Rab32 (RAB32, member RAS oncogene family)

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Gene: Rab32 (RAB32, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab32

Name:

RAB32, member RAS oncogene family

RGD ID:

1559997

Description:

Predicted to enable several functions, including AP-1 adaptor complex binding activity; AP-3 adaptor complex binding activity; and BLOC-2 complex binding activity. Predicted to be involved in several processes, including endosome to melanosome transport; melanosome assembly; and phagosome maturation. Predicted to be located in several cellular components, including cytoplasmic vesicle; mitochondria-associated endoplasmic reticulum membrane; and mitochondrial outer membrane. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Orthologous to human RAB32 (RAB32, member RAS oncogene family); INTERACTS WITH 1,2-dimethylhydrazine; 1-benzylpiperazine; 1-naphthyl isothiocyanate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC365042; ras-related protein Rab-32; RGD1559997; similar to RAB32

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAB32 (RAB32, member RAS oncogene family)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rab32 (RAB32, member RAS oncogene family)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rab32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAB32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAB32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rab32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAB32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAB32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rab32 (RAB32, member RAS oncogene family)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAB32 (RAB32, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Mus musculus (house mouse):	Rab32 (RAB32, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Danio rerio (zebrafish):	rab32b (RAB32b, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	rab32a (RAB32a, member RAS oncogene family)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)
Caenorhabditis elegans (roundworm):	glo-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|sonicParanoid)
Drosophila melanogaster (fruit fly):	Rab32	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|sonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	4,946,193 - 4,961,003 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	4,945,036 - 4,960,934 (-)	Ensembl
Rnor_6.0	1	4,638,663 - 4,653,220 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	4,637,491 - 4,653,210 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	6,299,748 - 6,314,539 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	5,203,908 - 5,218,416 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	1	3,479,984 - 3,494,673 (-)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

allergic contact dermatitis (ISO)

Experimental Liver Cirrhosis (ISO)

fragile X syndrome (ISO)

human immunodeficiency virus infectious disease (ISO)

leprosy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (EXP,ISO)

1-benzylpiperazine (EXP)

1-chloro-2,4-dinitrobenzene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-amino-2-deoxy-D-glucopyranose (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucosamine (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

beta-D-glucosamine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

fluvastatin (ISO)

folic acid (ISO)

fragrance (ISO)

furan (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

leflunomide (EXP)

LY294002 (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP,ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation (ISO)

endosome to melanosome transport (ISO)

melanosome assembly (ISO)

mitochondrion organization (ISO)

phagosome maturation (ISO)

protein localization to membrane (ISO)

Cellular Component

early endosome (ISO)

early endosome lumen (ISO)

endoplasmic reticulum (ISO)

melanosome (ISO)

melanosome membrane (ISO)

membrane (ISO)

mitochondria-associated endoplasmic reticulum membrane (ISO)

mitochondrial outer membrane (ISO)

mitochondrion (ISO)

phagocytic vesicle (ISO)

Molecular Function

AP-1 adaptor complex binding (ISO)

AP-2 adaptor complex binding (ISO)

AP-3 adaptor complex binding (ISO)

BLOC-2 complex binding (ISO)

GTP-dependent protein binding (ISO)

GTPase activity (ISO)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:18614015	PMID:19717423	PMID:21255211	PMID:21808068	PMID:22511774	PMID:23084991	PMID:25767741	PMID:26620560

Genomics

Comparative Map Data

Rab32
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	4,946,193 - 4,961,003 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	1	4,945,036 - 4,960,934 (-)	Ensembl
Rnor_6.0	1	4,638,663 - 4,653,220 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	4,637,491 - 4,653,210 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	6,299,748 - 6,314,539 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	5,203,908 - 5,218,416 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	1	3,479,984 - 3,494,673 (-)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

RAB32
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	146,543,833 - 146,554,953 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	6	146,543,833 - 146,554,953 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	146,864,969 - 146,876,089 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	146,906,521 - 146,917,782 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	6	146,906,520 - 146,917,779	NCBI
Celera	6	147,605,264 - 147,616,521 (+)	NCBI
Cytogenetic Map	6	q24.3	NCBI
HuRef	6	144,428,711 - 144,439,665 (+)	NCBI		HuRef
CHM1_1	6	147,128,062 - 147,139,320 (+)	NCBI		CHM1_1

Rab32
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	10,420,783 - 10,433,951 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	10	10,420,746 - 10,434,009 (-)	Ensembl
GRCm38	10	10,545,039 - 10,558,207 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	10,545,002 - 10,558,265 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	10,264,837 - 10,278,005 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	10	10,235,229 - 10,248,397 (-)	NCBI			mm8
Celera	10	10,440,276 - 10,453,408 (-)	NCBI		Celera
Cytogenetic Map	10	A1	NCBI

Rab32
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	14,171,123 - 14,177,577 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	14,171,123 - 14,177,255 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAB32
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Mhudiblu_PPA_v0	6	144,339,323 - 144,354,885 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

RAB32
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	37,706,809 - 37,719,044 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	37,712,142 - 37,718,266 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	38,588,880 - 38,611,342 (+)	NCBI
ROS_Cfam_1.0	1	37,866,146 - 37,889,054 (+)	NCBI
ROS_Cfam_1.0 Ensembl	1	37,865,534 - 37,889,049 (+)	Ensembl
UMICH_Zoey_3.1	1	37,743,864 - 37,766,334 (+)	NCBI
UNSW_CanFamBas_1.0	1	37,615,197 - 37,637,672 (+)	NCBI
UU_Cfam_GSD_1.0	1	37,945,159 - 37,967,854 (+)	NCBI

Rab32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	132,783,627 - 132,799,818 (+)	NCBI
SpeTri2.0	NW_004936489	35,620 - 51,809 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB32
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	18,870,875 - 19,097,892 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	19,076,301 - 19,097,647 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	21,320,352 - 21,341,852 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB32
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	25,265,831 - 25,281,106 (-)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666040	201,227,806 - 201,242,889 (-)	NCBI	Vero_WHO_p1.0

Rab32
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624753	7,900,027 - 7,917,944 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH136840

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	4,946,254 - 4,946,390 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	4,638,725 - 4,638,860	NCBI	Rnor6.0
Rnor_5.0	1	6,299,810 - 6,299,945	UniSTS	Rnor5.0
RGSC_v3.4	1	5,203,970 - 5,204,105	UniSTS	RGSC3.4
Celera	1	3,480,046 - 3,480,181	UniSTS
Cytogenetic Map	1	p13	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	24744506	Rat
2298546	Neuinf4	Neuroinflammation QTL 4	5.1		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	1	1	28736750	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
1300170	Rf6	Renal function QTL 6	3.14		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	1	4162807	11481482	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	4393289	49393289	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	616
Count of miRNA genes:	274
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000019121
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		24	11	18	11				35	25	11
Low	1	43	33	30	1	30	8	11	74		13		8
Below cutoff											3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000019121 ⟹ ENSRNOP00000019121

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	4,945,036 - 4,960,934 (-)	Ensembl
Rnor_6.0 Ensembl	1	4,637,491 - 4,653,210 (-)	Ensembl

RefSeq Acc Id:

NM_001108902 ⟹ NP_001102372

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	4,946,193 - 4,961,003 (-)	NCBI
Rnor_6.0	1	4,638,663 - 4,653,220 (-)	NCBI
Rnor_5.0	1	6,299,748 - 6,314,539 (-)	NCBI
RGSC_v3.4	1	5,203,908 - 5,218,416 (-)	RGD
Celera	1	3,479,984 - 3,494,673 (-)	RGD

Sequence:

show sequence

GTAGGGTGCACCCAGACTGTCCTGGGCCAGAAGCGCGCAGTAGGTTCCGGGTCCCGTGACTCGC
ATGACTGCATCGCCGGGTGCGCGGACCGAGGATCTGCCCTGTCCCCCTTGAGAGAGAAGTTCCC
ACGGCCGTGGCGCCCATGGCGGGCGAGAGACTCGGGCAACAGGGCGAAACGGCCACTGCGGTTC
CGGAGACCCGAGAGCACCTCTTTAAGGTGCTGGTCATCGGCGAGCTCGGCGTGGGCAAGACAAG
CATCATCAAGCGCTATGTGCACCAGCTCTTCTCCCAGAACTACCGCGCCACCATTGGCGTGGAC
TTCGCCCTCAAAGTCCTCAACTGGGACAGCAGGACGCTCGTGCGCTTGCAGCTGTGGGACATCG
CTGGACAGGAGCGGTTTGGCAACATGACCCGAGTGTACTACAAGGAGGCTCTTGGAGCATTTGT
AGTCTTTGATATATCGAGAAGTTCCACATTTGATGCAGTCCTAAAATGGAAAAATGATCTGGAT
AGCAAAGTTCATCTTCCCAACGGAAGTCCCATTCCTGCTGTCCTTCTAGCTAACAAATGTGACC
AGAAGAAGGACAGCAGCCAGAGTCCTTCCCAGATGAACCAGTTCTGTAAAGACCATGGCTTCAT
TGGATGGTTTGAAACCTCTGCCAAGGATAACATAAACATCGATGAGGCCACCCGCTTCCTAGTG
GAAAACATGCTCGCGAACCAGCAAAGTTTTCCTAGGGAAGAAATCGACATGGACAAAATTAAAC
TGGTGGAGGAGCCCCCCACGACAAAGCCCAAGTCCCAGTGCTGCTGATGTGTCTCCATGGTCTT
GCATGCGCATGCGTCTGAGGGTGCCCCCTCCTAACCCTCGGTGCCATTGTCCGCTGTGAATCTC
CCTCAGGGGCGCTTTATCATTCATCTGCACATGAACCGCCCATCTGAACTGGAGATCCCAGGAG
CACTGTTCCCACTAGAGGCTCTTTGATTTACCAGAGGACCCCTCAGGCTCTTTGTACTGCTAAA
GGCAGACTAATGTTTACAGCCTTTGAAATATTTTGTACACGAATTTCAAGGGTTAGCTTTTAAT
GTGGTTGGCCAGTAGAAAAACTTCCCTCCTCCCCTTGGTGATCCTGACATCTTGAGTGTCTTTT
TTCCTGTATACATCCTCACCTAAGCACGGGTTGTTCTTGGTTTTTGTTTGTCTTATTGTTTGTT
TTCTTTCTTTAAGGTGGTAGCTACGAAGACTTGAAGGTCCCACGCAGTTATATCCTAGTCAAAA
CTTGGTGCGTCGTGTAGAGTTTTTATCTTTAAATAACATGATTCTAGAACGCATAGCCATTGTG
TAACTGAGTCACTCTGAATCACCCTTGAGAGCCCCTTCTTTAATTAGTCAAGAAGTACCGAGCT
GGGGATGTGGCTCACTTAGAGAGCGTTTACCTTGAATGTGATAGATGCTCGAGAGATCAAAGAA
GTTAGCACCATACCTGTTCTGTGGGTGTCTCCCTCTGGATCCTCTCTAGGGGTAGTTGCCACTC
CCACTTGGAAACAATACAAATGAACTTTTTTTTTCTTCTGCCCTCTAGTCTGTGTTTATAGCCT
AGAACCATATTAAAGATACAGTGGTACTAAGAGGAACTTGTCTTTCCAGACCCGTCTTGGTAAT
AATGGTCAGGAGGAGAATTCTTTTTCGAAGCACATGCAAGTTTATGCAAAAGTTTCTGTAGTGT
AAAACCTGAAAGAAAGTAAACCATGTCTAGTATTGTCTATGGTTTTTGGGTACTGGTTGTATAA
TGCCTAGGACACTCAGGAAGATCCTCTATATCGCATTGCCTTTCACTCAGTGAAAGAAACGAAT
AGATATTTTAACCTAAGCCTGTGTGCTGAATGAATGTCATTCTAGGAAGGTCCTTTTCTGGTGA
AGAAAATGTGTTTGACTGGGGTGTTGGTTCACCTCTGTTGCCCCAGCATGTAGGAAACAGAGGC
GAAGGGTAGGAGTTCGTGGCATATCTTGGCTACATAGCCAGCTCAAGGACAGCCTGTGCTACAG
AAGAGGCTTTCTCCAAAAAAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102372	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93708	(Get FASTA)	NCBI Sequence Viewer
	EDL93709	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102372 ⟸ NM_001108902

- UniProtKB:

D4AEG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGERLGQQGETATAVPETREHLFKVLVIGELGVGKTSIIKRYVHQLFSQNYRATIGVDFALKV
LNWDSRTLVRLQLWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHL
PNGSPIPAVLLANKCDQKKDSSQSPSQMNQFCKDHGFIGWFETSAKDNINIDEATRFLVENMLA
NQQSFPREEIDMDKIKLVEEPPTTKPKSQCC

hide sequence

RefSeq Acc Id:

ENSRNOP00000019121 ⟸ ENSRNOT00000019121

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AEG2-F1-model_v2	AlphaFold	D4AEG2	1-223	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689487

Promoter ID:

EPDNEW_R12

Type:

initiation region

Name:

Rab32_1

Description:

RAB32, member RAS oncogene family

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	4,653,163 - 4,653,223	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Damaging Variants

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	5218150	5218151	G	T	snv	SS/JrHsdMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559997	AgrOrtholog
BioCyc Gene	G2FUF-62413	BioCyc
Ensembl Genes	ENSRNOG00000014258	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000019121	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019121	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Rab29/Rab38/Rab32	UniProtKB/TrEMBL
	Ras_GTPase	UniProtKB/TrEMBL
	Small_GTP-bd	UniProtKB/TrEMBL
KEGG Report	rno:365042	UniProtKB/TrEMBL
NCBI Gene	365042	ENTREZGENE
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab32	PhenoGen
PROSITE	RAS	UniProtKB/TrEMBL
SMART	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/TrEMBL
UniProt	D4AEG2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Rab32	RAB32, member RAS oncogene family	RGD1559997_predicted	similar to RAB32 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1559997_predicted	similar to RAB32 (predicted)	LOC365042	similar to RAB32	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC365042	similar to RAB32			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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