Rab22a (RAB22A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab22a (RAB22A, member RAS oncogene family) Rattus norvegicus
Analyze
Symbol: Rab22a
Name: RAB22A, member RAS oncogene family
RGD ID: 1311959
Description: Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in several processes, including endosome organization; intracellular protein transport; and regulation of vesicle size. Predicted to be located in actin cytoskeleton; phagocytic vesicle; and plasma membrane. Predicted to be active in early endosome. Orthologous to human RAB22A (RAB22A, member RAS oncogene family); PARTICIPATES IN endocytosis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC366265; ras-related protein Rab-22A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23162,459,542 - 162,506,137 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3162,459,726 - 162,506,137 (+)Ensembl
Rnor_6.03171,743,884 - 171,790,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3171,743,929 - 171,790,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03177,802,611 - 177,849,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43164,556,619 - 164,603,742 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13164,462,654 - 164,500,898 (+)NCBI
Celera3161,643,762 - 161,690,130 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11870209   PMID:12477932   PMID:16034420   PMID:19056867   PMID:19199708   PMID:20937701   PMID:21255211   PMID:21419809   PMID:23376485   PMID:24466322  


Genomics

Comparative Map Data
Rab22a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23162,459,542 - 162,506,137 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3162,459,726 - 162,506,137 (+)Ensembl
Rnor_6.03171,743,884 - 171,790,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3171,743,929 - 171,790,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03177,802,611 - 177,849,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43164,556,619 - 164,603,742 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13164,462,654 - 164,500,898 (+)NCBI
Celera3161,643,762 - 161,690,130 (+)NCBICelera
Cytogenetic Map3q42NCBI
RAB22A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382058,309,715 - 58,367,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2058,309,715 - 58,367,507 (+)EnsemblGRCh38hg38GRCh38
GRCh372056,884,771 - 56,942,563 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362056,318,177 - 56,375,969 (+)NCBINCBI36hg18NCBI36
Build 342056,318,176 - 56,375,968NCBI
Celera2053,625,236 - 53,683,029 (+)NCBI
Cytogenetic Map20q13.32NCBI
HuRef2053,667,419 - 53,725,442 (+)NCBIHuRef
CHM1_12056,786,311 - 56,844,104 (+)NCBICHM1_1
T2T-CHM13v2.02060,090,659 - 60,148,468 (+)NCBI
Rab22a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,501,638 - 173,543,975 (+)NCBIGRCm39mm39
GRCm39 Ensembl2173,501,553 - 173,549,136 (+)Ensembl
GRCm382173,659,836 - 173,702,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2173,659,760 - 173,707,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv372173,485,346 - 173,527,683 (+)NCBIGRCm37mm9NCBIm37
MGSCv362173,302,800 - 173,347,611 (+)NCBImm8
Celera2179,627,701 - 179,670,031 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.26NCBI
Rab22a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554451,174,817 - 1,225,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554451,167,941 - 1,224,932 (-)NCBIChiLan1.0ChiLan1.0
RAB22A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12055,929,798 - 55,982,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2055,929,801 - 55,983,009 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02054,655,014 - 54,714,349 (+)NCBIMhudiblu_PPA_v0panPan3
RAB22A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,109,489 - 43,157,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,108,918 - 43,157,932 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2442,355,057 - 42,404,621 (+)NCBI
ROS_Cfam_1.02443,974,055 - 44,023,796 (+)NCBI
ROS_Cfam_1.0 Ensembl2443,973,367 - 44,024,744 (+)Ensembl
UMICH_Zoey_3.12443,076,468 - 43,125,967 (+)NCBI
UNSW_CanFamBas_1.02443,197,302 - 43,246,562 (+)NCBI
UU_Cfam_GSD_1.02443,855,771 - 43,905,501 (+)NCBI
Rab22a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640182,342,731 - 182,399,438 (-)NCBI
SpeTri2.0NW_004936530907,359 - 963,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB22A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1758,514,985 - 58,572,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11758,514,985 - 58,572,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21765,726,340 - 65,783,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB22A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,761,037 - 5,820,531 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl25,768,840 - 5,820,492 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605053,815,302 - 53,874,745 (-)NCBIVero_WHO_p1.0
Rab22a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474124,636,248 - 24,690,753 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474124,637,061 - 24,696,305 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D3Mco70  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.03177,810,387 - 177,810,613NCBIRnor5.0
Rnor_5.03177,810,491 - 177,810,613NCBIRnor5.0
RGSC_v3.43164,564,233 - 164,564,354UniSTSRGSC3.4
RGSC_v3.43164,564,129 - 164,564,354UniSTSRGSC3.4
Celera3161,651,272 - 161,651,497UniSTS
Celera3161,651,376 - 161,651,497UniSTS
Cytogenetic Map3q42UniSTS
AW319644  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23162,500,737 - 162,500,883 (+)MAPPERmRatBN7.2
Rnor_6.03171,785,159 - 171,785,304NCBIRnor6.0
Rnor_5.03177,843,869 - 177,844,014UniSTSRnor5.0
RGSC_v3.43164,598,343 - 164,598,488UniSTSRGSC3.4
Celera3161,684,731 - 161,684,876UniSTS
Cytogenetic Map3q42UniSTS
AI662177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23162,505,970 - 162,506,070 (+)MAPPERmRatBN7.2
Rnor_6.03171,790,392 - 171,790,491NCBIRnor6.0
Rnor_5.03177,849,102 - 177,849,201UniSTSRnor5.0
RGSC_v3.43164,603,576 - 164,603,675UniSTSRGSC3.4
Celera3161,689,964 - 161,690,063UniSTS
Cytogenetic Map3q42UniSTS
RH130380  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23162,505,856 - 162,506,036 (+)MAPPERmRatBN7.2
Rnor_6.03171,790,278 - 171,790,457NCBIRnor6.0
Rnor_5.03177,848,988 - 177,849,167UniSTSRnor5.0
RGSC_v3.43164,603,462 - 164,603,641UniSTSRGSC3.4
Celera3161,689,850 - 161,690,029UniSTS
RH 3.4 Map31498.6UniSTS
Cytogenetic Map3q42UniSTS
RH137591  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23162,496,957 - 162,497,167 (+)MAPPERmRatBN7.2
Rnor_6.03171,781,379 - 171,781,588NCBIRnor6.0
Rnor_5.03177,840,089 - 177,840,298UniSTSRnor5.0
RGSC_v3.43164,594,563 - 164,594,772UniSTSRGSC3.4
Celera3161,680,951 - 161,681,160UniSTS
Cytogenetic Map3q42UniSTS
UniSTS:234620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23162,499,964 - 162,500,074 (+)MAPPERmRatBN7.2
Rnor_6.03171,784,386 - 171,784,495NCBIRnor6.0
Rnor_5.03177,843,096 - 177,843,205UniSTSRnor5.0
RGSC_v3.43164,597,570 - 164,597,679UniSTSRGSC3.4
Celera3161,683,958 - 161,684,067UniSTS
Cytogenetic Map3q42UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:384
Count of miRNA genes:224
Interacting mature miRNAs:249
Transcripts:ENSRNOT00000064400
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 4 4 2 4 1 64 21 36 3
Low 19 53 37 17 37 8 10 10 14 5 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064400   ⟹   ENSRNOP00000061148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3162,459,728 - 162,500,639 (+)Ensembl
Rnor_6.0 Ensembl3171,743,950 - 171,785,258 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079113   ⟹   ENSRNOP00000072834
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3162,459,747 - 162,506,137 (+)Ensembl
Rnor_6.0 Ensembl3171,743,929 - 171,790,558 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098024   ⟹   ENSRNOP00000087167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3162,460,686 - 162,506,137 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101727   ⟹   ENSRNOP00000091594
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3162,459,726 - 162,498,025 (+)Ensembl
RefSeq Acc Id: NM_001108966   ⟹   NP_001102436
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23162,459,747 - 162,506,137 (+)NCBI
Rnor_6.03171,743,929 - 171,790,558 (+)NCBI
Rnor_5.03177,802,611 - 177,849,268 (+)NCBI
RGSC_v3.43164,556,619 - 164,603,742 (+)RGD
Celera3161,643,762 - 161,690,130 (+)RGD
Sequence:
RefSeq Acc Id: XM_006235705   ⟹   XP_006235767
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23162,459,542 - 162,506,129 (+)NCBI
Rnor_6.03171,743,894 - 171,790,550 (+)NCBI
Rnor_5.03177,802,611 - 177,849,268 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001102436   ⟸   NM_001108966
- Sequence:
RefSeq Acc Id: XP_006235767   ⟸   XM_006235705
- Peptide Label: isoform X1
- UniProtKB: B0BN19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072834   ⟸   ENSRNOT00000079113
RefSeq Acc Id: ENSRNOP00000061148   ⟸   ENSRNOT00000064400
RefSeq Acc Id: ENSRNOP00000087167   ⟸   ENSRNOT00000098024
RefSeq Acc Id: ENSRNOP00000091594   ⟸   ENSRNOT00000101727

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BN19-F1-model_v2 AlphaFold B0BN19 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692715
Promoter ID:EPDNEW_R3240
Type:multiple initiation site
Name:Rab22a_1
Description:RAB22A, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03171,743,909 - 171,743,969EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311959 AgrOrtholog
BioCyc Gene G2FUF-46486 BioCyc
Ensembl Genes ENSRNOG00000005762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061148 ENTREZGENE
  ENSRNOP00000061148.2 UniProtKB/TrEMBL
  ENSRNOP00000072834.1 UniProtKB/TrEMBL
  ENSRNOP00000087167.1 UniProtKB/TrEMBL
  ENSRNOP00000091594.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064400 ENTREZGENE
  ENSRNOT00000064400.3 UniProtKB/TrEMBL
  ENSRNOT00000079113.2 UniProtKB/TrEMBL
  ENSRNOT00000098024.1 UniProtKB/TrEMBL
  ENSRNOT00000101727.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367507 IMAGE-MGC_LOAD
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Ras_GTPase UniProtKB/TrEMBL
  Small_GTP-bd UniProtKB/TrEMBL
KEGG Report rno:366265 UniProtKB/TrEMBL
MGC_CLONE MGC:187628 IMAGE-MGC_LOAD
NCBI Gene 366265 ENTREZGENE
Pfam Ras UniProtKB/TrEMBL
PhenoGen Rab22a PhenoGen
PROSITE RAS UniProtKB/TrEMBL
SMART RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A0A0G2K3Z3_RAT UniProtKB/TrEMBL
  A0A8I6A2Q8_RAT UniProtKB/TrEMBL
  A0A8I6AES5_RAT UniProtKB/TrEMBL
  B0BN19 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4A9H0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rab22a  RAB22A, member RAS oncogene family   Rab22a_predicted  RAB22A, member RAS oncogene family (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rab22a_predicted  RAB22A, member RAS oncogene family (predicted)      Symbol and Name status set to approved 70820 APPROVED