCATAGC
CCATGTGCTGAATCAGATAGACCCTTCCTGGTTCAACGACGCATGGCTCCAAGGCATCTCAGAG
GACCCGAGTCCCAGCTGGAGGTTGAAGGTCAGGAAGCTGGAGAGGATCCTACAGAGCTTGGTGG
AATACTCAAAGGATGTTCTGGGGCACCCTGTGTCACATCAGCATCTTCCAGATGTGAGCCTCAT
CGGCGAGTTCTCAAACCCCGCAGAACTCGGCAAACTGCTTCAGTTGGTACTGGCCTGTGCTATC
AGTTGTGAGAAAAAGCAGGAGTATATCCAAAGAATTATGATGCTGGAGGAATCTGTTCAACATG
TTGTGATGGAAGCCATCCAGGAGCTCATGACCAAAGACACACCTGATTCCCTGTCACCAGAGAA
TTACGGGAACTTTGATACACAGTCCCGCAGGTACTATTTCCTGAGCGAGGAGGTGGAAGAGGGT
GGCGATCTTCAGCAACACTACCTGGATCTGGAGCGGCAGCTTGTGCTCCTTTCAGAGGAGAAGC
AGAGTCTGGCACAAGAGAATGCTGCCCTACGGGAGAGGGTGGGCCGGTCGGAAGTGGAGAGTGC
CTCAGGCCTCACCGCCAAGAAGCTGTTGCTTCTGCAGTCACAGCTAGAACAGCTCCAGGAGGAG
AATTTCAGGCTGGAGAGTAGCCGGGAAGATGAGCGGCTACGCTGCGTGGAACTGGAGCGTGAGG
TCGCTGAGCTGCAGCAACGGAACCAAGCCCTGGCCAGCTTATCCCAGGAGGCGCAAGCGCTGAA
GGATGAGATGGATGAGCTCCGACAGTCCTCCGAACGTGCAAGGCAGCTGGAGGCCACTCTGAAC
AGCTGCCGTCGTCGCCTGGGTGAGCTCCAGGAGCTCCGGCGGCAGGTGCGGCAGCTGGAGGAGC
GAAATGCAGGGCACGCGGAGCGCACGCGGCAGCTGGAGGATGAGCTGCGCCGGGCCGGATCCCT
GCGTGCCCAGCTCGAGGCTCAGCGCAGGCAGATGCAAGAGTTGCAGGGCCAGTGGCAGGAGGAG
GCCATGAAGGCTGAGAAGTGGCTGTTCGAATGCCAAAACCTAGAGGAAAAGTGTGACCTGTTGA
CAAAAGAGAAGGAGCGGCTGTTGACTGAGAGGGACTCCCTGAGGGAGACCAATGAGGAGCTCCG
ATGTGCCCAGTTGCAGCCCAGGGGATTGAATCAGGCTGGCCTCTCCCTGGATCCTACCCCTTCT
GGCCTGGAGAACTTAGCAGCAGAGATCCTGCCTGCAGAGCTCAGAGAGACACTCGTGCGGCTTC
AGCTGGAGAACAAGAGACTGTGCCAGCAAGAGGCTGCGGACCGGGAGCGACAGGAGGAACTGCA
GCGCCACCTGGAGGAGGCCAACCGTGCACGCCATGGGCTGGAAGCGCAGCAACGGCTGAACCAG
CAGCAGCTTTCTGAGCTGAGGGCCCAGGTGGAAGAGCTACAGAAGGCCTTGCAGGAGCAGGGGG
GCAAGACAGACGACCCCACCCTGCTGAAGCGGAAGCTGGAGGATCATCTGCAGAAGCTGCATGA
GGCTGATCTGGAGCTTCAGAGGAAACGGGAATACATTGAGGAGTTGGAGCCTCCCACGGACAGC
AACACAGCTAGGCGGATCGAGGAGCTGCAGGACAGTCTGCAGAAGAAGGATGCAGACCTGCGGG
CCATGGAGGAACGATACCGCCGCTACGTGGACAAGGCACGCACGGTCATTCAGACCCTGGAACC
CAAGCAGAGGCCACCCAGTGTGGTGTCCCCAGAATTCCATACTCTAAGGTCACAGCTCTGGGAG
CGGAACATGCGAATACGGCAGCTGGAGATGGACTATGAGAAGAGTCGGAGTCGGCAGGAGCAGG
AGGAAAAGCTGCTCATCAGTGCCTGGTACAGCATGGGCATGGCCTTGGAGCATCGGGCTGGGGA
AGAGCATGCCCCTGCCCATGCCCAGTCCTTCCTGGCACAGCAAAGACTGGCCACCAATGCTCGC
CGAGGACCCCTGGGGCGCCAGGCATCTCTGAGCCTTCGCCCCACTGACAAGCACTGACAGACCT
CGACTTCCTGCTGCCTGCTGAAGTCTTCCAGTTTACATTTACCCAGGCTGGGGCTTTGACCTCG
ATGGAGACTGACTTCTGCCCTCTGCTTCCTTAGATGGGAGAGAAGGGGAAGGCAGGTGGCAGGT
GTAGGACTATTCCTTTTAGCAATGTGATTCTTCTTGATTCTTCTCCTGGGCCTCATGTACTACC
TGGGAAGAGCCTGATTTTATATTTGAAAAAAAAAATAAAGACTTTAAATCTGTCTTGAATGTAC
TCTAGACACAATGGTGAGGAATAAAAATTGCACTAGGGACACAGACGGTTACTTTTAAAATAAA
TGTATGAGCATTTTTGCCCA

hide sequence

RefSeq Acc Id:

XM_006255258 ⟹ XP_006255320

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,164,247 (-)	NCBI
Rnor_6.0	19	26,106,713 - 26,119,347 (+)	NCBI
Rnor_5.0	19	37,082,361 - 37,094,976 (+)	NCBI

Sequence:

show sequence

CCAAGATGGCGAGGCGGGGAGGCAAGCGCTTGCAATTGGAAGAGATCACGTGTCTGGGGCGGAG
CCTAGGCCTAGGGGGCGGGATGGAGCAGGGCGGCGCTCTAGGCAGAGCGGGAGGTCTGGGCTTC
GGGCGCTCGCTGGTGGCGGACCCGGAGGCTGCTGCTGCGTGCCGGGGCTCCTTGGCCCGGATCG
AATTCGATCCGGAGCCATGAGTATGGACAAGGCCGAGCTATGCGGGTCTCTGCTCACCTGGTTG
CAGACGTTTCAAGTTTCGCCCCCCTGTGCCAGTCCCCAGGACCTGAGCAGCGGACTCGCCATAG
CCCATGTGCTGAATCAGATAGACCCTTCCTGGTTCAACGACGCATGGCTCCAAGGCATCTCAGA
GGACCCGAGTCCCAGCTGGAGGTTGAAGGTCAGGAAGCTGGAGAGGATCCTACAGAGCTTGGTG
GAATACTCAAAGGATGTTCTGGGGCACCCTGTGTCACATCAGCATCTTCCAGATGTGAGCCTCA
TCGGCGAGTTCTCAAACCCCGCAGAACTCGGCAAACTGCTTCAGTTGGTACTGGCCTGTGCTAT
CAGTTGTGAGAAAAAGCAGGAGTATATCCAAAGAATTATGATGCTGGAGGAATCTGTTCAACAT
GTTGTGATGGAAGCCATCCAGGAGCTCATGACCAAAGACACACCTGATTCCCTGTCACCAGAGA
ATTACGGGAACTTTGATACACAGTCCCGCAGGTACTATTTCCTGAGCGAGGAGGTGGAAGAGGG
TGGCGATCTTCAGCAACACTACCTGGATCTGGAGCGGCAGCTTGTGCTCCTTTCAGAGGAGAAG
CAGAGTCTGGCACAAGAGAATGCTGCCCTACGGGAGAGGGTGGGCCGGTCGGAAGTGGAGAGTG
CCTCAGGCCTCACCGCCAAGAAGCTGTTGCTTCTGCAGTCACAGCTAGAACAGCTCCAGGAGGA
GAATTTCAGGCTGGAGAGTAGCCGGGAAGATGAGCGGCTACGCTGCGTGGAACTGGAGCGTGAG
GTCGCTGAGCTGCAGCAACGGAACCAAGCCCTGGCCAGCTTATCCCAGGAGGCGCAAGCGCTGA
AGGATGAGATGGATGAGCTCCGACAGTCCTCCGAACGTGCAAGGCAGCTGGAGGCCACTCTGAA
CAGCTGCCGTCGTCGCCTGGGTGAGCTCCAGGAGCTCCGGCGGCAGGTGCGGCAGCTGGAGGAG
CGAAATGCAGGGCACGCGGAGCGCACGCGGCAGCTGGAGGATGAGCTGCGCCGGGCCGGATCCC
TGCGTGCCCAGCTCGAGGCTCAGCGCAGGCAGATGCAAGAGTTGCAGGGCCAGTGGCAGGAGGA
GGCCATGAAGGCTGAGAAGTGGCTGTTCGAATGCCAAAACCTAGAGGAAAAGTGTGACCTGTTG
ACAAAAGAGAAGGAGCGGCTGTTGACTGAGAGGGACTCCCTGAGGGAGACCAATGAGGAGCTCC
GATGTGCCCAGTTGCAGCCCAGGGGATTGAATCAGGCTGGCCTCTCCCTGGATCCTACCCCTTC
TGGCCTGGAGAACTTAGCAGCAGAGATCCTGCCTGCAGAGCTCAGAGAGACACTCGTGCGGCTT
CAGCTGGAGAACAAGAGACTGTGCCAGCAAGAGGCTGCGGACCGGGAGCGACAGGAGGAACTGC
AGCGCCACCTGGAGGAGGCCAACCGTGCACGCCATGGGCTGGAAGCGCAGCAACGGCTGAACCA
GCAGCAGCTTTCTGAGCTGAGGGCCCAGGTGGAAGAGCTACAGAAGGCCTTGCAGGAGCAGGGG
GGCAAGACAGACGACCCCACCCTGCTGAAGCGGAAGCTGGAGGATCATCTGCAGAAGCTGCATG
AGGCTGATCTGGAGCTTCAGAGGAAACGGGAATACATTGAGGAGTTGGAGCCTCCCACGGACAG
CAACACTAGGCGGATCGAGGAGCTGCAGGACAGTCTGCAGAAGAAGGATGCAGACCTGCGGGCC
ATGGAGGAACGATACCGCCGCTACGTGGACAAGGCACGCACGGTCATTCAGACCCTGGAACCCA
AGCAGAGGCCACCCAGTGTGGTGTCCCCAGAATTCCATACTCTAAGGTCACAGCTCTGGGAGCG
GAACATGCGAATACGGCAGCTGGAGATGGACTATGAGAAGAGTCGGAGTCGGCAGGAGCAGGAG
GAAAAGCTGCTCATCAGTGCCTGGTACAGCATGGGCATGGCCTTGGAGCATCGGGCTGGGGAAG
AGCATGCCCCTGCCCATGCCCAGTCCTTCCTGGCACAGCAAAGACTGGCCACCAATGCTCGCCG
AGGACCCCTGGGGCGCCAGGCATCTCTGAGCCTTCGCCCCACTGACAAGCACTGACAGACCTCG
ACTTCCTGCTGCCTGCTGAAGTCTTCCAGTTTACATTTACCCAGGCTGGGGCTTTGACCTCGAT
GGAGACTGACTTCTGCCCTCTGCTTCCTTAGATGGGAGAGAAGGGGAAGGCAGGTGGCAGGTGT
AGGACTATTCCTTTTAGCAATGTGATTCTTCTTGATTCTTCTCCTGGGCCTCATGTACTACCTG
GGAAGAGCCTGATTTTATATTTGAAAAAAAAAATAAAGACTTTAAATCTGTCTTGAATGTACTC
TAGACACAATGGTGAGGAATAAAAATTGCACTAGGGACACAGACGGTTACTTTTAAAATAAATG
TATGAGCATTTTTGCCCA

hide sequence

RefSeq Acc Id:

XM_039097683 ⟹ XP_038953611

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,164,250 (-)	NCBI

RefSeq Acc Id:

XM_039097684 ⟹ XP_038953612

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,170,135 (-)	NCBI

RefSeq Acc Id:

XM_039097685 ⟹ XP_038953613

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,170,139 (-)	NCBI

RefSeq Acc Id:

XM_039097686 ⟹ XP_038953614

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	23,151,875 - 23,164,075 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094032	(Get FASTA)	NCBI Sequence Viewer
	NP_001401982	(Get FASTA)	NCBI Sequence Viewer
	XP_006255319	(Get FASTA)	NCBI Sequence Viewer
	XP_006255320	(Get FASTA)	NCBI Sequence Viewer
	XP_038953611	(Get FASTA)	NCBI Sequence Viewer
	XP_038953612	(Get FASTA)	NCBI Sequence Viewer
	XP_038953613	(Get FASTA)	NCBI Sequence Viewer
	XP_038953614	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH99235	(Get FASTA)	NCBI Sequence Viewer
	EDL92169	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001094032 ⟸ NM_001100562

- UniProtKB:

E9PTX3 (UniProtKB/TrEMBL), Q4FZR1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSMDKAELCGSLLTWLQTFQVSPPCASPQDLSSGLAIAHVLNQIDPSWFNDAWLQGISEDPSPS
WRLKVRKLERILQSLVEYSKDVLGHPVSHQHLPDVSLIGEFSNPAELGKLLQLVLACAISCEKK
QEYIQRIMMLEESVQHVVMEAIQELMTKDTPDSLSPENYGNFDTQSRRYYFLSEEVEEGGDLQQ
HYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQEENFRLE
SSREDERLRCVELEREVAELQQRNQALASLSQEAQALKDEMDELRQSSERARQLEATLNSCRRR
LGELQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQVRQMQELQGQWQEEAM
KAEKWLFECQNLEEKCDLLTKEKERLLTERDSLRETNEELRCAQLQPRGLNQAGLSLDPTPSGL
ENLAAEILPAELRETLVRLQLENKRLCQQEAADRERQEELQRHLEEANRARHGLEAQQRLNQQQ
LSELRAQVEELQKALQEQGGKTDDPTLLKRKLEDHLQKLHEADLELQRKREYIEELEPPTDSNT
RRIEELQDSLQKKDADLRAMEERYRRYVDKARTVIQTLEPKQRPPSVVSPEFHTLRSQLWERNM
RIRQLEMDYEKSRSRQEQEEKLLISAWYSMGMALEHRAGEEHAPAHAQSFLAQQRLATNARRGP
LGRQASLSLRPTDKH

hide sequence

RefSeq Acc Id:

XP_006255320 ⟸ XM_006255258

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSMDKAELCGSLLTWLQTFQVSPPCASPQDLSSGLAIAHVLNQIDPSWFNDAWLQGISEDPSPS
WRLKVRKLERILQSLVEYSKDVLGHPVSHQHLPDVSLIGEFSNPAELGKLLQLVLACAISCEKK
QEYIQRIMMLEESVQHVVMEAIQELMTKDTPDSLSPENYGNFDTQSRRYYFLSEEVEEGGDLQQ
HYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQEENFRLE
SSREDERLRCVELEREVAELQQRNQALASLSQEAQALKDEMDELRQSSERARQLEATLNSCRRR
LGELQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQMQELQGQWQEEAMKAE
KWLFECQNLEEKCDLLTKEKERLLTERDSLRETNEELRCAQLQPRGLNQAGLSLDPTPSGLENL
AAEILPAELRETLVRLQLENKRLCQQEAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSE
LRAQVEELQKALQEQGGKTDDPTLLKRKLEDHLQKLHEADLELQRKREYIEELEPPTDSNTRRI
EELQDSLQKKDADLRAMEERYRRYVDKARTVIQTLEPKQRPPSVVSPEFHTLRSQLWERNMRIR
QLEMDYEKSRSRQEQEEKLLISAWYSMGMALEHRAGEEHAPAHAQSFLAQQRLATNARRGPLGR
QASLSLRPTDKH

hide sequence

RefSeq Acc Id:

XP_006255319 ⟸ XM_006255257

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSMDKAELCGSLLTWLQTFQVSPPCASPQDLSSGLAIAHVLNQIDPSWFNDAWLQGISEDPSPS
WRLKVRKLERILQSLVEYSKDVLGHPVSHQHLPDVSLIGEFSNPAELGKLLQLVLACAISCEKK
QEYIQRIMMLEESVQHVVMEAIQELMTKDTPDSLSPENYGNFDTQSRRYYFLSEEVEEGGDLQQ
HYLDLERQLVLLSEEKQSLAQENAALRERVGRSEVESASGLTAKKLLLLQSQLEQLQEENFRLE
SSREDERLRCVELEREVAELQQRNQALASLSQEAQALKDEMDELRQSSERARQLEATLNSCRRR
LGELQELRRQVRQLEERNAGHAERTRQLEDELRRAGSLRAQLEAQRRQMQELQGQWQEEAMKAE
KWLFECQNLEEKCDLLTKEKERLLTERDSLRETNEELRCAQLQPRGLNQAGLSLDPTPSGLENL
AAEILPAELRETLVRLQLENKRLCQQEAADRERQEELQRHLEEANRARHGLEAQQRLNQQQLSE
LRAQVEELQKALQEQGGKTDDPTLLKRKLEDHLQKLHEADLELQRKREYIEELEPPTDSNTARR
IEELQDSLQKKDADLRAMEERYRRYVDKARTVIQTLEPKQRPPSVVSPEFHTLRSQLWERNMRI
RQLEMDYEKSRSRQEQEEKLLISAWYSMGMALEHRAGEEHAPAHAQSFLAQQRLATNARRGPLG
RQASLSLRPTDKH

hide sequence

RefSeq Acc Id:

ENSRNOP00000033999 ⟸ ENSRNOT00000035987

RefSeq Acc Id:	XP_038953613 ⟸ XM_039097685
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038953612 ⟸ XM_039097684
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038953611 ⟸ XM_039097683
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038953614 ⟸ XM_039097686
- Peptide Label:	isoform X6

Protein Domains

Calponin-homology (CH) Hook C-terminal HOOK N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PTX3-F1-model_v2	AlphaFold	E9PTX3	1-719	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701034

Promoter ID:

EPDNEW_R11558

Type:

multiple initiation site

Name:

Hook2_1

Description:

hook microtubule-tethering protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	26,106,836 - 26,106,896	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310171	AgrOrtholog
BioCyc Gene	G2FUF-6137	BioCyc
Ensembl Genes	ENSRNOG00000003682	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000033999	ENTREZGENE
	ENSRNOP00000033999.5	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035987	ENTREZGENE
	ENSRNOT00000035987.5	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7444932	IMAGE-MGC_LOAD
InterPro	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	HOOK	UniProtKB/TrEMBL
	HOOK_N	UniProtKB/TrEMBL
KEGG Report	rno:304669	UniProtKB/TrEMBL
MGC_CLONE	MGC:116416	IMAGE-MGC_LOAD
NCBI Gene	304669	ENTREZGENE
PANTHER	HOOK PROTEINS	UniProtKB/TrEMBL
	PROTEIN HOOK HOMOLOG 2	UniProtKB/TrEMBL
Pfam	HOOK	UniProtKB/TrEMBL
	HOOK_N	UniProtKB/TrEMBL
PhenoGen	Hook2	PhenoGen
PROSITE	PS50021	UniProtKB/TrEMBL
Superfamily-SCOP	Hook domain	UniProtKB/TrEMBL
UniProt	E9PTX3	ENTREZGENE, UniProtKB/TrEMBL
	Q4FZR1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-09-16	Hook2	hook microtubule-tethering protein 2	Hook2	hook homolog 2 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Hook2	hook homolog 2 (Drosophila)	Hook2_predicted	hook homolog 2 (Drosophila) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Hook2_predicted	hook homolog 2 (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar