.
alpha-amino acid metabolic process - Ontology Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:alpha-amino acid metabolic process
go back to main search page
Accession:GO:1901605 term browser browse the term
Definition:The chemical reactions and pathways involving an alpha-amino acid.
Synonyms:exact_synonym: alpha-amino acid metabolism

 Loading Annotations... 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
X

show annotations for term's descendants           Sort by:
alpha-amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in ISO
IEA 		(PMID:10529246)
GO_REF:0000107 		RGD
Ensembl		 PMID:10529246 GO_REF:0000107 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
'de novo' NAD+ biosynthetic process from L-tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr10:103,046,129...103,061,718
Ensembl chr10:103,046,180...103,061,718 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in
acts_upstream_of_or_within 		IEA
ISO
IBA 		GO_REF:0000104
MGI:6723745 (PMID:30127395), (PMID:30478397), (PMID:37078472)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:30127395 PMID:30478397 PMID:37078472 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:10,845,235...10,864,863
Ensembl chr 6:10,845,771...10,864,877 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:67,430,654...67,442,726
Ensembl chr16:67,430,578...67,442,730 		JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:67,459,158...67,498,052
Ensembl chr16:67,459,190...67,496,324 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr13:90,089,340...90,121,108
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Kynu kynureninase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Nadsyn1 NAD synthetase 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:25423279)
(PMID:31883644) 		UniProt
RGD		 PMID:25423279 PMID:31883644 GO_REF:0000024 NCBI chr 1:198,981,559...199,009,853
Ensembl chr 1:198,981,604...199,009,869 		JBrowse link
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 involved_in ISO (PMID:25423279) RGD PMID:25423279 NCBI chr13:65,105,950...65,277,350
Ensembl chr13:65,105,950...65,278,484 		JBrowse link
G Qprt quinolinate phosphoribosyltransferase involved_in ISO MGI:6723745 (PMID:30127395), (PMID:30478397), (PMID:37078472) RGD PMID:30127395 PMID:30478397 PMID:37078472 NCBI chr 1:181,718,189...181,733,486
Ensembl chr 1:181,718,190...181,733,486 		JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 involved_in ISO
IEA 		(PMID:21998747)
GO_REF:0000107 		RGD
Ensembl		 PMID:21998747 GO_REF:0000107 NCBI chr 1:250,806,430...250,833,544
Ensembl chr 1:240,857,126...240,884,568 		JBrowse link
ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase acts_upstream_of_or_within ISO MGI:3604881 (PMID:12559843) RGD PMID:12559843 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Glul glutamate-ammonia ligase IDA RGD PMID:28323 RGD:2301547 NCBI chr13:68,519,500...68,585,554
Ensembl chr13:66,025,630...66,035,108 		JBrowse link
arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in ISO
IEA 		(PMID:24895913)
GO_REF:0000107 		RGD
Ensembl		 PMID:24895913 GO_REF:0000107 NCBI chr 2:234,667,499...234,800,322
Ensembl chr 2:234,667,491...234,799,339 		JBrowse link
G Fah fumarylacetoacetate hydrolase acts_upstream_of_or_within ISO
IEA 		MGI:2155424|MGI:2155425 (PMID:11209059)
GO_REF:0000107 		RGD
Ensembl		 PMID:11209059 GO_REF:0000107 NCBI chr 1:147,957,931...147,980,708
Ensembl chr 1:138,548,834...138,571,505 		JBrowse link
G Nos1 nitric oxide synthase 1 involved_in IDA
IBA 		PMID:1383204
GO_REF:0000033 		GO_Central PMID:1383204 GO_REF:0000033, RGD:8553334 NCBI chr12:44,276,011...44,456,371
Ensembl chr12:38,626,714...38,710,945 		JBrowse link
G Nos2 nitric oxide synthase 2 involved_in ISO
IBA 		(PMID:7504305)
(PMID:1383204)
GO_REF:0000033 		RGD
GO_Central		 PMID:1383204 PMID:7504305 GO_REF:0000033 NCBI chr10:64,313,335...64,349,221
Ensembl chr10:63,815,308...63,851,210 		JBrowse link
G Nos3 nitric oxide synthase 3 involved_in ISO
IBA
IEA 		(PMID:1378832), (PMID:7488039)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:1378832 PMID:7488039 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oat ornithine aminotransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
arginine deiminase pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Padi3 peptidyl arginine deiminase 3 NAS RGD PMID:9192727 RGD:69926 NCBI chr 5:153,089,717...153,117,146
Ensembl chr 5:153,089,717...153,117,146 		JBrowse link
arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:154,043,665...154,074,278
Ensembl chr 5:154,060,151...154,074,276 		JBrowse link
G Arg1 arginase 1 involved_in IDA
IEA 		GO_REF:0000002
GO_REF:0000043 		InterPro
UniProt
RGD		 PMID:4062872 GO_REF:0000002 GO_REF:0000043, RGD:2300098 NCBI chr 1:20,475,878...20,488,422
Ensembl chr 1:20,475,968...20,488,422 		JBrowse link
G Arg2 arginase 2 involved_in IMP
IEA 		GO_REF:0000002
GO_REF:0000043 		InterPro
UniProt
RGD		 PMID:16537391 GO_REF:0000002 GO_REF:0000043, RGD:1582129 NCBI chr 6:97,936,002...97,961,379
Ensembl chr 6:97,936,002...97,961,378 		JBrowse link
G Asl argininosuccinate lyase involved_in ISO (PMID:9045711) RGD PMID:9045711 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:17322279 GO_REF:0000033, RGD:1625578 NCBI chr 2:234,667,499...234,800,322
Ensembl chr 2:234,667,491...234,799,339 		JBrowse link
G Fh fumarate hydratase involved_in IEA
ISO 		GO_REF:0000107
(PMID:23643539) 		Ensembl
RGD		 PMID:23643539 GO_REF:0000107 NCBI chr13:90,056,565...90,082,450
Ensembl chr13:87,524,337...87,550,266 		JBrowse link
G Slc39a8 solute carrier family 39 member 8 acts_upstream_of ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:28481222) 		UniProt
Ensembl
RGD		 PMID:28481222 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:226,845,686...226,992,668
Ensembl chr 2:224,256,654...224,319,129 		JBrowse link
argininosuccinate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase IDA RGD PMID:8586639 PMID:4062872 RGD:1599287, RGD:2300098 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:7977368) 		Ensembl
GO_Central
RGD		 PMID:7977368 PMID:4062872 GO_REF:0000033 GO_REF:0000107, RGD:2300098 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA
ISO 		GO_REF:0000002
GO_REF:0000043
GO_REF:0000033
(PMID:2573597) 		InterPro
UniProt
GO_Central
RGD		 PMID:2573597 PMID:2887559 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043, RGD:2316002 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423 		JBrowse link
G Asnsd1 asparagine synthetase domain containing 1 involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:48,126,808...48,139,073
Ensembl chr 9:48,126,808...48,139,073 		JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 involved_in
acts_upstream_of_or_within 		ISO
IBA
IDA 		(PMID:19839645)
GO_REF:0000033
PMID:12753071 		RGD
GO_Central		 PMID:19839645 PMID:12753071 PMID:12753071 GO_REF:0000033, RGD:1299508, RGD:1299508 NCBI chr 1:206,006,103...206,027,115
Ensembl chr 1:206,006,109...206,027,108 		JBrowse link
asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in IDA PMID:9575212 UniProt PMID:9575212 RGD:1299414 NCBI chr 6:131,176,727...131,196,268
Ensembl chr 6:131,176,874...131,196,268 		JBrowse link
G Nit2 nitrilase family, member 2 involved_in ISO
IBA
IEA 		(PMID:22674578)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22674578 GO_REF:0000033 GO_REF:0000107 NCBI chr11:43,363,839...43,378,713
Ensembl chr11:43,363,985...43,375,024 		JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:4193185) 		GO_Central
Ensembl
RGD		 PMID:4193185 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO (PMID:9163533) RGD PMID:9163533 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
G ENSRNOG00000064101 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:9,679,203...9,680,482 JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO
IEA 		(PMID:2241899)
GO_REF:0000107 		RGD
Ensembl		 PMID:2241899 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in ISO
IBA 		(PMID:2567216)
GO_REF:0000033 		RGD
GO_Central		 PMID:2567216 GO_REF:0000033 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Got2-ps6 glutamic-oxaloacetic transaminase 2, pseudogene 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:60,551,686...60,552,959
Ensembl chr  X:60,551,686...60,552,959 		JBrowse link
aspartate family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 6:131,176,727...131,196,268
Ensembl chr 6:131,176,874...131,196,268 		JBrowse link
aspartate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 IDA RGD PMID:3759987 RGD:5135303 NCBI chr 6:131,679,795...131,702,012
Ensembl chr 6:131,679,701...131,701,998 		JBrowse link
G Adss2 adenylosuccinate synthase 2 IDA RGD PMID:71897 RGD:5135533 NCBI chr13:89,769,240...89,799,577
Ensembl chr13:89,769,244...89,799,604 		JBrowse link
G Aspa aspartoacylase involved_in ISO MGI:2447776 (PMID:28077719) RGD PMID:28077719 NCBI chr10:58,390,204...58,443,790
Ensembl chr10:57,892,104...57,945,272 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA 		(PMID:7977368)
GO_REF:0000107 		RGD
Ensembl		 PMID:7977368 GO_REF:0000107 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Ddo D-aspartate oxidase acts_upstream_of_or_within ISO
IEA 		MGI:3625623 (PMID:16525061)
GO_REF:0000107 		RGD
Ensembl		 PMID:16525061 GO_REF:0000107 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IDA
ISS 		GO_REF:0000024 UniProt
RGD		 PMID:2837211 GO_REF:0000024, RGD:2289377 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IMP
ISS 		GO_REF:0000024 UniProt
RGD		 PMID:12686151 GO_REF:0000024, RGD:2289396 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Nat8l N-acetyltransferase 8-like involved_in ISO MGI:87914 (PMID:28077719) RGD PMID:28077719 NCBI chr14:76,756,077...76,762,712
Ensembl chr14:76,756,077...76,763,411 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA 		(PMID:36735752)
GO_REF:0000107 		RGD
Ensembl		 PMID:36735752 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO
IEA 		(PMID:11092761), (PMID:26297558)
GO_REF:0000107 		RGD
Ensembl		 PMID:11092761 PMID:26297558 GO_REF:0000107 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IDA RGD PMID:7053379 RGD:10755426 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Otc ornithine transcarbamylase involved_in IDA
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:2556444), (PMID:8112735) 		Ensembl
GO_Central
RGD		 PMID:2556444 PMID:8112735 PMID:9472964 GO_REF:0000033 GO_REF:0000107, RGD:4144071 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
citrulline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA 		(PMID:7977368)
GO_REF:0000107 		RGD
Ensembl		 PMID:7977368 GO_REF:0000107 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Ddah1 dimethylarginine dimethylaminohydrolase 1 involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000033
(PMID:19663506) 		UniProt
Ensembl
GO_Central
RGD		 PMID:19663506 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:234,667,499...234,800,322
Ensembl chr 2:234,667,491...234,799,339 		JBrowse link
G Ddah2 DDAH family member 2, ADMA-independent NOT|involved_in ISO (PMID:21493890), (PMID:37296100) RGD PMID:21493890 PMID:37296100 NCBI chr20:3,766,115...3,769,161
Ensembl chr20:3,761,465...3,764,511 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:2177757 (PMID:17213233) RGD PMID:17213233 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
cysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:24416422)
GO_REF:0000107
GO_REF:0000043
GO_REF:0000041
MGI:1857139 (PMID:15030387) 		RGD
Ensembl
UniProt		 PMID:15030387 PMID:24416422 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cth cystathionine gamma-lyase involved_in IEA
ISS
ISO 		GO_REF:0000041
GO_REF:0000043
GO_REF:0000107
GO_REF:0000024
(PMID:10212249) 		UniProt
Ensembl
RGD		 PMID:10212249 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12468440) 		Ensembl
RGD		 PMID:12468440 GO_REF:0000107 NCBI chr20:13,074,141...13,103,551
Ensembl chr20:13,074,700...13,108,442 		JBrowse link
cysteine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA
IBA 		GO_REF:0000104
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA GO_REF:0000002
GO_REF:0000104 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cth cystathionine gamma-lyase involved_in ISO
IBA
IEA 		(PMID:19428278)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:19428278 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cdo1 cysteine dioxygenase type 1 TAS RGD PMID:2334417 RGD:68765 NCBI chr18:39,432,473...39,447,253
Ensembl chr18:39,432,474...39,447,296 		JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:2294991) 		UniProt
Ensembl
RGD		 PMID:2294991 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:87,510,251...87,548,896
Ensembl chr 8:78,630,127...78,668,544 		JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit acts_upstream_of_or_within ISO
IEA 		MGI:2447852 (PMID:12384496)
GO_REF:0000107 		RGD
Ensembl		 PMID:12384496 GO_REF:0000107 NCBI chr 2:213,032,135...213,052,192
Ensembl chr 2:210,347,482...210,367,535 		JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA
IBA 		(PMID:16616139), (PMID:20603179)
GO_REF:0000107
(PMID:20603179)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16616139 PMID:20603179 GO_REF:0000033 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA 		(PMID:29274788)
GO_REF:0000107
(PMID:16751595), (PMID:2572224) 		RGD
Ensembl		 PMID:2572224 PMID:16751595 PMID:29274788 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Ddo D-aspartate oxidase involved_in IDA
IEA
ISO
IBA 		PMID:25747990
GO_REF:0000107
(PMID:20603179), (PMID:25747990), (PMID:26058797), (PMID:32553892), (PMID:37189369)
GO_REF:0000033
GO_REF:0000117
(PMID:16751595), (PMID:17234685)
(PMID:20603179), (PMID:25747990), (PMID:28629864)
(PMID:33650155)
PMID:29292239 		Ensembl
RGD
GO_Central
UniProt		 PMID:16751595 PMID:17234685 PMID:20603179 PMID:25747990 PMID:26058797 More... GO_REF:0000033 GO_REF:0000107 GO_REF:0000117, RGD:401901226, RGD:401901239 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
D-amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Ddo D-aspartate oxidase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:44,090,823...44,109,962
Ensembl chr20:44,090,914...44,133,095 		JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srr serine racemase involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:11054547), (PMID:15193426)
(PMID:10557334), (PMID:11054547), (PMID:12021263), (PMID:15536068), (PMID:15710237)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15536068 More... GO_REF:0000033 GO_REF:0000107 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
D-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA
IBA 		(PMID:18544534)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18544534 GO_REF:0000033 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
D-serine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA 		(PMID:21679769)
GO_REF:0000107 		RGD
Ensembl		 PMID:21679769 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Srr serine racemase involved_in ISO
IEA
IDA 		(PMID:20106978)
GO_REF:0000107 		RGD
Ensembl		 PMID:20106978 PMID:20106978 GO_REF:0000107, RGD:8554326 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Th tyrosine hydroxylase acts_upstream_of_or_within
involved_in 		IDA
ISO
IBA
IMP 		MGI:1860450 (PMID:7592982), (PMID:7715703), (PMID:9520487)
GO_REF:0000033
PMID:11943812 		RGD
GO_Central		 PMID:7592982 PMID:7715703 PMID:9520487 PMID:2427363 PMID:20025246 More... GO_REF:0000033, RGD:1580046, RGD:4139888, RGD:5129111, RGD:5130972 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
gamma-aminobutyrate shunt term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad2 glutamate decarboxylase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:8999827 GO_REF:0000033, RGD:1625237 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155 		JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA
ISO
IBA
ISS 		GO_REF:0000107
(PMID:22228304)
GO_REF:0000033
GO_REF:0000024
(PMID:16899818), (PMID:22049910) 		Ensembl
RGD
GO_Central
UniProt		 PMID:16899818 PMID:22049910 PMID:22228304 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:617,252...633,424
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) RGD PMID:11032875 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:56,097,166...56,191,841
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
glutamate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad1 glutamate decarboxylase 1 involved_in ISO
IEA 		(PMID:17384644)
GO_REF:0000107 		RGD
Ensembl		 PMID:17384644 GO_REF:0000107 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO
IBA 		(PMID:11032875), (PMID:6121377)
GO_REF:0000033 		RGD
GO_Central		 PMID:6121377 PMID:11032875 GO_REF:0000033 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:4193185)
GO_REF:0000107 		RGD
Ensembl		 PMID:4193185 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
glutamate catabolic process via 2-hydroxyglutarate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adhfe1 alcohol dehydrogenase, iron containing, 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:16435184) 		UniProt
RGD		 PMID:16435184 GO_REF:0000024 NCBI chr 5:9,705,966...9,732,580
Ensembl chr 5:9,705,970...9,732,517 		JBrowse link
glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in ISO
ISS 		(PMID:18620547)
GO_REF:0000024 		RGD
UniProt		 PMID:18620547 GO_REF:0000024 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO
IEA 		(PMID:11092761)
GO_REF:0000107 		RGD
Ensembl		 PMID:11092761 GO_REF:0000107 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 acts_upstream_of_or_within ISO MGI:2180159 (PMID:17854388) RGD PMID:17854388 NCBI chr17:40,132,339...40,158,677
Ensembl chr17:40,130,883...40,158,677 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856982 (PMID:28701731)
GO_REF:0000107 		RGD
Ensembl		 PMID:28701731 GO_REF:0000107 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Dglucy D-glutamate cyclase involved_in IBA
ISO 		GO_REF:0000033
(PMID:28266638) 		GO_Central
RGD		 PMID:28266638 GO_REF:0000033 NCBI chr 6:120,055,480...120,130,910
Ensembl chr 6:120,055,460...120,130,910 		JBrowse link
G Fpgs folylpolyglutamate synthase involved_in ISO (PMID:3619447) RGD PMID:3619447 NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563 		JBrowse link
G Gclc glutamate-cysteine ligase, catalytic subunit involved_in ISO
IEA
ISS 		(PMID:12663448), (PMID:2294991), (PMID:9841880)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:2294991 PMID:9841880 PMID:12663448 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:87,510,251...87,548,896
Ensembl chr 8:78,630,127...78,668,544 		JBrowse link
G Gclm glutamate cysteine ligase, modifier subunit involved_in ISO
IEA
ISS 		(PMID:9841880), (PMID:9895302)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:9841880 PMID:9895302 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:213,032,135...213,052,192
Ensembl chr 2:210,347,482...210,367,535 		JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in ISO
ISS 		(PMID:21447318), (PMID:24047895)
GO_REF:0000024 		RGD
UniProt		 PMID:21447318 PMID:24047895 GO_REF:0000024 NCBI chr20:13,074,141...13,103,551
Ensembl chr20:13,074,700...13,108,442 		JBrowse link
G Glul glutamate-ammonia ligase IDA RGD PMID:4403443 RGD:2301548 NCBI chr13:68,519,500...68,585,554
Ensembl chr13:66,025,630...66,035,108 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) RGD PMID:12764149 NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089 		JBrowse link
G Nags N-acetylglutamate synthase involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:12049647) 		GO_Central
Ensembl
RGD		 PMID:12049647 GO_REF:0000033 GO_REF:0000107 NCBI chr10:87,098,330...87,102,465
Ensembl chr10:87,098,330...87,102,465 		JBrowse link
G Tat tyrosine aminotransferase involved_in ISO
IEA
ISS 		(PMID:7999802)
GO_REF:0000107
(PMID:21153519)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:7999802 PMID:21153519 GO_REF:0000024 GO_REF:0000107 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031 		JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glul glutamate-ammonia ligase involved_in IDA
IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro
RGD		 PMID:4403443 PMID:28323 GO_REF:0000002 GO_REF:0000033, RGD:2301548, RGD:2301547 NCBI chr13:68,519,500...68,585,554
Ensembl chr13:66,025,630...66,035,108 		JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in
NOT|involved_in 		IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:33,416,362...33,447,919
Ensembl chr 9:33,420,484...33,447,907 		JBrowse link
glutamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in
acts_upstream_of_or_within 		TAS
ISO
IBA
IEA
ISS 		(PMID:22228304)
MGI:3514104 (PMID:16641247)
GO_REF:0000033
GO_REF:0000107
(PMID:22049910)
GO_REF:0000024 		RGD
GO_Central
Ensembl
UniProt		 PMID:16641247 PMID:22049910 PMID:22228304 PMID:1918000 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107, RGD:728510 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:617,252...633,424
Ensembl chr 7:617,288...633,426 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase IDA RGD PMID:8463258 RGD:633710 NCBI chr14:31,215,741...31,250,144
Ensembl chr14:31,216,165...31,250,144 		JBrowse link
glutamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 IEP RGD PMID:12522136 RGD:5135508 NCBI chr 6:131,679,795...131,702,012
Ensembl chr 6:131,679,701...131,701,998 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO
IEA 		MGI:1856982 (PMID:28701731)
GO_REF:0000107 		RGD
Ensembl		 PMID:28701731 GO_REF:0000107 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEP
IEA
IBA
IDA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:2474281 PMID:2803258 GO_REF:0000002 GO_REF:0000033, RGD:5132588, RGD:10755425 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Gls glutaminase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:56,836,584...56,908,861
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:617,252...633,424
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:23663782) 		UniProt
RGD		 PMID:23663782 GO_REF:0000024 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Mecp2 methyl CpG binding protein 2 acts_upstream_of_or_within ISO
IEA 		MGI:2137311 (PMID:17237885)
GO_REF:0000107 		RGD
Ensembl		 PMID:17237885 GO_REF:0000107 NCBI chr  X:156,932,481...156,995,981
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Nit2 nitrilase family, member 2 involved_in ISO
IBA
IEA 		(PMID:22674578)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22674578 GO_REF:0000033 GO_REF:0000107 NCBI chr11:43,363,839...43,378,713
Ensembl chr11:43,363,985...43,375,024 		JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase IDA RGD PMID:3436958 RGD:1599004 NCBI chr10:53,690,301...53,711,811
Ensembl chr10:53,691,626...53,708,420 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Sirt4 sirtuin 4 involved_in ISO
IEA 		(PMID:23562301), (PMID:23663782)
GO_REF:0000107 		RGD
Ensembl		 PMID:23562301 PMID:23663782 GO_REF:0000107 NCBI chr12:41,125,533...41,139,440
Ensembl chr12:41,131,262...41,139,439 		JBrowse link
G Ucp2 uncoupling protein 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:24395786) 		UniProt
Ensembl
RGD		 PMID:24395786 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:164,251,373...164,257,742
Ensembl chr 1:154,839,209...154,845,611 		JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hao1 hydroxyacid oxidase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:121,757,400...121,828,721
Ensembl chr 3:121,771,836...121,828,721 		JBrowse link
G Sardh sarcosine dehydrogenase IDA RGD PMID:2417560 RGD:597830057 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 IDA from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IDA from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:103,094,681...103,100,169
Ensembl chr10:103,094,681...103,100,519 		JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000065410 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 2:178,497,468...178,499,169 JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in IDA
IEA
IBA 		in the presence of tetrahydrofolate
GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:3110140 GO_REF:0000002 GO_REF:0000033, RGD:2300383 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IDA
IEA
IBA 		in the presence of tetrahydrofolate
GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central
RGD		 PMID:3110140 GO_REF:0000002 GO_REF:0000033, RGD:2300383 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in IDA
IBA
ISO 		GO_REF:0000033
(PMID:22198249) 		GO_Central
RGD		 PMID:22198249 PMID:12383475 GO_REF:0000033, RGD:1599457 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in ISO
IEA 		(PMID:20018850)
GO_REF:0000107 		RGD
Ensembl		 PMID:20018850 GO_REF:0000107 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
glycine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amt aminomethyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:108,981,620...108,988,127
Ensembl chr 8:108,976,472...108,988,126 		JBrowse link
G Gldc glycine decarboxylase involved_in ISO
IEA 		(PMID:28244183)
GO_REF:0000002 		RGD
InterPro		 PMID:28244183 GO_REF:0000002 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097 		JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07067762.1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr 9:56,634,648...56,635,789 JBrowse link
G Amt aminomethyltransferase involved_in ISO
IEA 		(PMID:16051266)
GO_REF:0000107 		RGD
Ensembl		 PMID:16051266 GO_REF:0000107 NCBI chr 8:108,981,620...108,988,127
Ensembl chr 8:108,976,472...108,988,126 		JBrowse link
G ENSRNOG00000069283 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000002 		GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 Ensembl chr16:24,647,938...24,648,620 JBrowse link
G Gcsh glycine cleavage system protein H involved_in IMP
IEA
IBA 		GO_REF:0000104
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central
RGD		 PMID:6402507 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104, RGD:1598699 NCBI chr19:45,036,013...45,046,770
Ensembl chr19:45,036,011...45,046,792 		JBrowse link
G Gcshl1 glycine cleavage system protein H like 1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:260,311,346...260,312,097
Ensembl chr 1:260,311,343...260,311,843 		JBrowse link
G Gldc glycine decarboxylase involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:6778858 GO_REF:0000033, RGD:1642728 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097 		JBrowse link
glycine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baat bile acid CoA:amino acid N-acyltransferase involved_in ISO
IEA 		(PMID:8034703)
GO_REF:0000107 		RGD
Ensembl		 PMID:8034703 GO_REF:0000107 NCBI chr 5:68,647,166...68,656,137
Ensembl chr 5:63,850,705...63,860,685 		JBrowse link
G Fpgs folylpolyglutamate synthase involved_in ISO UniProtKB:Q924L9 (PMID:10964921) RGD PMID:10964921 NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563 		JBrowse link
G Gldc glycine decarboxylase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:227,883,249...227,962,119
Ensembl chr 1:227,883,249...227,962,097 		JBrowse link
G Glyat glycine-N-acyltransferase involved_in IEA
IBA
ISS
ISO 		GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(PMID:22475485) 		Ensembl
GO_Central
UniProt
RGD		 PMID:22475485 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:209,704,213...209,724,949
Ensembl chr 1:209,704,268...209,724,942 		JBrowse link
G Gnmt glycine N-methyltransferase involved_in IMP PMID:10756111 RGD
CAFA		 PMID:18501206 PMID:10756111 RGD:7242952, RGD:12793006 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:4414794 (PMID:30988181)
GO_REF:0000107 		RGD
Ensembl		 PMID:30988181 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in TAS
ISO
IDA 		(PMID:24698160) RGD PMID:24698160 PMID:15671219 PMID:15671219 RGD:1359815, RGD:1359815 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in TAS
IEA
ISO
IDA 		GO_REF:0000107
UniProtKB:G3HW36 (PMID:19513116)
(PMID:25619277), (PMID:29180469), (PMID:33015733) 		Ensembl
RGD		 PMID:19513116 PMID:25619277 PMID:29180469 PMID:33015733 PMID:15671219 More... GO_REF:0000107, RGD:1359815, RGD:2300380, RGD:1359815 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blmh bleomycin hydrolase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:61,772,112...61,815,212
Ensembl chr10:61,758,478...61,815,212 		JBrowse link
G Cbs cystathionine beta synthase involved_in ISO
IEA
ISS 		(PMID:18776696), (PMID:24416422)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18776696 PMID:24416422 GO_REF:0000024 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO (PMID:11466310) RGD PMID:11466310 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bphl biphenyl hydrolase like involved_in ISO (PMID:25333274) RGD PMID:25333274 NCBI chr17:30,800,939...30,837,277
Ensembl chr17:30,799,629...30,837,288 		JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within
involved_in 		TAS
IEA
ISO 		GO_REF:0000107
MGI:1857139 (PMID:10953023), (PMID:10993757), (PMID:15131763), (PMID:15555590), (PMID:15622513), (PMID:15916860), (PMID:16226235), (PMID:18541157), (PMID:7878023)
(PMID:19010420), (PMID:20031578), (PMID:23981774) 		Ensembl
RGD		 PMID:7878023 PMID:10953023 PMID:10993757 PMID:15131763 PMID:15555590 More... GO_REF:0000107, RGD:634704 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 involved_in ISO
IEA 		(PMID:20031578)
GO_REF:0000107 		RGD
Ensembl		 PMID:20031578 GO_REF:0000107 NCBI chr 9:68,614,153...68,737,037
Ensembl chr 9:68,614,153...68,737,033 		JBrowse link
G Dpep1 dipeptidase 1 involved_in ISO
IEA
ISS 		(PMID:20031578)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20031578 GO_REF:0000024 GO_REF:0000107 NCBI chr19:51,209,831...51,237,004
Ensembl chr19:51,219,660...51,235,257 		JBrowse link
G Mmut methylmalonyl-CoA mutase involved_in ISO
IEA 		(PMID:20031578)
GO_REF:0000107 		RGD
Ensembl		 PMID:20031578 GO_REF:0000107 NCBI chr 9:19,928,720...19,956,985
Ensembl chr 9:19,928,727...19,957,046 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in IEP
IEA
ISO 		GO_REF:0000107
(PMID:20031578) 		Ensembl
RGD		 PMID:20031578 PMID:18726220 GO_REF:0000107, RGD:2317121 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IDA
IBA
IMP 		GO_REF:0000033 GO_Central
RGD		 PMID:11730351 PMID:21121936 GO_REF:0000033, RGD:1601423, RGD:7207080 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IBA
ISO 		GO_REF:0000033
(PMID:17369066) 		GO_Central
RGD		 PMID:17369066 GO_REF:0000033 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
G Nox4 NADPH oxidase 4 involved_in ISO (PMID:20031578) RGD PMID:20031578 NCBI chr 1:150,313,736...150,491,480
Ensembl chr 1:140,901,097...141,077,406 		JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA 		(PMID:10934207)
GO_REF:0000107 		RGD
Ensembl		 PMID:10934207 GO_REF:0000107 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:16447251) 		Ensembl
RGD		 PMID:16447251 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilvbl ilvB acetolactate synthase like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:11,039,870...11,049,924
Ensembl chr 7:11,039,871...11,049,924 		JBrowse link
isoleucine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3028726 (PMID:14755340)
GO_REF:0000107 		RGD
Ensembl		 PMID:14755340 GO_REF:0000107 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in ISO
ISS 		(PMID:18620547)
GO_REF:0000024 		RGD
UniProt		 PMID:18620547 GO_REF:0000024 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in ISO
IEA
IBA
IDA 		(PMID:10672018), (PMID:26752518), (PMID:29208702), (PMID:29429898)
GO_REF:0000107
(PMID:26752518)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10672018 PMID:26752518 PMID:29208702 PMID:29429898 PMID:26752518 GO_REF:0000033 GO_REF:0000107, RGD:11342439 NCBI chr13:90,089,340...90,121,108
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Kyat1 kynurenine aminotransferase 1 involved_in ISO
ISS 		(PMID:19338303)
GO_REF:0000024 		RGD
UniProt		 PMID:19338303 GO_REF:0000024 NCBI chr 3:33,857,407...33,891,153
Ensembl chr 3:13,459,591...13,493,355 		JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in ISS
ISO 		GO_REF:0000024
(PMID:19029248) 		UniProt
RGD		 PMID:19029248 GO_REF:0000024 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227 		JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in ISO (PMID:17696873), (PMID:18492492), (PMID:22198249) RGD PMID:17696873 PMID:18492492 PMID:22198249 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Gpt glutamic--pyruvic transaminase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:110,295,599...110,300,134
Ensembl chr 7:108,416,642...108,419,494 		JBrowse link
G Gpt2 glutamic--pyruvic transaminase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610 		JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in ISO
IEA
IBA 		(PMID:20018850)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20018850 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
L-alanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpt2 glutamic--pyruvic transaminase 2 involved_in ISO (PMID:11863375) RGD PMID:11863375 NCBI chr19:21,526,800...21,561,314
Ensembl chr19:21,517,621...21,560,610 		JBrowse link
L-amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psat1 phosphoserine aminotransferase 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
L-arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in NAS
IEA
ISO
ISS 		GO_REF:0000043
GO_REF:0000041
(PMID:22081021)
(PMID:11747432), (PMID:11747433)
GO_REF:0000024 		UniProt
RGD		 PMID:11747432 PMID:11747433 PMID:22081021 PMID:2789519 GO_REF:0000024 GO_REF:0000041 GO_REF:0000043, RGD:632221 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IEA
IBA
IMP
ISO 		GO_REF:0000107
GO_REF:0000043
GO_REF:0000002
GO_REF:0000033
PMID:19491403
(PMID:18473344), (PMID:27287393), (PMID:8792870)
GO_REF:0000041 		Ensembl
UniProt
InterPro
GO_Central
RGD		 PMID:8792870 PMID:18473344 PMID:27287393 PMID:12470967 PMID:19491403 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107, RGD:631755, RGD:12859071 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Nags N-acetylglutamate synthase involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr10:87,098,330...87,102,465
Ensembl chr10:87,098,330...87,102,465 		JBrowse link
G Otc ornithine transcarbamylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
L-arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA
IBA 		GO_REF:0000002
GO_REF:0000033 		InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Otc ornithine transcarbamylase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
L-arginine catabolic process to proline via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oat ornithine aminotransferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423 		JBrowse link
L-asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO
IEA 		(PMID:11960987)
GO_REF:0000107 		RGD
Ensembl		 PMID:11960987 GO_REF:0000107 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in ISO (PMID:18492492) RGD PMID:18492492 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Cbs cystathionine beta synthase involved_in ISO
IEA 		(PMID:15520012)
GO_REF:0000107 		RGD
Ensembl		 PMID:15520012 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cdo1 cysteine dioxygenase type 1 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:16611641 GO_REF:0000033, RGD:2301357 NCBI chr18:39,432,473...39,447,253
Ensembl chr18:39,432,474...39,447,296 		JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase involved_in IDA PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615 		JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase involved_in IDA PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 7:133,308,571...133,337,914
Ensembl chr 7:133,308,574...133,337,615 		JBrowse link
L-cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdo1 cysteine dioxygenase type 1 NAS RGD PMID:8973325 RGD:632438 NCBI chr18:39,432,473...39,447,253
Ensembl chr18:39,432,474...39,447,296 		JBrowse link
L-glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 IDA RGD PMID:16489927 RGD:13504861 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA RGD PMID:16489927 RGD:13504861 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
L-histidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd1-ps1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:116,195,791...116,198,973 JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112 		JBrowse link
L-histidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:28,043,923...28,059,156
Ensembl chr 7:28,043,716...28,059,156 		JBrowse link
G Hal histidine ammonia lyase involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:8486363) 		GO_Central
Ensembl
InterPro
RGD		 PMID:8486363 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:28,007,449...28,037,701
Ensembl chr 7:28,006,972...28,037,701 		JBrowse link
G Hdc histidine decarboxylase involved_in
acts_upstream_of_or_within 		IEA
ISO
IBA 		GO_REF:0000107
(PMID:11478947)
GO_REF:0000033
(PMID:22767596) 		Ensembl
RGD
GO_Central		 PMID:11478947 PMID:22767596 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341 		JBrowse link
G Uroc1 urocanate hydratase 1 involved_in ISO
IEA
IBA 		(PMID:19304569)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:19304569 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:122,844,933...122,876,584
Ensembl chr 4:122,844,926...122,876,591 		JBrowse link
L-histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA GO_REF:0000041
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 NCBI chr 7:28,043,923...28,059,156
Ensembl chr 7:28,043,716...28,059,156 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735 		JBrowse link
G Hal histidine ammonia lyase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:28,007,449...28,037,701
Ensembl chr 7:28,006,972...28,037,701 		JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:122,844,933...122,876,584
Ensembl chr 4:122,844,926...122,876,591 		JBrowse link
L-histidine catabolic process to glutamate and formate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:28,043,923...28,059,156
Ensembl chr 7:28,043,716...28,059,156 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735 		JBrowse link
G Hal histidine ammonia lyase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:28,007,449...28,037,701
Ensembl chr 7:28,006,972...28,037,701 		JBrowse link
G Uroc1 urocanate hydratase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:122,844,933...122,876,584
Ensembl chr 4:122,844,926...122,876,591 		JBrowse link
L-histidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amdhd1 amidohydrolase domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:28,043,923...28,059,156
Ensembl chr 7:28,043,716...28,059,156 		JBrowse link
G Ftcd formimidoyltransferase cyclodeaminase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:12,055,203...12,068,717
Ensembl chr20:12,055,208...12,068,735 		JBrowse link
G Hal histidine ammonia lyase involved_in TAS
IEA 		GO_REF:0000043 UniProt
RGD		 PMID:12376330 GO_REF:0000043, RGD:628345 NCBI chr 7:28,007,449...28,037,701
Ensembl chr 7:28,006,972...28,037,701 		JBrowse link
G Hdc histidine decarboxylase IDA RGD PMID:4449071 PMID:9525922 PMID:12204113 PMID:14622303 PMID:7075603 More... RGD:2303726, RGD:2303735, RGD:2303734, RGD:2303733, RGD:2303728, RGD:2303727 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341 		JBrowse link
L-isoleucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase, short/branched chain involved_in ISO
ISS
IEA 		(PMID:11013134)
GO_REF:0000024
GO_REF:0000041
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11013134 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:195,619,088...195,660,564
Ensembl chr 1:186,188,987...186,230,379 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO
IEA 		(PMID:1979337), (PMID:8103405)
GO_REF:0000107 		RGD
Ensembl		 PMID:1979337 PMID:8103405 GO_REF:0000107 NCBI chr 8:62,876,003...62,905,080
Ensembl chr 8:53,979,813...54,008,855 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within IDA
IEA
ISO 		GO_REF:0000107
MGI:3772355 (PMID:17767905) 		Ensembl
RGD		 PMID:17767905 PMID:11733007 GO_REF:0000107, RGD:1582175 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase IMP RGD PMID:27472223 RGD:39131293 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISO
IEA
ISS 		(PMID:18996107), (PMID:19706438)
GO_REF:0000107
GO_REF:0000041
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18996107 PMID:19706438 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:21,089,122...21,109,488 		JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kyat1 kynurenine aminotransferase 1 involved_in IDA
IEA 		GO_REF:0000041 UniProt
RGD		 PMID:7796908 GO_REF:0000041, RGD:9685040 NCBI chr 3:33,857,407...33,891,153
Ensembl chr 3:13,459,591...13,493,355 		JBrowse link
G Kyat3 kynurenine aminotransferase 3 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:231,701,881...231,747,462
Ensembl chr 2:231,701,963...231,747,227 		JBrowse link
G Kynu kynureninase involved_in IEA GO_REF:0000041
GO_REF:0000104 		UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
L-kynurenine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmo kynurenine 3-monooxygenase IDA RGD PMID:23690293 RGD:13513904 NCBI chr13:90,089,340...90,121,108
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
L-leucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:11733007 GO_REF:0000033, RGD:1582175 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
L-leucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Auh AU RNA binding methylglutaconyl-CoA hydratase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:12,329,522...12,424,882
Ensembl chr17:12,329,524...12,424,896 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase IMP RGD PMID:27472223 RGD:39131293 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:153,461,738...153,475,552
Ensembl chr 5:148,178,252...148,192,068 		JBrowse link
G Hmgcll1 3-hydroxy-3-methylglutaryl-CoA lyase like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:76,757,301...76,887,300
Ensembl chr 8:76,757,497...76,886,816 		JBrowse link
G Ivd isovaleryl-CoA dehydrogenase involved_in IEA
IBA
IDA
ISO 		GO_REF:0000041
GO_REF:0000033
PMID:6401713
(PMID:7640268) 		UniProt
GO_Central
RGD		 PMID:7640268 PMID:6401713 GO_REF:0000033 GO_REF:0000041, RGD:8554099 NCBI chr 3:105,851,710...105,872,144
Ensembl chr 3:105,851,683...105,872,575 		JBrowse link
G Mccc1 methylcrotonyl-CoA carboxylase subunit 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:118,799,147...118,851,181
Ensembl chr 2:118,799,150...118,851,222 		JBrowse link
G Mccc2 methylcrotonyl-CoA carboxylase subunit 2 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr 2:31,304,927...31,375,978
Ensembl chr 2:31,304,932...31,375,972 		JBrowse link
L-leucine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3028726|MGI:3772355 (PMID:14755340), (PMID:17767905)
GO_REF:0000107 		RGD
Ensembl		 PMID:14755340 PMID:17767905 GO_REF:0000107 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
G Dao D-amino-acid oxidase acts_upstream_of_or_within ISO
IEA 		MGI:3528694 (PMID:15026304)
GO_REF:0000107 		RGD
Ensembl		 PMID:15026304 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Ivd isovaleryl-CoA dehydrogenase TAS RGD PMID:2777793 RGD:631718 NCBI chr 3:105,851,710...105,872,144
Ensembl chr 3:105,851,683...105,872,575 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase acts_upstream_of_or_within ISO (PMID:10567240) RGD PMID:10567240 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in ISO
IEA
IBA 		(PMID:10642506)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10642506 GO_REF:0000033 GO_REF:0000107 NCBI chr10:62,769,874...62,783,484
Ensembl chr10:62,769,900...62,782,370 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:29,509,392...29,544,332
Ensembl chr16:29,509,394...29,544,332 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296 		JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in ISO
IEA
IBA 		(PMID:18230605)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in ISO
IBA
IEA 		(PMID:18230605)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:24,895,525...24,912,475
Ensembl chr 2:24,895,533...24,912,475 		JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in ISO
IEA
ISS 		(PMID:15938715)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000024 		RGD
Ensembl
InterPro
UniProt		 PMID:15938715 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:45,306,841...45,313,842 		JBrowse link
G Apip APAF1 interacting protein involved_in ISO
IEA
IBA 		(PMID:22837397), (PMID:23285211)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000033 		RGD
Ensembl
InterPro
UniProt
GO_Central		 PMID:22837397 PMID:23285211 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:89,431,964...89,458,000
Ensembl chr 3:89,432,037...89,458,340 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in ISO
IEA
IBA
ISS 		(PMID:15843022)
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000033
GO_REF:0000024 		RGD
InterPro
UniProt
GO_Central		 PMID:15843022 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr14:9,531,336...9,557,797
Ensembl chr14:9,531,339...9,569,273 		JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr19:23,907,327...23,913,721
Ensembl chr19:23,907,335...23,913,320 		JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000041 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr 5:103,874,460...103,920,684
Ensembl chr 5:103,873,020...103,939,406 		JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07068905.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:817,915...819,124 JBrowse link
G Fah fumarylacetoacetate hydrolase involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000043
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000104 NCBI chr 1:147,957,931...147,980,708
Ensembl chr 1:138,548,834...138,571,505 		JBrowse link
G Gstz1 glutathione S-transferase zeta 1 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000043
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr 6:112,525,576...112,536,228
Ensembl chr 6:106,794,074...106,805,284 		JBrowse link
G Hgd homogentisate 1, 2-dioxygenase involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr11:63,086,750...63,138,325
Ensembl chr11:63,086,752...63,138,323 		JBrowse link
G Hpd 4-hydroxyphenylpyruvate dioxygenase involved_in IEA GO_REF:0000041
GO_REF:0000043 		UniProt GO_REF:0000041 GO_REF:0000043 NCBI chr12:33,381,397...33,392,750
Ensembl chr12:33,381,231...33,392,766 		JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:17356132), (PMID:25767141) RGD PMID:17356132 PMID:25767141 NCBI chr 1:104,435,540...104,461,049
Ensembl chr 1:95,295,601...95,324,562 		JBrowse link
G Pah phenylalanine hydroxylase involved_in IEA GO_REF:0000041
GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000043 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Qdpr quinoid dihydropteridine reductase involved_in IEP
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:4155291 GO_REF:0000033, RGD:5128604 NCBI chr14:69,882,776...69,896,378
Ensembl chr14:65,670,131...65,683,854 		JBrowse link
G Tat tyrosine aminotransferase involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000043
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031 		JBrowse link
L-phenylalanine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase IDA RGD PMID:16953590 RGD:1601531 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IDA
TAS 		PMID:1465414
PMID:8618906 		CAFA
PINC		 PMID:1465414 PMID:8618906 RGD:12792994, RGD:8554245 NCBI chr20:29,573,362...29,587,181
Ensembl chr20:28,953,864...29,044,292
Ensembl chr20:28,953,864...29,044,292 		JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO MGI:3757641 (PMID:16532389) RGD PMID:16532389 NCBI chr 4:119,229,447...119,233,320
Ensembl chr 4:117,671,949...117,675,678 		JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in IEA GO_REF:0000041
GO_REF:0000104 		UniProt GO_REF:0000041 GO_REF:0000104 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
G Noxred1 NADP-dependent oxidoreductase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:106,862,350...106,888,113
Ensembl chr 6:106,862,343...106,884,712 		JBrowse link
G Oat ornithine aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA
ISO
IBA 		GO_REF:0000041
(PMID:23024808), (PMID:28258219)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:23024808 PMID:28258219 GO_REF:0000033 GO_REF:0000041 NCBI chr10:105,917,732...105,922,658
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA
ISO
IBA
ISS 		GO_REF:0000041
(PMID:23024808), (PMID:36414121)
GO_REF:0000033
GO_REF:0000024 		UniProt
RGD
GO_Central		 PMID:23024808 PMID:36414121 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr 7:107,603,543...107,608,831
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000043
GO_REF:0000002 		GO_Central
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in ISO
IEA
IBA 		(PMID:37627284)
GO_REF:0000107
GO_REF:0000043
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
UniProt
InterPro
GO_Central		 PMID:37627284 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
G Psph phosphoserine phosphatase involved_in ISS
IEA
IBA
ISO 		GO_REF:0000024
GO_REF:0000002
GO_REF:0000043
GO_REF:0000107
GO_REF:0000033
(PMID:14673469) 		UniProt
InterPro
Ensembl
GO_Central
RGD		 PMID:14673469 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr12:26,882,524...26,905,084
Ensembl chr12:26,883,133...26,905,074 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IDA RGD PMID:10457370 RGD:2300380 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
L-serine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in ISO
IEA 		(PMID:18776696)
GO_REF:0000107 		RGD
Ensembl		 PMID:18776696 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Sds serine dehydratase involved_in IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000033
(PMID:15689518), (PMID:18342636) 		Ensembl
GO_Central
RGD		 PMID:15689518 PMID:18342636 GO_REF:0000033 GO_REF:0000107 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:17482557) RGD PMID:17482557 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
L-serine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Agxt alanine--glyoxylate aminotransferase involved_in ISO (PMID:10347152) RGD PMID:10347152 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Cbs cystathionine beta synthase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19010420) 		UniProt
Ensembl
RGD		 PMID:19010420 GO_REF:0000024 GO_REF:0000107 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:4414794 (PMID:30988181) RGD PMID:30988181 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
G Psph phosphoserine phosphatase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:15291819) 		UniProt
Ensembl
RGD		 PMID:15291819 GO_REF:0000024 GO_REF:0000107 NCBI chr12:26,882,524...26,905,084
Ensembl chr12:26,883,133...26,905,074 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in TAS
ISO 		(PMID:24698160) RGD PMID:24698160 PMID:15671219 RGD:1359815 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in TAS
IEA
ISO 		GO_REF:0000107
(PMID:25619277), (PMID:29180469), (PMID:33015733) 		Ensembl
RGD		 PMID:25619277 PMID:29180469 PMID:33015733 PMID:15671219 GO_REF:0000107, RGD:1359815 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Srr serine racemase involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		PMID:20106978
GO_REF:0000107
(PMID:10557334), (PMID:12021263), (PMID:15710237), (PMID:16517698)
(PMID:11054547), (PMID:15193426), (PMID:20106978) 		Ensembl
RGD		 PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15710237 More... GO_REF:0000107, RGD:8554326 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
L-tryptophan catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase IDA RGD PMID:11802786 RGD:70243 NCBI chr13:39,200,412...39,245,954
Ensembl chr13:39,200,314...39,245,209 		JBrowse link
G Afmid arylformamidase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:103,046,129...103,061,718
Ensembl chr10:103,046,180...103,061,718 		JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase involved_in IEA
ISO 		GO_REF:0000104
MGI:1918039 (PMID:28792876) 		UniProt
RGD		 PMID:28792876 GO_REF:0000104 NCBI chr 6:10,845,235...10,864,863
Ensembl chr 6:10,845,771...10,864,877 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in IEA GO_REF:0000117
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr16:67,430,654...67,442,726
Ensembl chr16:67,430,578...67,442,730 		JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in IEA GO_REF:0000117
GO_REF:0000043 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr16:67,459,158...67,498,052
Ensembl chr16:67,459,190...67,496,324 		JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:17356132), (PMID:25767141) RGD PMID:17356132 PMID:25767141 NCBI chr 1:104,435,540...104,461,049
Ensembl chr 1:95,295,601...95,324,562 		JBrowse link
G Kmo kynurenine 3-monooxygenase involved_in IEA GO_REF:0000104
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr13:90,089,340...90,121,108
Ensembl chr13:87,557,286...87,588,881 		JBrowse link
G Kynu kynureninase involved_in ISO
IEA 		(PMID:17334708)
GO_REF:0000002
GO_REF:0000104 		RGD
InterPro
UniProt		 PMID:17334708 GO_REF:0000002 GO_REF:0000104 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in IEA GO_REF:0000043
GO_REF:0000117 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 2:167,269,581...167,287,511
Ensembl chr 2:167,269,579...167,287,511 		JBrowse link
L-tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase IDA RGD PMID:7236232 RGD:2303721 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:7236232 GO_REF:0000033, RGD:2303721 NCBI chr 2:167,269,581...167,287,511
Ensembl chr 2:167,269,579...167,287,511 		JBrowse link
L-tryptophan catabolic process to indole-3-acetate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:32818467), (PMID:32866000) RGD PMID:32818467 PMID:32866000 NCBI chr 1:104,435,540...104,461,049
Ensembl chr 1:95,295,601...95,324,562 		JBrowse link
L-tryptophan catabolic process to kynurenine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase involved_in
acts_upstream_of_or_within 		IEA
ISO
IBA 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000104
GO_REF:0000107
(PMID:15866519)
GO_REF:0000033 		UniProt
InterPro
Ensembl
RGD
GO_Central		 PMID:15866519 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr10:103,046,129...103,061,718
Ensembl chr10:103,046,180...103,061,718 		JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO
IBA 		GO_REF:0000002
GO_REF:0000107
GO_REF:0000104
(PMID:11751753), (PMID:2419335)
GO_REF:0000033 		InterPro
Ensembl
UniProt
RGD
GO_Central		 PMID:2419335 PMID:11751753 PMID:10719243 PMID:11513477 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107, RGD:2290190, RGD:2290543 NCBI chr16:67,430,654...67,442,726
Ensembl chr16:67,430,578...67,442,730 		JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:17671174)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000104
(PMID:17499941), (PMID:17671174)
GO_REF:0000033
GO_REF:0000041 		RGD
Ensembl
InterPro
UniProt
GO_Central		 PMID:17499941 PMID:17671174 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr16:67,459,158...67,498,052
Ensembl chr16:67,459,190...67,496,324 		JBrowse link
G Kynu kynureninase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:27,778,646...27,929,470
Ensembl chr 3:27,778,772...27,929,488 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000104
GO_REF:0000107
GO_REF:0000002
(PMID:27762317)
GO_REF:0000041 		UniProt
Ensembl
InterPro
RGD		 PMID:27762317 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 2:167,269,581...167,287,511
Ensembl chr 2:167,269,579...167,287,511 		JBrowse link
L-tryptophan metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856102 (PMID:4147174) RGD PMID:4147174 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase IDA RGD PMID:10719243 PMID:3899109 PMID:3400092 RGD:2290190, RGD:2291804, RGD:2290313 NCBI chr 2:167,269,581...167,287,511
Ensembl chr 2:167,269,579...167,287,511 		JBrowse link
L-valine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
G Ilvbl ilvB acetolactate synthase like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:11,039,870...11,049,924
Ensembl chr 7:11,039,871...11,049,924 		JBrowse link
L-valine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 involved_in IDA
IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:23835272) 		GO_Central
Ensembl
RGD		 PMID:23835272 PMID:2768248 GO_REF:0000033 GO_REF:0000107, RGD:1599052 NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase IMP RGD PMID:27472223 RGD:39131293 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Hibadh 3-hydroxyisobutyrate dehydrogenase involved_in IEA
IBA
ISS
ISO 		GO_REF:0000041
GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(PMID:16466957) 		UniProt
Ensembl
GO_Central
RGD		 PMID:16466957 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr 4:81,649,180...81,747,244
Ensembl chr 4:81,649,175...81,780,617 		JBrowse link
G Hibch 3-hydroxyisobutyryl-CoA hydrolase involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr 9:56,082,082...56,161,796
Ensembl chr 9:48,590,099...48,669,824 		JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:1,453,226...1,463,990
Ensembl chr 8:1,452,282...1,463,966 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in ISS
ISO 		GO_REF:0000024
(PMID:10775527) 		UniProt
RGD		 PMID:10775527 GO_REF:0000024 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
lysine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
melanin biosynthetic process from tyrosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in ISO
IEA
IBA 		(PMID:2169885), (PMID:33100333)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:2169885 PMID:33100333 GO_REF:0000033 GO_REF:0000107 NCBI chr15:101,469,159...101,508,029
Ensembl chr15:95,062,003...95,100,836 		JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein involved_in ISO
IEA 		(PMID:25513726), (PMID:32966160)
GO_REF:0000107 		RGD
Ensembl		 PMID:25513726 PMID:32966160 GO_REF:0000107 NCBI chr 1:116,252,026...116,581,838
Ensembl chr 1:107,116,278...107,446,074 		JBrowse link
G Slc45a2 solute carrier family 45, member 2 involved_in ISO
IEA 		(PMID:32966160)
GO_REF:0000107
(PMID:35469906) 		RGD
Ensembl		 PMID:32966160 PMID:35469906 GO_REF:0000107 NCBI chr 2:61,690,828...61,723,437
Ensembl chr 2:59,963,706...59,996,317 		JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:45,306,841...45,313,842 		JBrowse link
G Apip APAF1 interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:89,431,964...89,458,000
Ensembl chr 3:89,432,037...89,458,340 		JBrowse link
G Bhmt betaine-homocysteine S-methyltransferase involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		GO_REF:0000002
GO_REF:0000117
(PMID:15217352) 		InterPro
UniProt
RGD		 PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117, RGD:1359026 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in IEA GO_REF:0000117
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000117 NCBI chr 2:24,895,525...24,912,475
Ensembl chr 2:24,895,533...24,912,475 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:9,531,336...9,557,797
Ensembl chr14:9,531,339...9,569,273 		JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:23,907,327...23,913,721
Ensembl chr19:23,907,335...23,913,320 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in
acts_upstream_of 		IEA
ISO 		GO_REF:0000043
(PMID:25633902) 		UniProt
RGD		 PMID:25633902 GO_REF:0000043 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd1-ps1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:116,195,791...116,198,973 JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:2385823 (PMID:15217352)
GO_REF:0000033 		RGD
GO_Central		 PMID:15217352 GO_REF:0000033 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000002
GO_REF:0000117
GO_REF:0000043
GO_REF:0000033
PMID:20424322
MGI:2180496 (PMID:11158293)
(PMID:23825108) 		Ensembl
InterPro
UniProt
GO_Central
RGD		 PMID:11158293 PMID:23825108 PMID:15845641 PMID:20424322 PMID:11730351 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117, RGD:1359026, RGD:10054082, RGD:1601423 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO
IBA
IEA 		(PMID:11466310)
GO_REF:0000033
GO_REF:0000043
(PMID:17369066) 		RGD
GO_Central
UniProt		 PMID:11466310 PMID:17369066 GO_REF:0000033 GO_REF:0000043 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO
ISS 		(PMID:10677294)
GO_REF:0000024 		RGD
UniProt		 PMID:10677294 GO_REF:0000024 NCBI chr16:16,983,084...17,001,284
Ensembl chr16:16,983,022...17,001,274 		JBrowse link
methionine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:45,306,841...45,313,842 		JBrowse link
G Gnmt glycine N-methyltransferase acts_upstream_of_or_within ISO MGI:3842652 (PMID:17937387) RGD PMID:17937387 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:23190757) RGD PMID:23190757 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in ISO
IEA 		UniProtKB:P53128 (PMID:10551815)
GO_REF:0000002
GO_REF:0000107 		RGD
InterPro
Ensembl		 PMID:10551815 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IMP RGD PMID:21121936 RGD:7207080 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
N(omega),N(omega)-dimethyl-L-arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in IDA PMID:2123486 UniProt PMID:2123486 RGD:401901222 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO
IEA 		(PMID:19278978)
GO_REF:0000107 		RGD
Ensembl		 PMID:19278978 GO_REF:0000107 NCBI chr13:47,708,157...47,807,389
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO
IEA 		(PMID:19278978)
GO_REF:0000107 		RGD
Ensembl		 PMID:19278978 GO_REF:0000107 NCBI chr13:47,708,157...47,807,389
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
negative regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atcay ATCAY kinesin light chain interacting caytaxin involved_in ISO
IEA
ISS 		(PMID:16899818)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:16899818 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:9,138,485...9,162,249
Ensembl chr 7:8,487,763...8,512,663 		JBrowse link
negative regulation of ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Oaz1 ornithine decarboxylase antizyme 1 IDA RGD PMID:8166639 RGD:401851045 NCBI chr 7:8,883,855...8,886,315
Ensembl chr 7:8,883,851...8,886,310 		JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO
IEA 		(PMID:11092761), (PMID:26297558)
GO_REF:0000107 		RGD
Ensembl		 PMID:11092761 PMID:26297558 GO_REF:0000107 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
ornithine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine transcarbamylase involved_in ISO
IEA 		(PMID:2556444), (PMID:8112735)
GO_REF:0000107 		RGD
Ensembl		 PMID:2556444 PMID:8112735 GO_REF:0000107 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
ornithine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin2 antizyme inhibitor 2 acts_upstream_of_or_within ISO (PMID:16916800) RGD PMID:16916800 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397 		JBrowse link
G Otc ornithine transcarbamylase involved_in IDA
IEA 		GO_REF:0000108 GOC
RGD		 PMID:4062872 GO_REF:0000108, RGD:2300098 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
G Slc25a2 solute carrier family 25 member 2 involved_in ISO (PMID:12948741) RGD PMID:12948741 NCBI chr18:29,452,943...29,456,324
Ensembl chr18:29,453,582...29,460,383 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
peptidyl-proline hydroxylation to 3-hydroxy-L-proline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crtap cartilage associated protein acts_upstream_of_or_within ISO MGI:3693334 (PMID:17055431) RGD PMID:17055431 NCBI chr 8:114,047,929...114,067,636
Ensembl chr 8:114,047,933...114,067,631 		JBrowse link
peptidyl-proline hydroxylation to 4-hydroxy-L-proline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egln2 egl-9 family hypoxia-inducible factor 2 involved_in IDA
ISO 		PMID:15925519
(PMID:12039559) 		RGD PMID:12039559 PMID:15925519 RGD:13602003 NCBI chr 1:82,451,554...82,459,809
Ensembl chr 1:82,451,555...82,459,751 		JBrowse link
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha acts_upstream_of_or_within ISO MGI:1859815|MGI:1914725 (PMID:22981861) RGD PMID:22981861 NCBI chr15:18,495,037...18,530,440
Ensembl chr15:18,492,945...18,530,478 		JBrowse link
G Ero1b endoplasmic reticulum oxidoreductase 1 beta acts_upstream_of_or_within ISO MGI:1354385|MGI:1859815 (PMID:22981861) RGD PMID:22981861 NCBI chr17:85,861,086...86,003,244
Ensembl chr17:85,929,618...86,003,398 		JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 acts_upstream_of_or_within TAS
ISO 		(PMID:7753822) RGD PMID:7753822 PMID:11997102 RGD:625562 NCBI chr20:27,784,696...27,895,785
Ensembl chr20:27,302,141...27,352,786 		JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 acts_upstream_of_or_within ISO (PMID:7753822) RGD PMID:7753822 NCBI chr10:38,243,136...38,271,983
Ensembl chr10:38,243,139...38,287,314 		JBrowse link
G P4hb prolyl 4-hydroxylase subunit beta acts_upstream_of_or_within ISO (PMID:7753822) RGD PMID:7753822 NCBI chr10:105,836,972...105,848,583
Ensembl chr10:105,836,982...105,848,500 		JBrowse link
G Prdx4 peroxiredoxin 4 acts_upstream_of_or_within ISO MGI:1354385|MGI:1914725 (PMID:22981861) RGD PMID:22981861 NCBI chr  X:40,026,762...40,044,066
Ensembl chr  X:40,026,651...40,044,066 		JBrowse link
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:21757002) 		Ensembl
RGD		 PMID:21757002 GO_REF:0000107 NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
positive regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 involved_in ISO
IEA 		(PMID:21757002)
GO_REF:0000107 		RGD
Ensembl		 PMID:21757002 GO_REF:0000107 NCBI chr 7:25,733,471...25,829,440
Ensembl chr 7:23,846,122...23,942,047 		JBrowse link
positive regulation of homocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase IMP RGD PMID:15779086 RGD:2289784 NCBI chr11:96,072,371...96,091,956
Ensembl chr11:82,568,025...82,587,642 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase acts_upstream_of ISS
ISO 		GO_REF:0000024
(PMID:16731528) 		ParkinsonsUK-UCL
RGD		 PMID:16731528 GO_REF:0000024 NCBI chr 5:166,636,551...166,659,825
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO
IEA 		(PMID:11092761), (PMID:26297558)
GO_REF:0000043
GO_REF:0000002
GO_REF:0000107 		RGD
UniProt
InterPro
Ensembl		 PMID:11092761 PMID:26297558 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in IEA GO_REF:0000002
GO_REF:0000043 		InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in ISO
IEA 		(PMID:16730026)
GO_REF:0000002
GO_REF:0000043 		RGD
InterPro
UniProt		 PMID:16730026 GO_REF:0000002 GO_REF:0000043 NCBI chr10:105,917,732...105,922,658
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
GO_REF:0000002
GO_REF:0000043
(PMID:23024808) 		UniProt
Ensembl
InterPro
RGD		 PMID:23024808 GO_REF:0000002 GO_REF:0000024 GO_REF:0000043 GO_REF:0000107 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:107,603,543...107,608,831
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
proline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase involved_in ISO
IEA
IBA 		(PMID:16616139)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:16616139 GO_REF:0000033 GO_REF:0000107 NCBI chr12:42,592,342...42,613,046
Ensembl chr12:42,592,343...42,612,741 		JBrowse link
G Prodh proline dehydrogenase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:82,910,043...82,927,305
Ensembl chr11:82,910,137...82,927,305 		JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:85,753,558...85,767,165
Ensembl chr 1:85,753,644...85,767,162 		JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family, member A1 involved_in IEA GO_REF:0000041
GO_REF:0000002
GO_REF:0000104 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 5:151,880,002...151,905,491
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
G Iffo2 intermediate filament family orphan 2 involved_in IEA GO_REF:0000041
GO_REF:0000002
GO_REF:0000104 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 5:151,830,900...151,876,948
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
G Prodh proline dehydrogenase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:82,910,043...82,927,305
Ensembl chr11:82,910,137...82,927,305 		JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,753,558...85,767,165
Ensembl chr 1:85,753,644...85,767,162 		JBrowse link
G Tas1r2 taste 1 receptor member 2 involved_in IEA GO_REF:0000041
GO_REF:0000002
GO_REF:0000104 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 5:157,192,799...157,208,937
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
proline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh4a1 aldehyde dehydrogenase 4 family, member A1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:151,880,002...151,905,491
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
G Iffo2 intermediate filament family orphan 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:151,830,900...151,876,948
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
G Prodh proline dehydrogenase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:82,910,043...82,927,305
Ensembl chr11:82,910,137...82,927,305 		JBrowse link
G Prodh2 proline dehydrogenase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:85,753,558...85,767,165
Ensembl chr 1:85,753,644...85,767,162 		JBrowse link
G Tas1r2 taste 1 receptor member 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:157,192,799...157,208,937
Ensembl chr 5:151,830,701...151,925,345 		JBrowse link
putrescine biosynthetic process from arginine, via agmatine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:154,043,665...154,074,278
Ensembl chr 5:154,060,151...154,074,276 		JBrowse link
putrescine biosynthetic process from arginine, via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Azin1 antizyme inhibitor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:71,539,711...71,566,515
Ensembl chr 7:69,654,663...69,681,578 		JBrowse link
G Azin2 antizyme inhibitor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:141,281,310...141,310,415
Ensembl chr 5:141,281,249...141,310,397 		JBrowse link
G Ldc1 leucine decarboxylase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:142,551,120...142,563,217
Ensembl chr 5:142,552,008...142,563,074 		JBrowse link
G Odc1 ornithine decarboxylase 1 involved_in ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:24967154)
GO_REF:0000033
GO_REF:0000041 		UniProt
Ensembl
RGD
GO_Central		 PMID:24967154 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr 6:40,329,831...40,336,444
Ensembl chr 6:40,329,964...40,336,440 		JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:19284480)
GO_REF:0000107 		RGD
Ensembl		 PMID:19284480 GO_REF:0000107 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
regulation of arginine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase involved_in ISS
ISO 		GO_REF:0000024
(PMID:23643539) 		UniProt
RGD		 PMID:23643539 GO_REF:0000024 NCBI chr13:90,056,565...90,082,450
Ensembl chr13:87,524,337...87,550,266 		JBrowse link
G Slc7a7 solute carrier family 7 member 7 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:3530880 (PMID:17376816) 		GO_Central
Ensembl
RGD		 PMID:17376816 GO_REF:0000033 GO_REF:0000107 NCBI chr15:31,792,122...31,852,732
Ensembl chr15:27,822,091...27,865,648 		JBrowse link
regulation of cysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:3608695 (PMID:17200146) RGD PMID:17200146 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
regulation of glutamate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway IDA RGD PMID:19858196 RGD:6484536 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:3608695 (PMID:21490221), (PMID:24548853), (PMID:25429150) RGD PMID:21490221 PMID:24548853 PMID:25429150 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt4 sirtuin 4 involved_in ISO
IEA 		(PMID:23562301)
GO_REF:0000107 		RGD
Ensembl		 PMID:23562301 GO_REF:0000107 NCBI chr12:41,125,533...41,139,440
Ensembl chr12:41,131,262...41,139,439 		JBrowse link
regulation of ornithine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf4a hepatocyte nuclear factor 4, alpha involved_in IEA
ISO 		GO_REF:0000107
(PMID:17827783) 		Ensembl
RGD		 PMID:17827783 GO_REF:0000107 NCBI chr 3:172,606,220...172,667,758
Ensembl chr 3:152,186,787...152,248,320 		JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase IDA RGD PMID:11741948 RGD:730275 NCBI chr 3:143,569,134...143,584,359
Ensembl chr 3:143,569,094...143,584,393 		JBrowse link
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Comt catechol-O-methyltransferase TAS RGD PMID:12584150 RGD:1359089 NCBI chr11:96,072,371...96,091,956
Ensembl chr11:82,568,025...82,587,642 		JBrowse link
G Gamt guanidinoacetate N-methyltransferase IDA RGD PMID:15533043 RGD:1359081 NCBI chr 7:9,448,590...9,451,413
Ensembl chr 7:9,448,628...9,451,778 		JBrowse link
G Gnmt glycine N-methyltransferase involved_in IDA
IBA
IMP 		GO_REF:0000033
PMID:10756111 		GO_Central
RGD		 PMID:15347642 PMID:10756111 GO_REF:0000033, RGD:1359070, RGD:12793006 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase IMP RGD PMID:9192075 RGD:2289655 NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128 		JBrowse link
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 IDA RGD PMID:8263531 RGD:729481 NCBI chr 1:2,111,756...2,160,354
Ensembl chr 1:2,111,763...2,159,201 		JBrowse link
G Pemt phosphatidylethanolamine N-methyltransferase IDA RGD PMID:8344945 RGD:729486 NCBI chr10:45,275,434...45,349,651
Ensembl chr10:44,775,911...44,850,013 		JBrowse link
G Pnmt phenylethanolamine-N-methyltransferase TAS RGD PMID:12438084 RGD:1359087 NCBI chr10:83,383,019...83,386,557
Ensembl chr10:83,384,923...83,386,556 		JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sardh sarcosine dehydrogenase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874 		JBrowse link
sarcosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnmt glycine N-methyltransferase involved_in IMP
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:18501206 GO_REF:0000033, RGD:7242952 NCBI chr 9:14,254,675...14,258,028
Ensembl chr 9:14,254,675...14,258,434 		JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sephs1 selenophosphate synthetase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,354,435...73,382,803
Ensembl chr17:73,356,530...73,382,593 		JBrowse link
G Sephs2 selenophosphate synthetase 2 acts_upstream_of_or_within ISO (PMID:17346238) RGD PMID:17346238 NCBI chr 1:181,893,146...181,895,464
Ensembl chr 1:181,892,599...181,895,497 		JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase involved_in IMP PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:91,890,269...91,910,947
Ensembl chr 9:91,890,306...91,910,941 		JBrowse link
selenocysteine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Txnrd1 thioredoxin reductase 1 IMP RGD PMID:10512699 RGD:634379 NCBI chr 7:22,717,620...22,802,553
Ensembl chr 7:20,830,045...20,907,863 		JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 involved_in IBA
ISO 		GO_REF:0000033
(PMID:17034760) 		GO_Central
RGD		 PMID:17034760 GO_REF:0000033 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017 		JBrowse link
serine family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:23190757) RGD PMID:23190757 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Srr serine racemase acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:115,762,662...115,771,832
Ensembl chr 7:113,881,618...113,891,759 		JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344 		JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 NOT|acts_upstream_of_or_within ISO (PMID:17034760) RGD PMID:17034760 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:112,475,572...112,481,920
Ensembl chr 7:110,595,091...110,601,473 		JBrowse link
G Tdh L-threonine dehydrogenase involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:26492815)
(PMID:21896756) 		GO_Central
Ensembl
RGD		 PMID:21896756 PMID:26492815 GO_REF:0000033 GO_REF:0000107 NCBI chr15:37,739,823...37,753,365
Ensembl chr15:37,739,823...37,753,365 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:103,094,681...103,100,169
Ensembl chr10:103,094,681...103,100,519 		JBrowse link
threonine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
transsulfuration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase IDA RGD PMID:16636197 RGD:1600624 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cth cystathionine gamma-lyase involved_in TAS
IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
GO_REF:0000002
(PMID:19428278) 		GO_Central
Ensembl
InterPro
RGD		 PMID:19428278 PMID:15347670 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:1600762 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
G Mpst mercaptopyruvate sulfurtransferase IDA RGD PMID:17130129 RGD:9685559 NCBI chr 7:111,836,079...111,843,651
Ensembl chr 7:109,955,675...109,963,141 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO (PMID:23190757) RGD PMID:23190757 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase involved_in IDA
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:16953590 GO_REF:0000033, RGD:1601531 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase involved_in IDA
IEA 		GO_REF:0000108 GOC
RGD		 PMID:10839989 GO_REF:0000108, RGD:1601535 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:29,573,362...29,587,181
Ensembl chr20:28,953,864...29,044,292
Ensembl chr20:28,953,864...29,044,292 		JBrowse link
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:8,850,349...8,902,420
Ensembl chr17:8,845,084...8,910,539 		JBrowse link
G Txndc15 thioredoxin domain containing 15 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:8,903,248...8,915,714
Ensembl chr17:8,845,084...8,910,539
Ensembl chr 7:8,845,084...8,910,539 		JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fah fumarylacetoacetate hydrolase involved_in IEA
IBA 		GO_REF:0000104
GO_REF:0000043
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000104 NCBI chr 1:147,957,931...147,980,708
Ensembl chr 1:138,548,834...138,571,505 		JBrowse link
G Gstz1 glutathione S-transferase zeta 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:112,525,576...112,536,228
Ensembl chr 6:106,794,074...106,805,284 		JBrowse link
G Hpd 4-hydroxyphenylpyruvate dioxygenase involved_in
acts_upstream_of_or_within 		TAS
IEA
IBA
ISO
IDA 		GO_REF:0000043
GO_REF:0000033
(PMID:31537781)
PMID:8814303 		UniProt
GO_Central
RGD		 PMID:31537781 PMID:12867153 PMID:8814303 GO_REF:0000033 GO_REF:0000043, RGD:632936, RGD:8554707 NCBI chr12:33,381,397...33,392,750
Ensembl chr12:33,381,231...33,392,766 		JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in ISO (PMID:17356132) RGD PMID:17356132 NCBI chr 1:104,435,540...104,461,049
Ensembl chr 1:95,295,601...95,324,562 		JBrowse link
G Tat tyrosine aminotransferase involved_in ISO
IEA
IBA
ISS 		(PMID:7999802)
GO_REF:0000107
GO_REF:0000043
(PMID:21153519)
GO_REF:0000033
GO_REF:0000024 		RGD
Ensembl
UniProt
GO_Central		 PMID:7999802 PMID:21153519 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr19:37,947,153...37,957,717
Ensembl chr19:37,947,112...37,958,031 		JBrowse link
tyrosine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856102 (PMID:4147174) RGD PMID:4147174 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Hgd homogentisate 1, 2-dioxygenase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:63,086,750...63,138,325
Ensembl chr11:63,086,752...63,138,323 		JBrowse link
G Iyd iodotyrosine deiodinase involved_in ISO
IEA
IBA
ISS 		(PMID:25395621)
GO_REF:0000107
(PMID:19777994)
GO_REF:0000033
(PMID:25395621), (PMID:28157283)
GO_REF:0000024 		RGD
Ensembl
GO_Central
UniProt		 PMID:19777994 PMID:25395621 PMID:28157283 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:40,003,999...40,019,323
Ensembl chr 1:40,004,041...40,019,319 		JBrowse link
G Thap4 THAP domain containing 4 involved_in ISO
IEA
ISS 		(PMID:30524950)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:30524950 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,242,581...94,282,312
Ensembl chr 9:94,242,581...94,282,306 		JBrowse link
G Tmem25 transmembrane protein 25 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:45,107,116...45,112,657
Ensembl chr 8:45,107,121...45,116,389 		JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:5588394 (PMID:31537781)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:31537781 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:45,112,737...45,116,345 JBrowse link
valine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 involved_in IDA PMID:2768248 UniProt PMID:2768248 RGD:1599052 NCBI chr 6:109,809,092...109,829,725
Ensembl chr 6:104,077,979...104,098,656 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3028726|MGI:3772355 (PMID:14755340), (PMID:17767905)
GO_REF:0000107 		RGD
Ensembl		 PMID:14755340 PMID:17767905 GO_REF:0000107 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          amino acid metabolic process 305
            alpha-amino acid metabolic process 224
              1-aminocyclopropane-1-carboxylate metabolic process + 0
              4-hydroxyproline metabolic process + 8
              D-amino acid metabolic process + 3
              L-amino acid metabolic process + 189
              alanine metabolic process + 5
              alpha-amino acid biosynthetic process + 69
              alpha-amino acid catabolic process + 96
              arginine metabolic process + 23
              citrulline metabolic process + 8
              cysteine metabolic process + 11
              homocysteine metabolic process + 14
              isoleucine metabolic process + 6
              kynurenine metabolic process + 9
              lysine metabolic process + 5
              nicotinate nucleotide biosynthetic process from tryptophan 0
              ornithine metabolic process + 7
              sarcosine metabolic process + 2
              serine family amino acid metabolic process + 37
              serotonin biosynthetic process from tryptophan 2
              valine metabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        small molecule metabolic process 1944
          organic acid metabolic process 1062
            oxoacid metabolic process 1040
              carboxylic acid metabolic process 1025
                alpha-amino acid metabolic process 224
                  1-aminocyclopropane-1-carboxylate metabolic process + 0
                  4-hydroxyproline metabolic process + 8
                  D-amino acid metabolic process + 3
                  L-amino acid metabolic process + 189
                  alanine metabolic process + 5
                  alpha-amino acid biosynthetic process + 69
                  alpha-amino acid catabolic process + 96
                  arginine metabolic process + 23
                  citrulline metabolic process + 8
                  cysteine metabolic process + 11
                  homocysteine metabolic process + 14
                  isoleucine metabolic process + 6
                  kynurenine metabolic process + 9
                  lysine metabolic process + 5
                  nicotinate nucleotide biosynthetic process from tryptophan 0
                  ornithine metabolic process + 7
                  sarcosine metabolic process + 2
                  serine family amino acid metabolic process + 37
                  serotonin biosynthetic process from tryptophan 2
                  valine metabolic process + 7
paths to the root