Rims1 (regulating synaptic membrane exocytosis 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rims1 (regulating synaptic membrane exocytosis 1) Rattus norvegicus
Analyze
Symbol: Rims1
Name: regulating synaptic membrane exocytosis 1
RGD ID: 620000
Description: Enables SH3 domain binding activity; protein kinase binding activity; and small GTPase binding activity. Involved in long-term synaptic potentiation; positive regulation of inhibitory postsynaptic potential; and positive regulation of synaptic vesicle priming. Located in presynaptic membrane. Is active in glutamatergic synapse and presynaptic active zone cytoplasmic component. Orthologous to human RIMS1 (regulating synaptic membrane exocytosis 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: rab-3-interacting molecule 1; Rab3 effector; rab3-interacting molecule 1; regulating synaptic membrane exocytosis protein 1; RIM 1; Rim1; RIM1a; Rim1b protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8932,193,352 - 32,692,998 (-)NCBIGRCr8
mRatBN7.2924,696,959 - 25,196,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx933,205,759 - 33,705,668 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0938,311,750 - 38,811,445 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0936,628,202 - 37,133,961 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0928,440,408 - 28,973,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0927,284,845 - 27,813,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4921,089,088 - 21,594,679 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1921,090,501 - 21,596,093 (-)NCBI
Celera922,268,968 - 22,762,652 (-)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional interaction of the active zone proteins Munc13-1 and RIM1 in synaptic vesicle priming. Betz A, etal., Neuron 2001 Apr;30(1):183-96.
2. Direct interaction of the rab3 effector rim with ca2+ channels, snap-25, and synaptotagmin. Coppola T, etal., J Biol Chem 2001 Aug 31;276(35):32756-62.
3. RIM proteins activate vesicle priming by reversing autoinhibitory homodimerization of Munc13. Deng L, etal., Neuron. 2011 Jan 27;69(2):317-31. doi: 10.1016/j.neuron.2011.01.005.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. SAD: a presynaptic kinase associated with synaptic vesicles and the active zone cytomatrix that regulates neurotransmitter release. Inoue E, etal., Neuron. 2006 Apr 20;50(2):261-75.
6. RIM proteins tether Ca2+ channels to presynaptic active zones via a direct PDZ-domain interaction. Kaeser PS, etal., Cell. 2011 Jan 21;144(2):282-95. doi: 10.1016/j.cell.2010.12.029.
7. RIM1alpha phosphorylation at serine-413 by protein kinase A is not required for presynaptic long-term plasticity or learning. Kaeser PS, etal., Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14680-5. doi: 10.1073/pnas.0806679105. Epub 2008 Sep 17.
8. Interaction between liprin-alpha and GIT1 is required for AMPA receptor targeting. Ko J, etal., J Neurosci. 2003 Mar 1;23(5):1667-77.
9. Solution structure of the RIM1alpha PDZ domain in complex with an ELKS1b C-terminal peptide. Lu J, etal., J Mol Biol. 2005 Sep 16;352(2):455-66.
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. Cast: a novel protein of the cytomatrix at the active zone of synapses that forms a ternary complex with RIM1 and munc13-1. Ohtsuka T, etal., J Cell Biol 2002 Aug 5;158(3):577-90. Epub 2002 Aug 5.
12. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Rab3 GTPase-activating protein regulates synaptic transmission and plasticity through the inactivation of Rab3. Sakane A, etal., Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):10029-34. Epub 2006 Jun 16.
16. RIM1alpha forms a protein scaffold for regulating neurotransmitter release at the active zone. Schoch S, etal., Nature 2002 Jan 17;415(6869):321-6.
17. Adapter protein 14-3-3 is required for a presynaptic form of LTP in the cerebellum. Simsek-Duran F, etal., Nat Neurosci. 2004 Dec;7(12):1296-8. Epub 2004 Nov 14.
18. Rim, a component of the presynaptic active zone and modulator of exocytosis, binds 14-3-3 through its N terminus. Sun L, etal., J Biol Chem 2003 Oct 3;278(40):38301-9. Epub 2003 Jul 18.
19. A trans-synaptic nanocolumn aligns neurotransmitter release to receptors. Tang AH, etal., Nature. 2016 Aug 11;536(7615):210-4. doi: 10.1038/nature19058. Epub 2016 Jul 27.
20. The RIM/NIM family of neuronal C2 domain proteins. Interactions with Rab3 and a new class of Src homology 3 domain proteins. Wang Y, etal., J Biol Chem 2000 Jun 30;275(26):20033-44.
21. Rim is a putative Rab3 effector in regulating synaptic-vesicle fusion. Wang Y, etal., Nature 1997 Aug 7;388(6642):593-8.
22. A family of RIM-binding proteins regulated by alternative splicing: Implications for the genesis of synaptic active zones. Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.
23. Munc13-1 is required for presynaptic long-term potentiation. Yang Y and Calakos N, J Neurosci. 2011 Aug 17;31(33):12053-7.
Additional References at PubMed
PMID:11797010   PMID:14734538   PMID:16704978   PMID:17114649   PMID:17124501   PMID:17630786   PMID:19036990   PMID:19812333   PMID:20130189   PMID:20452978   PMID:21144999   PMID:21712437  
PMID:22248876   PMID:22658674   PMID:22753485   PMID:23751498   PMID:23999003   PMID:24290762   PMID:25730884   PMID:27537483   PMID:29476059   PMID:30661983  


Genomics

Comparative Map Data
Rims1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8932,193,352 - 32,692,998 (-)NCBIGRCr8
mRatBN7.2924,696,959 - 25,196,404 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx933,205,759 - 33,705,668 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0938,311,750 - 38,811,445 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0936,628,202 - 37,133,961 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0928,440,408 - 28,973,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0927,284,845 - 27,813,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4921,089,088 - 21,594,679 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1921,090,501 - 21,596,093 (-)NCBI
Celera922,268,968 - 22,762,652 (-)NCBICelera
Cytogenetic Map9q13NCBI
RIMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38671,886,550 - 72,403,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl671,886,550 - 72,403,150 (+)EnsemblGRCh38hg38GRCh38
GRCh37672,596,253 - 73,112,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36672,653,371 - 73,169,229 (+)NCBINCBI36Build 36hg18NCBI36
Build 34672,653,447 - 73,167,137NCBI
Celera672,990,111 - 73,506,277 (+)NCBICelera
Cytogenetic Map6q13NCBI
HuRef669,794,715 - 70,311,090 (+)NCBIHuRef
CHM1_1672,762,989 - 73,279,548 (+)NCBICHM1_1
T2T-CHM13v2.0673,067,717 - 73,580,721 (+)NCBIT2T-CHM13v2.0
Rims1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39122,356,196 - 22,845,239 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl122,356,475 - 22,845,203 (-)EnsemblGRCm39 Ensembl
GRCm38122,285,972 - 22,806,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl122,286,251 - 22,805,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv37122,278,503 - 22,422,924 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37122,475,024 - 22,812,563 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36122,271,058 - 22,414,692 (-)NCBIMGSCv36mm8
Celera122,160,697 - 22,651,999 (-)NCBICelera
Cytogenetic Map1A5NCBI
cM Map18.54NCBI
Rims1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554886,936,952 - 7,197,022 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554886,999,128 - 7,196,583 (+)NCBIChiLan1.0ChiLan1.0
RIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2591,867,737 - 92,384,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1689,793,234 - 90,309,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0669,714,807 - 70,231,260 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1673,304,152 - 73,523,422 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl673,008,176 - 73,523,422 (+)Ensemblpanpan1.1panPan2
RIMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11234,473,974 - 34,661,893 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1234,474,033 - 34,659,410 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1234,042,997 - 34,520,866 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01234,724,669 - 35,202,130 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1234,724,007 - 35,202,201 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11234,260,108 - 34,737,956 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01234,298,396 - 34,775,746 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01234,408,939 - 34,886,369 (+)NCBIUU_Cfam_GSD_1.0
Rims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494669,448,844 - 69,892,776 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366183,606,524 - 4,047,711 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366183,678,400 - 4,047,994 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl151,785,495 - 52,244,934 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1151,785,140 - 52,246,456 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2158,399,458 - 58,584,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIMS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1172,690,430 - 3,176,794 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl172,690,418 - 3,176,738 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660588,621,932 - 9,124,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Rims1
3894 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:64
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000015453
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat

Markers in Region
D9Wox34  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,699,061 - 24,699,239 (+)MAPPERmRatBN7.2
Rnor_6.0928,442,437 - 28,442,614NCBIRnor6.0
Rnor_5.0927,285,048 - 27,285,225UniSTSRnor5.0
RGSC_v3.4921,089,291 - 21,089,468UniSTSRGSC3.4
Celera922,269,171 - 22,269,348UniSTS
Cytogenetic Map9q13UniSTS
BF386262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,957,367 - 24,957,546 (+)MAPPERmRatBN7.2
Rnor_6.0928,702,118 - 28,702,296NCBIRnor6.0
Rnor_5.0927,543,274 - 27,543,452UniSTSRnor5.0
RGSC_v3.4921,354,754 - 21,354,932UniSTSRGSC3.4
Celera922,525,873 - 22,526,051UniSTS
RH 3.4 Map9231.6UniSTS
Cytogenetic Map9q13UniSTS
BE101604  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,191,173 - 25,191,381 (+)MAPPERmRatBN7.2
Rnor_6.0928,998,237 - 28,998,444NCBIRnor6.0
Rnor_6.0928,968,055 - 28,968,262NCBIRnor6.0
Rnor_5.0927,838,292 - 27,838,499UniSTSRnor5.0
Rnor_5.0927,808,328 - 27,808,535UniSTSRnor5.0
RGSC_v3.4921,589,509 - 21,589,716UniSTSRGSC3.4
Celera922,757,516 - 22,757,723UniSTS
RH 3.4 Map9233.2UniSTS
Cytogenetic Map9q13UniSTS
BF400263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,104,426 - 25,104,643 (+)MAPPERmRatBN7.2
Rnor_6.0928,849,449 - 28,849,665NCBIRnor6.0
Rnor_5.0927,690,840 - 27,691,056UniSTSRnor5.0
RGSC_v3.4921,502,187 - 21,502,403UniSTSRGSC3.4
Celera922,671,338 - 22,671,554UniSTS
RH 3.4 Map9231.9UniSTS
Cytogenetic Map9q13UniSTS
BF401631  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,143,220 - 25,143,314 (+)MAPPERmRatBN7.2
Rnor_6.0928,920,096 - 28,920,189NCBIRnor6.0
Rnor_6.0928,890,184 - 28,890,277NCBIRnor6.0
Rnor_5.0927,760,784 - 27,760,877UniSTSRnor5.0
Rnor_5.0927,730,872 - 27,730,965UniSTSRnor5.0
RGSC_v3.4921,541,202 - 21,541,295UniSTSRGSC3.4
Celera922,709,517 - 22,709,610UniSTS
RH 3.4 Map9219.69UniSTS
Cytogenetic Map9q13UniSTS
BE113512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,191,827 - 25,191,996 (+)MAPPERmRatBN7.2
Rnor_6.0928,998,891 - 28,999,059NCBIRnor6.0
Rnor_6.0928,968,709 - 28,968,877NCBIRnor6.0
Rnor_5.0927,838,946 - 27,839,114UniSTSRnor5.0
Rnor_5.0927,808,982 - 27,809,150UniSTSRnor5.0
RGSC_v3.4921,590,163 - 21,590,331UniSTSRGSC3.4
Celera922,758,170 - 22,758,338UniSTS
RH 3.4 Map9236.0UniSTS
Cytogenetic Map9q13UniSTS
BF405023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,983,145 - 24,983,237 (+)MAPPERmRatBN7.2
Rnor_6.0928,727,891 - 28,727,982NCBIRnor6.0
Rnor_5.0927,568,933 - 27,569,024UniSTSRnor5.0
RGSC_v3.4921,380,414 - 21,380,505UniSTSRGSC3.4
Celera922,550,926 - 22,551,017UniSTS
RH 3.4 Map9235.6UniSTS
Cytogenetic Map9q13UniSTS
AU048318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,795,319 - 24,795,543 (+)MAPPERmRatBN7.2
Rnor_6.0928,538,872 - 28,539,095NCBIRnor6.0
Rnor_5.0927,380,940 - 27,381,163UniSTSRnor5.0
RGSC_v3.4921,185,587 - 21,185,810UniSTSRGSC3.4
Celera922,365,008 - 22,365,231UniSTS
Cytogenetic Map9q13UniSTS
RH138351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,986,370 - 24,986,490 (+)MAPPERmRatBN7.2
Rnor_6.0928,731,116 - 28,731,235NCBIRnor6.0
Rnor_5.0927,572,158 - 27,572,277UniSTSRnor5.0
RGSC_v3.4921,383,639 - 21,383,758UniSTSRGSC3.4
Celera922,554,151 - 22,554,270UniSTS
RH 3.4 Map9236.0UniSTS
Cytogenetic Map9q13UniSTS
BF390485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,104,327 - 25,104,541 (+)MAPPERmRatBN7.2
Rnor_6.0928,849,350 - 28,849,563NCBIRnor6.0
Rnor_5.0927,690,741 - 27,690,954UniSTSRnor5.0
RGSC_v3.4921,502,088 - 21,502,301UniSTSRGSC3.4
Celera922,671,239 - 22,671,452UniSTS
RH 3.4 Map9236.6UniSTS
Cytogenetic Map9q13UniSTS
AI406393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,173,784 - 25,173,974 (+)MAPPERmRatBN7.2
Rnor_6.0928,980,852 - 28,981,041NCBIRnor6.0
Rnor_6.0928,950,668 - 28,950,857NCBIRnor6.0
Rnor_5.0927,820,907 - 27,821,096UniSTSRnor5.0
Rnor_5.0927,790,941 - 27,791,130UniSTSRnor5.0
RGSC_v3.4921,572,122 - 21,572,311UniSTSRGSC3.4
Celera922,740,140 - 22,740,329UniSTS
RH 3.4 Map9232.1UniSTS
Cytogenetic Map9q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 58 1
Low 3 23 12 4 4 16 16 38 2
Below cutoff 19 10 7 11 7 6 6 8 2 8 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001398595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_052829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF007836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015453   ⟹   ENSRNOP00000015454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)Ensembl
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079684   ⟹   ENSRNOP00000075220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)Ensembl
Rnor_6.0 Ensembl928,442,813 - 28,972,835 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083915   ⟹   ENSRNOP00000075545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)Ensembl
Rnor_6.0 Ensembl928,442,810 - 28,732,919 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086967   ⟹   ENSRNOP00000074013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)Ensembl
Rnor_6.0 Ensembl928,442,813 - 28,972,835 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091865   ⟹   ENSRNOP00000068599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,368 (-)Ensembl
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099201   ⟹   ENSRNOP00000086155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,368 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109109   ⟹   ENSRNOP00000085276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,368 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110625   ⟹   ENSRNOP00000095741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl924,698,854 - 25,196,631 (-)Ensembl
RefSeq Acc Id: NM_001398595   ⟹   NP_001385524
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,352 - 32,692,772 (-)NCBI
mRatBN7.2924,696,961 - 25,196,404 (-)NCBI
RefSeq Acc Id: NM_052829   ⟹   NP_439894
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,352 - 32,692,772 (-)NCBI
mRatBN7.2924,696,961 - 25,196,404 (-)NCBI
Rnor_6.0928,442,234 - 28,973,246 (-)NCBI
Rnor_5.0927,284,845 - 27,813,498 (-)NCBI
RGSC_v3.4921,089,088 - 21,594,679 (-)RGD
Celera922,268,968 - 22,762,652 (-)RGD
Sequence:
RefSeq Acc Id: XM_017596657   ⟹   XP_017452146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596667   ⟹   XP_017452156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596670   ⟹   XP_017452159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596671   ⟹   XP_017452160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596672   ⟹   XP_017452161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596673   ⟹   XP_017452162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596678   ⟹   XP_017452167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596679   ⟹   XP_017452168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084259   ⟹   XP_038940187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084260   ⟹   XP_038940188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084261   ⟹   XP_038940189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084263   ⟹   XP_038940191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084264   ⟹   XP_038940192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084265   ⟹   XP_038940193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084268   ⟹   XP_038940196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084269   ⟹   XP_038940197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084270   ⟹   XP_038940198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084271   ⟹   XP_038940199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084273   ⟹   XP_038940201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084274   ⟹   XP_038940202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084275   ⟹   XP_038940203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084276   ⟹   XP_038940204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084277   ⟹   XP_038940205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084278   ⟹   XP_038940206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084279   ⟹   XP_038940207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084282   ⟹   XP_038940210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084283   ⟹   XP_038940211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084285   ⟹   XP_038940213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084286   ⟹   XP_038940214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084287   ⟹   XP_038940215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084288   ⟹   XP_038940216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,284,682 - 32,692,998 (-)NCBI
mRatBN7.2924,788,289 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084290   ⟹   XP_038940218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,389,643 (-)NCBI
mRatBN7.2924,696,959 - 24,893,416 (-)NCBI
RefSeq Acc Id: XM_039084291   ⟹   XP_038940219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,382,482 (-)NCBI
mRatBN7.2924,696,959 - 24,886,020 (-)NCBI
RefSeq Acc Id: XM_039084292   ⟹   XP_038940220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,383,293 (-)NCBI
mRatBN7.2924,696,959 - 24,886,913 (-)NCBI
RefSeq Acc Id: XM_039084293   ⟹   XP_038940221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,301,155 (-)NCBI
mRatBN7.2924,696,959 - 24,803,715 (-)NCBI
RefSeq Acc Id: XM_039084294   ⟹   XP_038940222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_063267779   ⟹   XP_063123849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
RefSeq Acc Id: XM_063267781   ⟹   XP_063123851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
RefSeq Acc Id: XM_063267782   ⟹   XP_063123852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
RefSeq Acc Id: XM_063267783   ⟹   XP_063123853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,611,137 (-)NCBI
RefSeq Acc Id: XM_063267785   ⟹   XP_063123855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,692,998 (-)NCBI
RefSeq Acc Id: XM_063267786   ⟹   XP_063123856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,193,657 - 32,226,598 (-)NCBI
RefSeq Acc Id: XR_005488975
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
mRatBN7.2924,786,041 - 25,195,993 (-)NCBI
RefSeq Acc Id: XR_005488976
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
mRatBN7.2924,786,041 - 25,195,993 (-)NCBI
RefSeq Acc Id: XR_010054636
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
RefSeq Acc Id: XR_010054637
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
RefSeq Acc Id: XR_010054638
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
RefSeq Acc Id: XR_010054639
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8932,282,439 - 32,692,998 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385524 (Get FASTA)   NCBI Sequence Viewer  
  NP_439894 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452146 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452156 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452159 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452160 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452161 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452162 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452167 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452168 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940196 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940214 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940221 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940222 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123849 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123851 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123852 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123853 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123855 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123856 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB66703 (Get FASTA)   NCBI Sequence Viewer  
  AAF81655 (Get FASTA)   NCBI Sequence Viewer  
  EDM18632 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015454.7
  ENSRNOP00000068599.2
  ENSRNOP00000074013.2
  ENSRNOP00000075220.2
  ENSRNOP00000075545.2
  ENSRNOP00000085276.1
  ENSRNOP00000086155.1
  ENSRNOP00000095741.1
GenBank Protein Q9JIR4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_439894   ⟸   NM_052829
- Peptide Label: isoform 2
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452160   ⟸   XM_017596671
- Peptide Label: isoform X24
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452168   ⟸   XM_017596679
- Peptide Label: isoform X42
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452161   ⟸   XM_017596672
- Peptide Label: isoform X30
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452162   ⟸   XM_017596673
- Peptide Label: isoform X31
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452146   ⟸   XM_017596657
- Peptide Label: isoform X1
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017452167   ⟸   XM_017596678
- Peptide Label: isoform X8
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452159   ⟸   XM_017596670
- Peptide Label: isoform X23
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452156   ⟸   XM_017596667
- Peptide Label: isoform X17
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075220   ⟸   ENSRNOT00000079684
Ensembl Acc Id: ENSRNOP00000075545   ⟸   ENSRNOT00000083915
Ensembl Acc Id: ENSRNOP00000074013   ⟸   ENSRNOT00000086967
Ensembl Acc Id: ENSRNOP00000068599   ⟸   ENSRNOT00000091865
Ensembl Acc Id: ENSRNOP00000015454   ⟸   ENSRNOT00000015453
RefSeq Acc Id: XP_038940218   ⟸   XM_039084290
- Peptide Label: isoform X36
- UniProtKB: A6JJA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940220   ⟸   XM_039084292
- Peptide Label: isoform X38
- UniProtKB: A6JJA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940219   ⟸   XM_039084291
- Peptide Label: isoform X37
- UniProtKB: A6JJA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940221   ⟸   XM_039084293
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038940196   ⟸   XM_039084268
- Peptide Label: isoform X10
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940222   ⟸   XM_039084294
- Peptide Label: isoform X41
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940193   ⟸   XM_039084265
- Peptide Label: isoform X7
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940191   ⟸   XM_039084263
- Peptide Label: isoform X5
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940189   ⟸   XM_039084261
- Peptide Label: isoform X4
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940187   ⟸   XM_039084259
- Peptide Label: isoform X2
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940192   ⟸   XM_039084264
- Peptide Label: isoform X6
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940215   ⟸   XM_039084287
- Peptide Label: isoform X34
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940207   ⟸   XM_039084279
- Peptide Label: isoform X25
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940203   ⟸   XM_039084275
- Peptide Label: isoform X16
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940213   ⟸   XM_039084285
- Peptide Label: isoform X32
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940205   ⟸   XM_039084277
- Peptide Label: isoform X20
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940199   ⟸   XM_039084271
- Peptide Label: isoform X13
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940214   ⟸   XM_039084286
- Peptide Label: isoform X33
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940206   ⟸   XM_039084278
- Peptide Label: isoform X21
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940204   ⟸   XM_039084276
- Peptide Label: isoform X18
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940202   ⟸   XM_039084274
- Peptide Label: isoform X15
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940210   ⟸   XM_039084282
- Peptide Label: isoform X27
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940201   ⟸   XM_039084273
- Peptide Label: isoform X14
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940211   ⟸   XM_039084283
- Peptide Label: isoform X28
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940198   ⟸   XM_039084270
- Peptide Label: isoform X12
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940197   ⟸   XM_039084269
- Peptide Label: isoform X11
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940188   ⟸   XM_039084260
- Peptide Label: isoform X3
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038940216   ⟸   XM_039084288
- Peptide Label: isoform X35
Ensembl Acc Id: ENSRNOP00000085276   ⟸   ENSRNOT00000109109
Ensembl Acc Id: ENSRNOP00000086155   ⟸   ENSRNOT00000099201
Ensembl Acc Id: ENSRNOP00000095741   ⟸   ENSRNOT00000110625
RefSeq Acc Id: NP_001385524   ⟸   NM_001398595
- Peptide Label: isoform 1
- UniProtKB: Q9JIR4 (UniProtKB/Swiss-Prot),   O35168 (UniProtKB/Swiss-Prot),   A0A0G2JT77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123849   ⟸   XM_063267779
- Peptide Label: isoform X9
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123851   ⟸   XM_063267781
- Peptide Label: isoform X19
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123852   ⟸   XM_063267782
- Peptide Label: isoform X22
- UniProtKB: A0A8I6GLS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123855   ⟸   XM_063267785
- Peptide Label: isoform X29
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123853   ⟸   XM_063267783
- Peptide Label: isoform X26
- UniProtKB: F1LYS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123856   ⟸   XM_063267786
- Peptide Label: isoform X40
Protein Domains
C2   FYVE-type   PDZ   RabBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JIR4-F1-model_v2 AlphaFold Q9JIR4 1-1615 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620000 AgrOrtholog
BIND 128229
  128230
  130538
  130594
BioCyc Gene G2FUF-27992 BioCyc
Ensembl Genes ENSRNOG00000011000 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015453.7 UniProtKB/TrEMBL
  ENSRNOT00000079684.2 UniProtKB/TrEMBL
  ENSRNOT00000083915.2 UniProtKB/TrEMBL
  ENSRNOT00000086967.2 UniProtKB/TrEMBL
  ENSRNOT00000091865.2 UniProtKB/TrEMBL
  ENSRNOT00000099201.1 UniProtKB/TrEMBL
  ENSRNOT00000109109.1 UniProtKB/TrEMBL
  ENSRNOT00000110625.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_BD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rim-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:84556 UniProtKB/Swiss-Prot
NCBI Gene 84556 ENTREZGENE
PANTHER PTHR12157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rims1 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011000 RatGTEx
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JT77 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K708_RAT UniProtKB/TrEMBL
  A0A0G2KA18_RAT UniProtKB/TrEMBL
  A0A0G2KAV8_RAT UniProtKB/TrEMBL
  A0A8I6A2Z5_RAT UniProtKB/TrEMBL
  A0A8I6GEN0_RAT UniProtKB/TrEMBL
  A0A8I6GLS3 ENTREZGENE, UniProtKB/TrEMBL
  A6JJA0 ENTREZGENE, UniProtKB/TrEMBL
  F1LYS1 ENTREZGENE, UniProtKB/TrEMBL
  O35168 ENTREZGENE
  Q9JIR4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35168 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Rims1  regulating synaptic membrane exocytosis 1      Symbol updated 1299863 APPROVED
2004-09-10 RIMS1  regulating synaptic membrane exocytosis 1  Rim1  Rim1 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Rim1  Rim1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL