Ap1g1 (adaptor related protein complex 1 subunit gamma 1) - Rat Genome Database

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Gene: Ap1g1 (adaptor related protein complex 1 subunit gamma 1) Rattus norvegicus
Analyze
Symbol: Ap1g1
Name: adaptor related protein complex 1 subunit gamma 1
RGD ID: 619785
Description: Enables collagen binding activity and protein C-terminus binding activity. Involved in microtubule cytoskeleton organization. Located in cytosol and microtubule cytoskeleton. Orthologous to human AP1G1 (adaptor related protein complex 1 subunit gamma 1); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adaptor protein complex AP-1 gamma 1 subunit; adaptor protein complex AP-1, gamma 1 subunit; adaptor-related protein complex 1, gamma 1 subunit; AP-1 complex subunit gamma-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21937,744,666 - 37,831,131 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1937,744,633 - 37,829,167 (+)Ensembl
Rnor_6.01941,805,252 - 41,860,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01952,628,652 - 52,684,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41939,676,021 - 39,734,854 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11939,730,027 - 39,738,578 (+)NCBI
Celera1937,174,653 - 37,231,881 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:9243506   PMID:9733768   PMID:10444069   PMID:12477932   PMID:12498786   PMID:12536145   PMID:15469932   PMID:16621800   PMID:17341485   PMID:18762162   PMID:19841138   PMID:19946888  
PMID:22511774   PMID:23632890  


Genomics

Comparative Map Data
Ap1g1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21937,744,666 - 37,831,131 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1937,744,633 - 37,829,167 (+)Ensembl
Rnor_6.01941,805,252 - 41,860,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01952,628,652 - 52,684,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41939,676,021 - 39,734,854 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11939,730,027 - 39,738,578 (+)NCBI
Celera1937,174,653 - 37,231,881 (+)NCBICelera
Cytogenetic Map19q12NCBI
AP1G1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381671,729,000 - 71,808,834 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1671,729,000 - 71,809,201 (-)EnsemblGRCh38hg38GRCh38
GRCh371671,762,903 - 71,842,737 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361670,320,404 - 70,400,477 (-)NCBINCBI36hg18NCBI36
Build 341670,320,415 - 70,400,477NCBI
Celera1656,079,081 - 56,139,681 (-)NCBI
Cytogenetic Map16q22.2NCBI
HuRef1657,530,455 - 57,610,654 (-)NCBIHuRef
CHM1_11673,175,717 - 73,255,849 (-)NCBICHM1_1
Ap1g1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398110,505,215 - 110,590,842 (+)NCBIGRCm39mm39
GRCm39 Ensembl8110,505,186 - 110,590,836 (+)Ensembl
GRCm388109,778,583 - 109,864,210 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8109,778,554 - 109,864,204 (+)EnsemblGRCm38mm10GRCm38
MGSCv378112,302,540 - 112,384,835 (+)NCBIGRCm37mm9NCBIm37
MGSCv368112,667,839 - 112,750,487 (+)NCBImm8
Celera8114,004,323 - 114,082,583 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map857.26NCBI
Ap1g1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554844,430,461 - 4,510,497 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554844,430,461 - 4,511,368 (-)NCBIChiLan1.0ChiLan1.0
AP1G1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11671,568,856 - 71,648,744 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1671,568,863 - 71,648,744 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01653,201,859 - 53,282,437 (+)NCBIMhudiblu_PPA_v0panPan3
AP1G1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1577,512,865 - 77,589,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl577,432,517 - 77,565,801 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha577,471,192 - 77,550,461 (-)NCBI
ROS_Cfam_1.0577,949,221 - 78,028,610 (-)NCBI
ROS_Cfam_1.0 Ensembl577,869,730 - 78,028,575 (-)Ensembl
UMICH_Zoey_3.1577,769,242 - 77,848,763 (-)NCBI
UNSW_CanFamBas_1.0577,592,241 - 77,671,470 (-)NCBI
UU_Cfam_GSD_1.0578,091,430 - 78,170,707 (-)NCBI
Ap1g1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934937,525,971 - 37,605,861 (-)NCBI
SpeTri2.0NW_00493647521,983,248 - 22,063,133 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP1G1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl614,719,954 - 14,809,744 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1614,719,949 - 14,809,821 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2614,338,265 - 14,426,133 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AP1G1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1554,850,831 - 54,944,915 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl554,850,694 - 54,944,900 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604717,652,522 - 17,740,544 (-)NCBIVero_WHO_p1.0
Ap1g1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474613,997,903 - 14,081,140 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D19Got31  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21937,756,669 - 37,756,863 (-)MAPPERmRatBN7.2
Rnor_6.01941,874,237 - 41,874,432NCBIRnor6.0
Rnor_5.01952,698,958 - 52,699,153UniSTSRnor5.0
RGSC_v3.41939,662,025 - 39,662,220UniSTSRGSC3.4
RGSC_v3.41939,662,024 - 39,662,220RGDRGSC3.4
RGSC_v3.11939,666,906 - 39,667,101RGD
Celera1937,160,656 - 37,160,851UniSTS
RH 3.4 Map19415.5UniSTS
RH 3.4 Map19415.5RGD
RH 2.0 Map19480.6RGD
Cytogenetic Map19q12UniSTS
RH132798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21937,827,876 - 37,828,072 (-)MAPPERmRatBN7.2
Rnor_6.01941,805,508 - 41,805,703NCBIRnor6.0
Rnor_5.01952,628,908 - 52,629,103UniSTSRnor5.0
RGSC_v3.41939,734,403 - 39,734,598UniSTSRGSC3.4
Celera1937,231,430 - 37,231,625UniSTS
RH 3.4 Map19425.5UniSTS
Cytogenetic Map19q12UniSTS
AI555481  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21937,828,353 - 37,828,561 (-)MAPPERmRatBN7.2
Rnor_6.01941,805,019 - 41,805,226NCBIRnor6.0
Rnor_5.01952,628,419 - 52,628,626UniSTSRnor5.0
RGSC_v3.41939,734,880 - 39,735,087UniSTSRGSC3.4
Celera1937,231,907 - 37,232,114UniSTS
Cytogenetic Map19q12UniSTS
AA957928  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21937,828,295 - 37,828,484 (-)MAPPERmRatBN7.2
Rnor_6.01941,805,096 - 41,805,284NCBIRnor6.0
Rnor_5.01952,628,496 - 52,628,684UniSTSRnor5.0
RGSC_v3.41939,734,822 - 39,735,010UniSTSRGSC3.4
Celera1937,231,849 - 37,232,037UniSTS
RH 3.4 Map19426.1UniSTS
Cytogenetic Map19q12UniSTS
RH124805  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21937,828,036 - 37,828,306 (-)MAPPERmRatBN7.2
Rnor_6.01941,805,274 - 41,805,543NCBIRnor6.0
Rnor_5.01952,628,674 - 52,628,943UniSTSRnor5.0
RGSC_v3.41939,734,563 - 39,734,832UniSTSRGSC3.4
Celera1937,231,590 - 37,231,859UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000099597   ⟹   ENSRNOP00000090346
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1937,744,633 - 37,829,167 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107107   ⟹   ENSRNOP00000097388
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1937,744,633 - 37,829,167 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108684   ⟹   ENSRNOP00000077402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1937,769,719 - 37,829,167 (+)Ensembl
RefSeq Acc Id: NM_134460   ⟹   NP_604455
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21937,770,667 - 37,828,328 (+)NCBI
Rnor_6.01941,805,252 - 41,860,076 (-)NCBI
Rnor_5.01952,628,652 - 52,684,797 (-)NCBI
RGSC_v3.41939,676,021 - 39,734,854 (+)RGD
Celera1937,174,653 - 37,231,881 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097450   ⟹   XP_038953378
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21937,744,666 - 37,831,131 (+)NCBI
RefSeq Acc Id: XM_039097451   ⟹   XP_038953379
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21937,763,354 - 37,831,131 (+)NCBI
RefSeq Acc Id: XM_039097452   ⟹   XP_038953380
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21937,744,884 - 37,831,131 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_604455   ⟸   NM_134460
- UniProtKB: B2RYN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038953378   ⟸   XM_039097450
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953380   ⟸   XM_039097452
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953379   ⟸   XM_039097451
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000077402   ⟸   ENSRNOT00000108684
RefSeq Acc Id: ENSRNOP00000090346   ⟸   ENSRNOT00000099597
RefSeq Acc Id: ENSRNOP00000097388   ⟸   ENSRNOT00000107107
Protein Domains
GAE

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
19 39723275 39723276 G A snv SS/JrHsdMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619785 AgrOrtholog
BioCyc Gene G2FUF-5710 BioCyc
Ensembl Genes ENSRNOG00000069458 Ensembl, ENTREZGENE
Ensembl Protein ENSRNOP00000077402 ENTREZGENE
  ENSRNOP00000097388 ENTREZGENE
Ensembl Transcript ENSRNOT00000107107 ENTREZGENE
  ENSRNOT00000108684 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9029827 IMAGE-MGC_LOAD
InterPro AP1_complex_gsu UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/TrEMBL
  Clathrin/coatomer_app_Ig-like UniProtKB/TrEMBL
  Clathrin_a/b/g-adaptin_app_Ig UniProtKB/TrEMBL
  Clathrin_g-adaptin_app UniProtKB/TrEMBL
KEGG Report rno:171494 UniProtKB/TrEMBL
MGC_CLONE MGC:188737 IMAGE-MGC_LOAD
NCBI Gene 171494 ENTREZGENE
Pfam Adaptin_N UniProtKB/TrEMBL
  Alpha_adaptinC2 UniProtKB/TrEMBL
PhenoGen Ap1g1 PhenoGen
PIRSF AP1_complex_gamma UniProtKB/TrEMBL
PROSITE GAE UniProtKB/TrEMBL
SMART Alpha_adaptinC2 UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Clath_adapt UniProtKB/TrEMBL
UniProt B2RYN6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-03 Ap1g1  adaptor related protein complex 1 subunit gamma 1  Ap1g1  adaptor-related protein complex 1, gamma 1 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Ap1g1  adaptor-related protein complex 1, gamma 1 subunit    adaptor protein complex AP-1, gamma 1 subunit  Name updated 1299863 APPROVED
2002-08-07 Ap1g1  adaptor protein complex AP-1, gamma 1 subunit      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction interacts with microtubules 634622