Rims1 (regulating synaptic membrane exocytosis 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rims1 (regulating synaptic membrane exocytosis 1) Rattus norvegicus
Analyze
Symbol: Rims1
Name: regulating synaptic membrane exocytosis 1
RGD ID: 620000
Description: Exhibits SH3 domain binding activity; protein kinase binding activity; and small GTPase binding activity. Involved in long-term synaptic potentiation; positive regulation of inhibitory postsynaptic potential; and positive regulation of synaptic vesicle priming. Localizes to glutamatergic synapse; presynaptic active zone cytoplasmic component; and presynaptic membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 7. Orthologous to human RIMS1 (regulating synaptic membrane exocytosis 1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: rab-3-interacting molecule 1; Rab3 effector; rab3-interacting molecule 1; regulating synaptic membrane exocytosis protein 1; RIM 1; Rim1; RIM1a; Rim1b protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2924,696,959 - 25,196,368 (-)NCBI
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0928,440,408 - 28,973,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0927,284,845 - 27,813,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4921,089,088 - 21,594,679 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1921,090,501 - 21,596,093 (-)NCBI
Celera922,268,968 - 22,762,652 (-)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
1. Betz A, etal., Neuron 2001 Apr;30(1):183-96.
2. Coppola T, etal., J Biol Chem 2001 Aug 31;276(35):32756-62.
3. Deng L, etal., Neuron. 2011 Jan 27;69(2):317-31. doi: 10.1016/j.neuron.2011.01.005.
4. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Inoue E, etal., Neuron. 2006 Apr 20;50(2):261-75.
6. Kaeser PS, etal., Cell. 2011 Jan 21;144(2):282-95. doi: 10.1016/j.cell.2010.12.029.
7. Kaeser PS, etal., Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14680-5. doi: 10.1073/pnas.0806679105. Epub 2008 Sep 17.
8. Lu J, etal., J Mol Biol. 2005 Sep 16;352(2):455-66.
9. NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. Ohtsuka T, etal., J Cell Biol 2002 Aug 5;158(3):577-90. Epub 2002 Aug 5.
11. OMIM Disease Annotation Pipeline
12. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. RGD automated import pipeline for gene-chemical interactions
14. Sakane A, etal., Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):10029-34. Epub 2006 Jun 16.
15. Schoch S, etal., Nature 2002 Jan 17;415(6869):321-6.
16. Simsek-Duran F, etal., Nat Neurosci. 2004 Dec;7(12):1296-8. Epub 2004 Nov 14.
17. Sun L, etal., J Biol Chem 2003 Oct 3;278(40):38301-9. Epub 2003 Jul 18.
18. Tang AH, etal., Nature. 2016 Aug 11;536(7615):210-4. doi: 10.1038/nature19058. Epub 2016 Jul 27.
19. Wang Y, etal., J Biol Chem 2000 Jun 30;275(26):20033-44.
20. Wang Y, etal., Nature 1997 Aug 7;388(6642):593-8.
21. Wang Y, etal., Proc Natl Acad Sci U S A 2002 Oct 29;99(22):14464-9.
22. Yang Y and Calakos N, J Neurosci. 2011 Aug 17;31(33):12053-7.
Additional References at PubMed
PMID:11797010   PMID:14734538   PMID:16704978   PMID:17114649   PMID:17124501   PMID:17630786   PMID:19036990   PMID:19812333   PMID:20130189   PMID:20452978   PMID:21144999   PMID:21712437  
PMID:22248876   PMID:22658674   PMID:22753485   PMID:23751498   PMID:23999003   PMID:24290762   PMID:25730884   PMID:27537483   PMID:29476059   PMID:30661983  


Genomics

Comparative Map Data
Rims1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2924,696,959 - 25,196,368 (-)NCBI
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0928,440,408 - 28,973,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0927,284,845 - 27,813,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4921,089,088 - 21,594,679 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1921,090,501 - 21,596,093 (-)NCBI
Celera922,268,968 - 22,762,652 (-)NCBICelera
Cytogenetic Map9q13NCBI
RIMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl671,886,703 - 72,403,143 (+)EnsemblGRCh38hg38GRCh38
GRCh38671,886,550 - 72,403,145 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37672,596,253 - 73,112,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36672,653,371 - 73,169,229 (+)NCBINCBI36hg18NCBI36
Build 34672,653,447 - 73,167,137NCBI
Celera672,990,111 - 73,506,277 (+)NCBI
Cytogenetic Map6q13NCBI
HuRef669,794,715 - 70,311,090 (+)NCBIHuRef
CHM1_1672,762,989 - 73,279,548 (+)NCBICHM1_1
Rims1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39122,356,196 - 22,845,239 (-)NCBIGRCm39mm39
GRCm39 Ensembl122,356,475 - 22,845,203 (-)Ensembl
GRCm38122,285,972 - 22,806,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl122,286,251 - 22,805,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv37122,278,503 - 22,422,924 (-)NCBIGRCm37mm9NCBIm37
MGSCv37122,475,024 - 22,812,563 (-)NCBIGRCm37mm9NCBIm37
MGSCv36122,271,058 - 22,414,692 (-)NCBImm8
Celera122,160,697 - 22,651,999 (-)NCBICelera
Cytogenetic Map1A5NCBI
Rims1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554886,936,952 - 7,197,022 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554886,999,128 - 7,196,583 (+)NCBIChiLan1.0ChiLan1.0
RIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1673,304,152 - 73,523,422 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl673,008,176 - 73,523,422 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0669,714,807 - 70,231,260 (+)NCBIMhudiblu_PPA_v0panPan3
RIMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11234,473,974 - 34,661,893 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1234,474,033 - 34,659,410 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1234,042,997 - 34,520,866 (+)NCBI
ROS_Cfam_1.01234,724,669 - 35,202,130 (+)NCBI
UMICH_Zoey_3.11234,260,108 - 34,737,956 (+)NCBI
UNSW_CanFamBas_1.01234,298,396 - 34,775,746 (+)NCBI
UU_Cfam_GSD_1.01234,408,939 - 34,886,369 (+)NCBI
Rims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494669,448,844 - 69,892,776 (+)NCBI
SpeTri2.0NW_0049366183,678,400 - 4,047,994 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl151,785,495 - 52,244,934 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1151,785,140 - 52,246,456 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2158,399,458 - 58,584,713 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIMS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1172,690,430 - 3,176,794 (-)NCBI
ChlSab1.1 Ensembl172,690,418 - 3,176,738 (-)Ensembl
Vero_WHO_p1.0NW_0236660588,621,932 - 9,124,698 (-)NCBI

Position Markers
D9Wox34  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,699,061 - 24,699,239 (+)MAPPER
Rnor_6.0928,442,437 - 28,442,614NCBIRnor6.0
Rnor_5.0927,285,048 - 27,285,225UniSTSRnor5.0
RGSC_v3.4921,089,291 - 21,089,468UniSTSRGSC3.4
Celera922,269,171 - 22,269,348UniSTS
Cytogenetic Map9q13UniSTS
BF386262  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,957,367 - 24,957,546 (+)MAPPER
Rnor_6.0928,702,118 - 28,702,296NCBIRnor6.0
Rnor_5.0927,543,274 - 27,543,452UniSTSRnor5.0
RGSC_v3.4921,354,754 - 21,354,932UniSTSRGSC3.4
Celera922,525,873 - 22,526,051UniSTS
RH 3.4 Map9231.6UniSTS
Cytogenetic Map9q13UniSTS
BE101604  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,191,173 - 25,191,381 (+)MAPPER
Rnor_6.0928,998,237 - 28,998,444NCBIRnor6.0
Rnor_6.0928,968,055 - 28,968,262NCBIRnor6.0
Rnor_5.0927,838,292 - 27,838,499UniSTSRnor5.0
Rnor_5.0927,808,328 - 27,808,535UniSTSRnor5.0
RGSC_v3.4921,589,509 - 21,589,716UniSTSRGSC3.4
Celera922,757,516 - 22,757,723UniSTS
RH 3.4 Map9233.2UniSTS
Cytogenetic Map9q13UniSTS
BF400263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,104,426 - 25,104,643 (+)MAPPER
Rnor_6.0928,849,449 - 28,849,665NCBIRnor6.0
Rnor_5.0927,690,840 - 27,691,056UniSTSRnor5.0
RGSC_v3.4921,502,187 - 21,502,403UniSTSRGSC3.4
Celera922,671,338 - 22,671,554UniSTS
RH 3.4 Map9231.9UniSTS
Cytogenetic Map9q13UniSTS
BF401631  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,143,220 - 25,143,314 (+)MAPPER
Rnor_6.0928,920,096 - 28,920,189NCBIRnor6.0
Rnor_6.0928,890,184 - 28,890,277NCBIRnor6.0
Rnor_5.0927,760,784 - 27,760,877UniSTSRnor5.0
Rnor_5.0927,730,872 - 27,730,965UniSTSRnor5.0
RGSC_v3.4921,541,202 - 21,541,295UniSTSRGSC3.4
Celera922,709,517 - 22,709,610UniSTS
RH 3.4 Map9219.69UniSTS
Cytogenetic Map9q13UniSTS
BE113512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,191,827 - 25,191,996 (+)MAPPER
Rnor_6.0928,998,891 - 28,999,059NCBIRnor6.0
Rnor_6.0928,968,709 - 28,968,877NCBIRnor6.0
Rnor_5.0927,838,946 - 27,839,114UniSTSRnor5.0
Rnor_5.0927,808,982 - 27,809,150UniSTSRnor5.0
RGSC_v3.4921,590,163 - 21,590,331UniSTSRGSC3.4
Celera922,758,170 - 22,758,338UniSTS
RH 3.4 Map9236.0UniSTS
Cytogenetic Map9q13UniSTS
BF405023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,983,145 - 24,983,237 (+)MAPPER
Rnor_6.0928,727,891 - 28,727,982NCBIRnor6.0
Rnor_5.0927,568,933 - 27,569,024UniSTSRnor5.0
RGSC_v3.4921,380,414 - 21,380,505UniSTSRGSC3.4
Celera922,550,926 - 22,551,017UniSTS
RH 3.4 Map9235.6UniSTS
Cytogenetic Map9q13UniSTS
AU048318  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,795,319 - 24,795,543 (+)MAPPER
Rnor_6.0928,538,872 - 28,539,095NCBIRnor6.0
Rnor_5.0927,380,940 - 27,381,163UniSTSRnor5.0
RGSC_v3.4921,185,587 - 21,185,810UniSTSRGSC3.4
Celera922,365,008 - 22,365,231UniSTS
Cytogenetic Map9q13UniSTS
RH138351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2924,986,370 - 24,986,490 (+)MAPPER
Rnor_6.0928,731,116 - 28,731,235NCBIRnor6.0
Rnor_5.0927,572,158 - 27,572,277UniSTSRnor5.0
RGSC_v3.4921,383,639 - 21,383,758UniSTSRGSC3.4
Celera922,554,151 - 22,554,270UniSTS
RH 3.4 Map9236.0UniSTS
Cytogenetic Map9q13UniSTS
BF390485  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,104,327 - 25,104,541 (+)MAPPER
Rnor_6.0928,849,350 - 28,849,563NCBIRnor6.0
Rnor_5.0927,690,741 - 27,690,954UniSTSRnor5.0
RGSC_v3.4921,502,088 - 21,502,301UniSTSRGSC3.4
Celera922,671,239 - 22,671,452UniSTS
RH 3.4 Map9236.6UniSTS
Cytogenetic Map9q13UniSTS
AI406393  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,173,784 - 25,173,974 (+)MAPPER
Rnor_6.0928,980,852 - 28,981,041NCBIRnor6.0
Rnor_6.0928,950,668 - 28,950,857NCBIRnor6.0
Rnor_5.0927,820,907 - 27,821,096UniSTSRnor5.0
Rnor_5.0927,790,941 - 27,791,130UniSTSRnor5.0
RGSC_v3.4921,572,122 - 21,572,311UniSTSRGSC3.4
Celera922,740,140 - 22,740,329UniSTS
RH 3.4 Map9232.1UniSTS
Cytogenetic Map9q13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9129467098Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9140383872Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9140383872Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9140383872Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9145029794Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9105522293442944Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9235572247355722Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9235572247355722Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9288097747375681Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9288097747880977Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9498609549986095Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9498609549986095Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)91221677157216771Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)91242546357425463Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)91242546357425463Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91555490147249201Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91952048945029794Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92488509969885099Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92569234292741406Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92569237370692373Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92575432054885226Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92748603663264281Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92748603666757620Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92748615588333183Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:64
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000015453
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 58 1
Low 3 23 12 4 4 16 16 38 2
Below cutoff 19 10 7 11 7 6 6 8 2 8 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_052829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF007836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF199333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000015453   ⟹   ENSRNOP00000015454
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079684   ⟹   ENSRNOP00000075220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl928,442,813 - 28,972,835 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083915   ⟹   ENSRNOP00000075545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl928,442,810 - 28,732,919 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086967   ⟹   ENSRNOP00000074013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl928,442,813 - 28,972,835 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091865   ⟹   ENSRNOP00000068599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl928,442,229 - 28,973,246 (-)Ensembl
RefSeq Acc Id: NM_052829   ⟹   NP_439894
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,698,859 - 25,196,368 (-)NCBI
Rnor_6.0928,442,234 - 28,973,246 (-)NCBI
Rnor_5.0927,284,845 - 27,813,498 (-)NCBI
RGSC_v3.4921,089,088 - 21,594,679 (-)RGD
Celera922,268,968 - 22,762,652 (-)RGD
Sequence:
RefSeq Acc Id: XM_008766936   ⟹   XP_008765158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,196,363 (-)NCBI
Rnor_6.0928,440,408 - 28,973,227 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596655   ⟹   XP_017452144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,150 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596656   ⟹   XP_017452145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596657   ⟹   XP_017452146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596658   ⟹   XP_017452147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596659   ⟹   XP_017452148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596660   ⟹   XP_017452149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596661   ⟹   XP_017452150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596662   ⟹   XP_017452151
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596663   ⟹   XP_017452152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,144 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596664   ⟹   XP_017452153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596665   ⟹   XP_017452154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,143 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596666   ⟹   XP_017452155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596667   ⟹   XP_017452156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596668   ⟹   XP_017452157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596669   ⟹   XP_017452158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,973,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596670   ⟹   XP_017452159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596671   ⟹   XP_017452160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,193 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596672   ⟹   XP_017452161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,149 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596673   ⟹   XP_017452162
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596674   ⟹   XP_017452163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,636,676 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596675   ⟹   XP_017452164
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,629,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596676   ⟹   XP_017452165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,630,948 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596677   ⟹   XP_017452166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0928,440,408 - 28,473,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596678   ⟹   XP_017452167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,145 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596679   ⟹   XP_017452168
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
Rnor_6.0928,440,408 - 28,973,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084259   ⟹   XP_038940187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084260   ⟹   XP_038940188
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084261   ⟹   XP_038940189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084263   ⟹   XP_038940191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084264   ⟹   XP_038940192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084265   ⟹   XP_038940193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084267   ⟹   XP_038940195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084268   ⟹   XP_038940196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084269   ⟹   XP_038940197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084270   ⟹   XP_038940198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084271   ⟹   XP_038940199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084273   ⟹   XP_038940201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084274   ⟹   XP_038940202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084275   ⟹   XP_038940203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084276   ⟹   XP_038940204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084277   ⟹   XP_038940205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084278   ⟹   XP_038940206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084279   ⟹   XP_038940207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084281   ⟹   XP_038940209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,696,959 - 25,021,628 (-)NCBI
RefSeq Acc Id: XM_039084282   ⟹   XP_038940210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084283   ⟹   XP_038940211
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084284   ⟹   XP_038940212
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,781,017 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084285   ⟹   XP_038940213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084286   ⟹   XP_038940214
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084287   ⟹   XP_038940215
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084288   ⟹   XP_038940216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,788,289 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084289   ⟹   XP_038940217
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,803,733 - 25,195,993 (-)NCBI
RefSeq Acc Id: XM_039084290   ⟹   XP_038940218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,696,959 - 24,893,416 (-)NCBI
RefSeq Acc Id: XM_039084291   ⟹   XP_038940219
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,696,959 - 24,886,020 (-)NCBI
RefSeq Acc Id: XM_039084292   ⟹   XP_038940220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,696,959 - 24,886,913 (-)NCBI
RefSeq Acc Id: XM_039084293   ⟹   XP_038940221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,696,959 - 24,803,715 (-)NCBI
RefSeq Acc Id: XM_039084294   ⟹   XP_038940222
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,697,025 - 25,195,993 (-)NCBI
RefSeq Acc Id: XR_005488975
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,786,041 - 25,195,993 (-)NCBI
RefSeq Acc Id: XR_005488976
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2924,786,041 - 25,195,993 (-)NCBI
Protein Sequences
Protein RefSeqs NP_439894 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765158 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452146 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452156 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452159 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452160 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452161 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452162 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452167 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452168 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940195 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940196 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940197 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940198 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940199 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940202 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940210 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940211 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940212 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940213 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940214 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940215 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940216 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940217 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940221 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB66703 (Get FASTA)   NCBI Sequence Viewer  
  AAF81655 (Get FASTA)   NCBI Sequence Viewer  
  EDM18632 (Get FASTA)   NCBI Sequence Viewer  
  Q9JIR4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_439894   ⟸   NM_052829
- Sequence:
RefSeq Acc Id: XP_008765158   ⟸   XM_008766936
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017452160   ⟸   XM_017596671
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017452168   ⟸   XM_017596679
- Peptide Label: isoform X41
- Sequence:
RefSeq Acc Id: XP_017452144   ⟸   XM_017596655
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452148   ⟸   XM_017596659
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017452147   ⟸   XM_017596658
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017452145   ⟸   XM_017596656
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017452161   ⟸   XM_017596672
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_017452149   ⟸   XM_017596660
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017452150   ⟸   XM_017596661
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017452162   ⟸   XM_017596673
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_017452146   ⟸   XM_017596657
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017452151   ⟸   XM_017596662
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017452167   ⟸   XM_017596678
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017452152   ⟸   XM_017596663
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017452154   ⟸   XM_017596665
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017452153   ⟸   XM_017596664
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017452158   ⟸   XM_017596669
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017452155   ⟸   XM_017596666
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017452157   ⟸   XM_017596668
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_017452159   ⟸   XM_017596670
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017452156   ⟸   XM_017596667
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017452163   ⟸   XM_017596674
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_017452165   ⟸   XM_017596676
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017452164   ⟸   XM_017596675
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_017452166   ⟸   XM_017596677
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: ENSRNOP00000075220   ⟸   ENSRNOT00000079684
RefSeq Acc Id: ENSRNOP00000075545   ⟸   ENSRNOT00000083915
RefSeq Acc Id: ENSRNOP00000074013   ⟸   ENSRNOT00000086967
RefSeq Acc Id: ENSRNOP00000068599   ⟸   ENSRNOT00000091865
RefSeq Acc Id: ENSRNOP00000015454   ⟸   ENSRNOT00000015453
RefSeq Acc Id: XP_038940209   ⟸   XM_039084281
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038940218   ⟸   XM_039084290
- Peptide Label: isoform X36
RefSeq Acc Id: XP_038940220   ⟸   XM_039084292
- Peptide Label: isoform X38
RefSeq Acc Id: XP_038940219   ⟸   XM_039084291
- Peptide Label: isoform X37
RefSeq Acc Id: XP_038940221   ⟸   XM_039084293
- Peptide Label: isoform X39
RefSeq Acc Id: XP_038940196   ⟸   XM_039084268
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038940222   ⟸   XM_039084294
- Peptide Label: isoform X40
RefSeq Acc Id: XP_038940193   ⟸   XM_039084265
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038940191   ⟸   XM_039084263
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038940189   ⟸   XM_039084261
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038940187   ⟸   XM_039084259
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038940192   ⟸   XM_039084264
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038940215   ⟸   XM_039084287
- Peptide Label: isoform X33
RefSeq Acc Id: XP_038940207   ⟸   XM_039084279
- Peptide Label: isoform X24
RefSeq Acc Id: XP_038940203   ⟸   XM_039084275
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038940213   ⟸   XM_039084285
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038940205   ⟸   XM_039084277
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038940199   ⟸   XM_039084271
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038940214   ⟸   XM_039084286
- Peptide Label: isoform X32
RefSeq Acc Id: XP_038940206   ⟸   XM_039084278
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038940204   ⟸   XM_039084276
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038940195   ⟸   XM_039084267
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038940202   ⟸   XM_039084274
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038940210   ⟸   XM_039084282
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038940201   ⟸   XM_039084273
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038940211   ⟸   XM_039084283
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038940198   ⟸   XM_039084270
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038940197   ⟸   XM_039084269
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038940188   ⟸   XM_039084260
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038940212   ⟸   XM_039084284
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038940216   ⟸   XM_039084288
- Peptide Label: isoform X34
RefSeq Acc Id: XP_038940217   ⟸   XM_039084289
- Peptide Label: isoform X35
Protein Domains
C2   FYVE-type   PDZ   RabBD

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620000 AgrOrtholog
BIND 128229
  128230
  130538
  130594
Ensembl Genes ENSRNOG00000011000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000015454 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068599 UniProtKB/TrEMBL
  ENSRNOP00000074013 UniProtKB/TrEMBL
  ENSRNOP00000075220 UniProtKB/TrEMBL
  ENSRNOP00000075545 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015453 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000079684 UniProtKB/TrEMBL
  ENSRNOT00000083915 UniProtKB/TrEMBL
  ENSRNOT00000086967 UniProtKB/TrEMBL
  ENSRNOT00000091865 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab_BD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rim-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:84556 UniProtKB/Swiss-Prot
NCBI Gene 84556 ENTREZGENE
PANTHER PTHR12157 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rims1 PhenoGen
PROSITE PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RABBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00239 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JT77_RAT UniProtKB/TrEMBL
  A0A0G2K708_RAT UniProtKB/TrEMBL
  A0A0G2KA18_RAT UniProtKB/TrEMBL
  A0A0G2KAV8_RAT UniProtKB/TrEMBL
  F1LYS1_RAT UniProtKB/TrEMBL
  Q9JIR4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35168 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Rims1  regulating synaptic membrane exocytosis 1      Symbol updated 1299863 APPROVED
2004-09-10 RIMS1  regulating synaptic membrane exocytosis 1  Rim1  Rim1 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Rim1  Rim1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL