Sardh (sarcosine dehydrogenase) - Rat Genome Database

Name: Sardh
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Sardh (sarcosine dehydrogenase) Rattus norvegicus

Analyze

Symbol:

Sardh

Name:

sarcosine dehydrogenase

RGD ID:

621125

Description:

Enables flavin adenine dinucleotide binding activity; folic acid binding activity; and sarcosine dehydrogenase activity. Involved in tetrahydrofolate interconversion. Located in mitochondrial matrix. Human ortholog(s) of this gene implicated in sarcosinemia. Orthologous to human SARDH (sarcosine dehydrogenase); PARTICIPATES IN choline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC366279; sarcosine dehydrogenase, mitochondrial; similar to sarcosine dehydrogenase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SARDH (sarcosine dehydrogenase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sardh (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sardh (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SARDH (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SARDH (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sardh (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SARDH (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SARDH (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sardh (sarcosine dehydrogenase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Sardh (sarcosine dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SARDH (sarcosine dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sardh (sarcosine dehydrogenase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sardh	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	10,510,553 - 10,575,342 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,510,553 - 10,573,874 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	13,577,541 - 13,639,718 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	22,162,940 - 22,225,121 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	20,418,235 - 20,480,397 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	5,737,203 - 5,802,153 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,737,200 - 5,802,129 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	6,076,166 - 6,142,565 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	6,076,465 - 6,142,865 (-)	NCBI
Celera	3	5,308,395 - 5,369,033 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome classic type 1 (ISO)

hepatocellular carcinoma (ISO)

Hypoxia (ISO)

sarcosinemia (ISO)

tuberous sclerosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (EXP)

chromium(6+) (ISO)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

dextran sulfate (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fenamidone (ISO)

fipronil (EXP)

formaldehyde (ISO)

fumonisin B1 (ISO)

furan (EXP)

glyphosate (EXP)

imidacloprid (EXP)

iodide salt (EXP)

methapyrilene (EXP,ISO)

N-nitrosomorpholine (EXP)

N-Nitrosopyrrolidine (ISO)

nefazodone (EXP)

nimesulide (EXP)

O-methyleugenol (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

pirinixic acid (EXP,ISO)

progesterone (EXP)

propanal (ISO)

resveratrol (ISO)

rotenone (EXP)

selenium atom (ISO)

sodium arsenite (EXP,ISO)

Soman (EXP)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

tetracycline (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

trimellitic anhydride (ISO)

troglitazone (ISO)

urethane (ISO)

valdecoxib (EXP)

vancomycin (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline catabolic process (NAS,TAS)

glycine biosynthetic process (TAS)

sarcosine catabolic process (IBA)

tetrahydrofolate interconversion (IDA)

Cellular Component

cytoplasm (IBA)

mitochondrial matrix (IBA,IDA)

mitochondrion (IBA,IDA,IEA,ISO,ISS)

Molecular Function

flavin adenine dinucleotide binding (IDA)

folic acid binding (IDA)

oxidoreductase activity (IBA,IEA,NAS)

sarcosine dehydrogenase activity (IBA,IDA,TAS)

Molecular Pathway Annotations Click to see Annotation Detail View

choline metabolic pathway (IDA)

dihydropyrimidine dehydrogenase deficiency pathway (ISO)

dimethylglycine dehydrogenase deficiency pathway (ISO)

folate cycle metabolic pathway (ISO)

glycine, serine and threonine metabolic pathway (IEA)

nonketotic hyperglycinemia pathway (ISO)

sarcosinemia pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning and tissue distribution of rat sarcosine dehydrogenase.	Bergeron F, etal., Eur J Biochem 1998 Nov 1;257(3):556-61.
2.	Significant Down-Regulation of Urea Cycle Generates Clinically Relevant Proteomic Signature in Hepatocellular Carcinoma Patients with Macrovascular Invasion.	Cao Y, etal., J Proteome Res. 2019 May 3;18(5):2032-2044. doi: 10.1021/acs.jproteome.8b00921. Epub 2019 Mar 29.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Compartmentalization of Mammalian folate-mediated one-carbon metabolism.	Tibbetts AS and Appling DR, Annu Rev Nutr. 2010 Aug 21;30:57-81. doi: 10.1146/annurev.nutr.012809.104810.
13.	Identification of the folate-binding proteins of rat liver mitochondria as dimethylglycine dehydrogenase and sarcosine dehydrogenase. Flavoprotein nature and enzymatic properties of the purified proteins.	Wittwer AJ and Wagner C, J Biol Chem. 1981 Apr 25;256(8):4109-15.

Additional References at PubMed

PMID:4055729	PMID:14651853	PMID:18614015

Genomics

Comparative Map Data

Sardh
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	10,510,553 - 10,575,342 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	10,510,553 - 10,573,874 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	13,577,541 - 13,639,718 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	22,162,940 - 22,225,121 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	20,418,235 - 20,480,397 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	5,737,203 - 5,802,153 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	5,737,200 - 5,802,129 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	6,076,166 - 6,142,565 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	6,076,465 - 6,142,865 (-)	NCBI
Celera	3	5,308,395 - 5,369,033 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

SARDH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	133,659,418 - 133,739,955 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	133,663,560 - 133,739,955 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	136,528,682 - 136,605,077 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	135,518,503 - 135,594,863 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	133,558,235 - 133,634,596	NCBI
Celera	9	107,075,562 - 107,151,924 (-)	NCBI		Celera
Cytogenetic Map	9	q34.2	NCBI
HuRef	9	106,029,059 - 106,104,804 (-)	NCBI		HuRef
CHM1_1	9	136,678,641 - 136,754,578 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	145,879,578 - 145,955,389 (-)	NCBI		T2T-CHM13v2.0

Sardh
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	27,078,405 - 27,138,344 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	27,078,405 - 27,138,349 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	27,188,393 - 27,248,332 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	27,188,393 - 27,248,337 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	27,044,902 - 27,102,332 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	27,011,391 - 27,068,821 (-)	NCBI		MGSCv36	mm8
Celera	2	26,892,296 - 26,949,897 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI

Sardh
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	2,933,918 - 2,976,931 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	2,933,918 - 2,975,645 (-)	NCBI	ChiLan1.0	ChiLan1.0

SARDH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	133,398,806 - 133,473,642 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	133,398,806 - 133,473,642 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	104,786,774 - 104,864,480 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SARDH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	50,030,397 - 50,093,556 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	50,030,707 - 50,091,553 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	49,310,923 - 49,374,527 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	50,904,459 - 50,967,629 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	50,904,464 - 50,967,596 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	49,665,765 - 49,728,991 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	50,007,753 - 50,071,562 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	50,086,168 - 50,149,420 (-)	NCBI		UU_Cfam_GSD_1.0

Sardh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	200,077,144 - 200,131,802 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	3,243,762 - 3,297,905 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936669	3,244,302 - 3,297,906 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SARDH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	273,230,375 - 273,294,621 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	273,230,357 - 273,295,170 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	307,204,192 - 307,268,081 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SARDH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	4,397,312 - 4,469,890 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	4,397,539 - 4,469,562 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	519,221 - 596,979 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sardh
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	2,032,326 - 2,066,584 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	2,030,835 - 2,070,517 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Sardh
222 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	87
Count of miRNA genes:	71
Interacting mature miRNAs:	76
Transcripts:	ENSRNOT00000009555
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6537645	10778823	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat

Markers in Region

D3Mgh17

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,549,351 - 10,549,499 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,775,856 - 5,776,005	NCBI	Rnor6.0
Rnor_5.0	3	11,139,240 - 11,139,389	UniSTS	Rnor5.0
Celera	3	5,345,934 - 5,346,083	UniSTS
RH 3.4 Map	3	21.9	RGD
RH 3.4 Map	3	21.9	UniSTS
Cytogenetic Map	3	p12	UniSTS

RH129217

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,510,597 - 10,510,789 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,737,248 - 5,737,439	NCBI	Rnor6.0
Rnor_5.0	3	11,100,716 - 11,100,907	UniSTS	Rnor5.0
RGSC_v3.4	3	6,075,178 - 6,075,369	UniSTS	RGSC3.4
Celera	3	5,307,407 - 5,307,598	UniSTS
Cytogenetic Map	3	p12	UniSTS

RH129462

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,510,611 - 10,510,820 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,737,262 - 5,737,470	NCBI	Rnor6.0
Rnor_5.0	3	11,100,730 - 11,100,938	UniSTS	Rnor5.0
RGSC_v3.4	3	6,075,192 - 6,075,400	UniSTS	RGSC3.4
Celera	3	5,307,421 - 5,307,629	UniSTS
Cytogenetic Map	3	p12	UniSTS

BE097994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	10,541,407 - 10,541,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	5,768,098 - 5,768,252	NCBI	Rnor6.0
Rnor_5.0	3	11,131,482 - 11,131,636	UniSTS	Rnor5.0
RGSC_v3.4	3	6,105,948 - 6,106,102	UniSTS	RGSC3.4
Celera	3	5,337,989 - 5,338,143	UniSTS
RH 3.4 Map	3	14.0	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		41	49	41	1	41			7	35	34	11
Low	3	2	8		18		8	11	67		7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF067650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L79910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U62481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009555 ⟹ ENSRNOP00000009555

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	10,510,553 - 10,573,874 (-)	Ensembl
Rnor_6.0 Ensembl	3	5,737,200 - 5,802,129 (-)	Ensembl

RefSeq Acc Id:

NM_053664 ⟹ NP_446116

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	10,511,586 - 10,573,573 (-)	NCBI
Rnor_6.0	3	5,738,236 - 5,800,388 (-)	NCBI
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI
RGSC_v3.4	3	6,076,166 - 6,142,565 (-)	RGD
Celera	3	5,308,395 - 5,369,033 (-)	RGD

Sequence:

show sequence

CTGAGGTAGAGGCACTGCCTGGACTTGCAGAACCTCGATTGGGTCCATATCATGCTGACTTTTC
CTTGCTAGGAATCTCCCAGGAGCTTCTGGAAAATCTAGGACGAAGACTAAGGTACAGGAGCCCT
AAGTCCCCATGGCTTCACTGAGCCGGGTCCTCCGTGTAGCTGCCACCTGTCCTCGAGGGAGATC
TGCTCGCAACCTGGGGCTACAGCCCCTAGCCAGGGAGGCCAGGCCCACCACTGAGAAGAGTGTT
CCATACCAGTGCACCCTGAAGGAGGAGGCCCAAGGTGCCTCTGTGGTGCCCCAAGGACCAAGCC
AGCCCCTGCCTAGCACAGCCAATGTTGTGGTCATTGGTGGGGGCAGTTTGGGCTGCCAGACTCT
GTACCACTTGGCCAAGCTGGGTGTAGGTGGAGTTGTGCTGCTGGAGAGAGAGCGACTGACCTCT
GGGACCACCTGGCACACAGCAGGCCTACTGTGGCAGCTGCGGCCCAGCGATGTGGAAGTAGAGC
TTCTGGCTCACACACGGCAAGTGGTGAGCCATGATCTGGAAGAGGAGACTGGGCTTCACACAGG
CTGGATCCAGAATGGTGGCCTCTTCATCGCCTCCAACCAGCAGCGCCTGGATGAATACAAGAGG
CTCATGTCGTTGGGCAAGGCCTACGGTATAGAATCCCATGTGCTGAGCCCTGCAGAGACCAAGG
ATCTGTATCCGCTGATGAATGTGGACGACCTCTATGGGACCCTGTATGTGCCTCGGGATGGTAC
CATGGACCCGGCTGGCACCTGCACTACCCTCACCAGAGCAGCAGTGGCTAGGGGAGCTCAGGTC
ATTGAAAACTGTGCAGTGACTGGCATCCGTGTGCGGACAGACGACTTTGGAGTGCGGCGGGTGA
CAGCTGTGGAGACTCAACATGGCTCCATCCAGACACCCTGCGTGGTCAACTGTGCAGGGGTGTG
GGCGAGCTCCGTGGGCCGGATGGCTGGAGTGAAGGTCCCGCTGGTGGCCATGCACCATGCCTAC
GTTGTCACTGAGCGCATTGAGGGGATCCAGAACATGCCCAATGTCCGGGATCATGATGCTTCTG
TCTACCTCCGCCTGCAGGGGGATGCCTTGTCTGTGGGTGGCTATGAGGCCAACCCCATCTTTTG
GGATGAGGTGTCAGACAAATTTGCCTTTGGCCTCTTTGACCTGGACTGGGATGTGTTCACTCAG
CACATTGAAGGTGCCATTAACCGTGTCCCCGTGTTGGAGAAAACGGGGATCAAGTCCACTGTCT
GTGGCCCTGAATCCTTCACACCCGACCATAAGCCCCTGATGGGGGAGGCTCCTGAGCTCCGAGG
CTTCTTCCTTGGCTGTGGCTTCAACAGTGCAGGCATGATGTTGGGTGGTGGCTGTGGACAGGAG
CTGGCCCATTGGATTGTGCATGGGCGCCCAGAGAAGGACATGTACAGCTATGACATCAGGCGTT
TCCACCACTCGCTCACGGACCACCCACGCTGGATCCGAGAGCGCAGCCACGAGTCCTATGCCAA
GAACTACTCGGTTGTCTTTCCTCACGATGAGCCCCTGGCGGGCCGCAACATGAGGAGGGACCCT
CTGCACGAGGAGCTGCTTGGACAAGGCTGTGTGTTTCAAGAACGACAGGGCTGGGAACGGCCAG
GATGGTTCAACCCCCAAGAAACAGCTCAGGTCCTAGACTACGACTACTATGGGGCCTACGGACA
CCAGGCACACAAGGACTACGCCTACAGCAGGCTGCTGGGCGATGAATATACCTTCGACTTCCCA
CCCCACCACTGCGTGATCCAGAAGGAATGTCTGGCCTGCAGAACGGCTGCCGCCGTGTTCAACA
TGTCTTACTTCGGGAAGTTCTACCTTCTGGGGGCAGACGCCAGGAAGGCTCCAGACTGGCTCTT
CTCAGCAGATGTCAACCGACCCCCAGGCTCCACGGTGTACACATGCATGCTGAACCAACGGGGA
GGCACCGAGAGCGACCTGACTGTTAGCTGCCTGGCCCCTGGTGCCCAGGCCAGTCCCCTGGCCC
CTGCCTTTGAAGGGGATGGCTACTACCTAGCCGTAGGTGGGGCTGTGGCCCAACATAACTGGTC
CCACATAAACACGGTGCTGCAGGATCAGGAGTTCCGGTGCCAGCTTATGGATTGTTCTGAAGAT
CTGGGCATGCTCAGTATCCAGGGCCCAGCCAGCCGTGACATTCTCCAGGATGTGCTTGATGCTG
ACCTGAGCAATGAAGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCTGCTGGACACCTGGT
CCGAGCCATCCGGCTATCCTTTGTCGGGGAGCTGGGATGGGAGCTGCATGTGCCCCAAGCGTCC
TGCTTGCCTGTGTACCGGGCTGTGATGGCTGCAGGGGCGAAGCACGGCCTAGTCAATGCAGGCT
ACCGTGCCATCGACTCCCTGAGCATTGAGAAAGGCTATCGGCACTGGCATGCAGACCTGAGGTC
CGATGACAGCCCCCTGGAGGCAGGGTTGGCCTTCACCTGCAAGCTCAAGACCTCAGTGCCCTTC
CTAGGCCGAGAGGCCCTGGAGAAGCAGCGTGCCACAGGCCTCCGACGACGCCTGGTGTGCCTCA
CTGTGGAAGAGGAGGTTCCTATGTTCGGCCTAGAGGCCATCTGGAGAAATGGCCAAGTGGTGGG
CCATGTCCGGAGAGCTGACTTTGGATTCACCGTGAACAAGACCATCGCCTATGGCTACATCCGA
GACCCCAGTGGAGGGCCAGTCTCTCTGGACTTTGTGAAGAATGGGGACTATGCCTTGGAGAGAA
TGGGGGTCACCTATGCTGCCCAGGTTCACCTGAAGTCTCCCTTTGATCCTGACAACAAGCGGGT
GAAGGGAATCTATTGATGGGCTGCAGGGTGGAGGCTACAGCTGCTCAGGCCCCTGGAAACTGCC
ACACTTCCCATACGGCCTGTGGACTCCTATACTGTACAAACAGCCCTGTGTCCTGAGACCCAAG
ATAAGGGCAAAACACAGACTTCCCACCCTGAGCCTCCATCTGGTCCTGCTAACTGCCACAG

hide sequence

RefSeq Acc Id:

XM_006233731 ⟹ XP_006233793

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	10,510,553 - 10,574,149 (-)	NCBI
Rnor_6.0	3	5,737,203 - 5,800,956 (-)	NCBI
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI

Sequence:

show sequence

GACCAGCAGCAAGGGAGTGGGTGGCCTTTTCAGTTAGACCCAGATGCAGCTTGGGAAACAAGGG
AGGGGCAGTGTCCTGACAGCCCCTTCATGGGCAGGAATCTCCCAGGAGCTTCTGGAAAATCTAG
GACGAAGACTAAGGTACAGGAGCCCTAAGTCCCCATGGCTTCACTGAGCCGGGTCCTCCGTGTA
GCTGCCACCTGTCCTCGAGGGAGATCTGCTCGCAACCTGGGGCTACAGCCCCTAGCCAGGGAGG
CCAGGCCCACCACTGAGAAGAGTGTTCCATACCAGTGCACCCTGAAGGAGGAGGCCCAAGGTGC
CTCTGTGGTGCCCCAAGGACCAAGCCAGCCCCTGCCTAGCACAGCCAATGTTGTGGTCATTGGT
GGGGGCAGTTTGGGCTGCCAGACTCTGTACCACTTGGCCAAGCTGGGTGTAGGTGGAGTTGTGC
TGCTGGAGAGAGAGCGACTGACCTCTGGGACCACCTGGCACACAGCAGGCCTACTGTGGCAGCT
GCGGCCCAGCGATGTGGAAGTAGAGCTTCTGGCTCACACACGGCAAGTGGTGAGCCATGATCTG
GAAGAGGAGACTGGGCTTCACACAGGCTGGATCCAGAATGGTGGCCTCTTCATCGCCTCCAACC
AGCAGCGCCTGGATGAATACAAGAGGCTCATGTCGTTGGGCAAGGCCTACGGTATAGAATCCCA
TGTGCTGAGCCCTGCAGAGACCAAGGATCTGTATCCGCTGATGAATGTGGACGACCTCTATGGG
ACCCTGTATGTGCCTCGGGATGGTACCATGGACCCGGCTGGCACCTGCACTACCCTCACCAGAG
CAGCAGTGGCTAGGGGAGCTCAGGTCATTGAAAACTGTGCAGTGACTGGCATCCGTGTGCGGAC
AGACGACTTTGGAGTGCGGCGGGTGACAGCTGTGGAGACTCAACATGGCTCCATCCAGACACCC
TGCGTGGTCAACTGTGCAGGGGTGTGGGCGAGCTCCGTGGGCCGGATGGCTGGAGTGAAGGTCC
CGCTGGTGGCCATGCACCATGCCTACGTTGTCACTGAGCGCATTGAGGGGATCCAGAACATGCC
CAATGTCCGGGATCATGATGCTTCTGTCTACCTCCGCCTGCAGGGGGATGCCTTGTCTGTGGGT
GGCTATGAGGCCAACCCCATCTTTTGGGATGAGGTGTCAGACAAATTTGCCTTTGGCCTCTTTG
ACCTGGACTGGGATGTGTTCACTCAGCACATTGAAGGTGCCATTAACCGTGTCCCCGTGTTGGA
GAAAACGGGGATCAAGTCCACTGTCTGTGGCCCTGAATCCTTCACACCCGACCATAAGCCCCTG
ATGGGGGAGGCTCCTGAGCTCCGAGGCTTCTTCCTTGGCTGTGGCTTCAACAGTGCAGGCATGA
TGTTGGGTGGTGGCTGTGGACAGGAGCTGGCCCATTGGATTGTGCATGGGCGCCCAGAGAAGGA
CATGTACAGCTATGACATCAGGCGTTTCCACCACTCGCTCACGGACCACCCACGCTGGATCCGA
GAGCGCAGCCACGAGTCCTATGCCAAGAACTACTCGGTTGTCTTTCCTCACGATGAGCCCCTGG
CGGGCCGCAACATGAGGAGGGACCCTCTGCACGAGGAGCTGCTTGGACAAGGCTGTGTGTTTCA
AGAACGACAGGGCTGGGAACGGCCAGGATGGTTCAACCCCCAAGAAACAGCTCAGGTCCTAGAC
TACGACTACTATGGGGCCTACGGACACCAGGCACACAAGGACTACGCCTACAGCAGGCTGCTGG
GCGATGAATATACCTTCGACTTCCCACCCCACCACTGCGTGATCCAGAAGGAATGTCTGGCCTG
CAGAACGGCTGCCGCCGTGTTCAACATGTCTTACTTCGGGAAGTTCTACCTTCTGGGGGCAGAC
GCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAGGCTCCACGGTGT
ACACATGCATGCTGAACCAACGGGGAGGCACCGAGAGCGACCTGACTGTTAGCTGCCTGGCCCC
TGGTGCCCAGGCCAGTCCCCTGGCCCCTGCCTTTGAAGGGGATGGCTACTACCTAGCCGTAGGT
GGGGCTGTGGCCCAACATAACTGGTCCCACATAAACACGGTGCTGCAGGATCAGGAGTTCCGGT
GCCAGCTTATGGATTGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAGCCGTGA
CATTCTCCAGGATGTGCTTGATGCTGACCTGAGCAATGAAGCCTTCCCCTTCTCCACCCACCAG
CTGGTGAGAGCTGCTGGACACCTGGTCCGAGCCATCCGGCTATCCTTTGTCGGGGAGCTGGGAT
GGGAGCTGCATGTGCCCCAAGCGTCCTGCTTGCCTGTGTACCGGGCTGTGATGGCTGCAGGGGC
GAAGCACGGCCTAGTCAATGCAGGCTACCGTGCCATCGACTCCCTGAGCATTGAGAAAGGCTAT
CGGCACTGGCATGCAGACCTGAGGTCCGATGACAGCCCCCTGGAGGCAGGGTTGGCCTTCACCT
GCAAGCTCAAGACCTCAGTGCCCTTCCTAGGCCGAGAGGCCCTGGAGAAGCAGCGTGCCACAGG
CCTCCGACGACGCCTGGTGTGCCTCACTGTGGAAGAGGAGGTTCCTATGTTCGGCCTAGAGGCC
ATCTGGAGAAATGGCCAAGTGGTGGGCCATGTCCGGAGAGCTGACTTTGGATTCACCGTGAACA
AGACCATCGCCTATGGCTACATCCGAGACCCCAGTGGAGGGCCAGTCTCTCTGGACTTTGTGAA
GAATGGGGACTATGCCTTGGAGAGAATGGGGGTCACCTATGCTGCCCAGGTTCACCTGAAGTCT
CCCTTTGATCCTGACAACAAGCGGGTGAAGGGAATCTATTGATGGGCTGCAGGGTGGAGGCTAC
AGCTGCTCAGGCCCCTGGAAACTGCCACACTTCCCATACGGCCTGTGGACTCCTATACTGTACA
AACAGCCCTGTGTCCTGAGACCCAAGATAAGGGCAAAACACAGACTTCCCACCCTGAGCCTCCA
TCTGGTCCTGCTAACTGCCACAGCTCCTAACCAGTACCACATGGACCACTATGTTCCTCCTGCT
CACAGACCACACAGTGGTCTCCAATCCACTCTAGCCCTCCCAAAATGCACCCTGCAGATGTCTG
GGCTCAAGGTCCCTGTGTATGGTTAACCCAAGATAGAAGCCATAAAGCAAGCAGGCATCCAGTC
TGTCCCTCACTTGGCTGACTGCAGTGGGTAGCTGGAGTGTCTGAAGGGTAGTGGATTGGGAGAG
TGAGCAGGGATTGATGAGTAATGTCTGCCATGGGTATAGGATGGAGGACACAGAGACAGGTGCT
GGACTGGTACAGTCCTTCTTCGGAATGGTTGCCTTTTAGACCAGAGAGAAGAAGGATAAGCAGG
CTCTTGCCCCTAGCCTTCCAGCTCTGCAGGAGAGAAAGCCTTCTGAGAGTCACCAACCAGTGAC
ACAGAAGGCATGTGGCATGGGATTTGGATCAGGAACCTCACTTACAAAGAAGTGTCATACTCTG
CCTCAGTTTCCCCTCAAGCCATTGCTCATGGGTCTGGAGACACCAAGCTTTCACTCGTGCATAA
CCCAGCTGCAGTGTATGTTTCCAAGGACTTTTTATTTCTGTCACAGATGCATGGCTTCCTGATC
AAGCTCTAGTGAGGGGCTGCTCCAGTTCTGCTTTGTGAGATAGAGTGGCCTCTTCTCCCACCCT
GTGTAACCATCCACATATGTCCTCATATCAGGGGCACCCTGCCTCTCCTTCCTGGGGTGAACAG
CCATCACTTTTCTGTAGACCCAACCTTCTTCCTCTGTCTCACGCCCTGACTGAGAAATCGGGCT
GCTGTAGCTCCCCAAACAAAGATCACCGTGTAGCCTTATGTGCCTTGTAGTCTAGGAGAGAAGG
AGGCCATTGCAGTATGGAGTTGGGTGTCTTAAACCCAAAGAAGTCAGCAGAAGGGAGATGTGGG
CACAATTGTCCTGGGTGGGCTCTGAATCTTCATAGATTCACACACCACACACTGTGCCGGAAAA
AGGTCAAGTTAATAAAATTTTACGAAACCGTT

hide sequence

RefSeq Acc Id:

XM_006233732 ⟹ XP_006233794

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	10,510,553 - 10,574,095 (-)	NCBI
Rnor_6.0	3	5,737,203 - 5,800,946 (-)	NCBI
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI

Sequence:

show sequence

AAGGGAGTGGGTGGCCTTTTCAGTTAGACCCAGATGCAGCTTGGGAAACAAGGGAGGGGCAGTG
TCCTGACAGCCCCTTCATGGGCAGGTTGGTCGCCAGCTGGGACCTCCCTCTTCTTCTGGTTGAA
GGACCATGGACTAGATGGGAAGGCCATGGATAAATGTGGGGGTGTAGGAGGGGGCTCCTTTATG
GGAGGGCTCTGCACAGTGCCTTCCCCTCTTGGGTTCCCTTCTACCCCGTTGCTGTCTTAGAAAA
CAGCCCCGTGTCTGAGGCCTCAGGCCTGTGACTGAGCTCTCATTCCCTGTGTCCTGTGCCCTGG
TCCTTGGGAAGCTGAGGGAGAGAGCTGCAGAGGCCAGAGGGCAGGTTAATGAAGCATCTGCTCT
GAAGGAGGGGCACGCTGGGGGCCTGGCTGCCCCATCCCCCACCCCTGCCCTGACTAGCTGGGCT
GGCAGAGAAGGAGCACGTGGCAGGTCCTCCAGCCAGCAGCATTGGCCTTGGGCACAGTTTGGAG
AGGAAGGAGGTTCCTCTGGCAGGAATCTCCCAGGAGCTTCTGGAAAATCTAGGACGAAGACTAA
GGTACAGGAGCCCTAAGTCCCCATGGCTTCACTGAGCCGGGTCCTCCGTGTAGCTGCCACCTGT
CCTCGAGGGAGATCTGCTCGCAACCTGGGGCTACAGCCCCTAGCCAGGGAGGCCAGGCCCACCA
CTGAGAAGAGTGTTCCATACCAGTGCACCCTGAAGGAGGAGGCCCAAGGTGCCTCTGTGGTGCC
CCAAGGACCAAGCCAGCCCCTGCCTAGCACAGCCAATGTTGTGGTCATTGGTGGGGGCAGTTTG
GGCTGCCAGACTCTGTACCACTTGGCCAAGCTGGGTGTAGGTGGAGTTGTGCTGCTGGAGAGAG
AGCGACTGACCTCTGGGACCACCTGGCACACAGCAGGCCTACTGTGGCAGCTGCGGCCCAGCGA
TGTGGAAGTAGAGCTTCTGGCTCACACACGGCAAGTGGTGAGCCATGATCTGGAAGAGGAGACT
GGGCTTCACACAGGCTGGATCCAGAATGGTGGCCTCTTCATCGCCTCCAACCAGCAGCGCCTGG
ATGAATACAAGAGGCTCATGTCGTTGGGCAAGGCCTACGGTATAGAATCCCATGTGCTGAGCCC
TGCAGAGACCAAGGATCTGTATCCGCTGATGAATGTGGACGACCTCTATGGGACCCTGTATGTG
CCTCGGGATGGTACCATGGACCCGGCTGGCACCTGCACTACCCTCACCAGAGCAGCAGTGGCTA
GGGGAGCTCAGGTCATTGAAAACTGTGCAGTGACTGGCATCCGTGTGCGGACAGACGACTTTGG
AGTGCGGCGGGTGACAGCTGTGGAGACTCAACATGGCTCCATCCAGACACCCTGCGTGGTCAAC
TGTGCAGGGGTGTGGGCGAGCTCCGTGGGCCGGATGGCTGGAGTGAAGGTCCCGCTGGTGGCCA
TGCACCATGCCTACGTTGTCACTGAGCGCATTGAGGGGATCCAGAACATGCCCAATGTCCGGGA
TCATGATGCTTCTGTCTACCTCCGCCTGCAGGGGGATGCCTTGTCTGTGGGTGGCTATGAGGCC
AACCCCATCTTTTGGGATGAGGTGTCAGACAAATTTGCCTTTGGCCTCTTTGACCTGGACTGGG
ATGTGTTCACTCAGCACATTGAAGGTGCCATTAACCGTGTCCCCGTGTTGGAGAAAACGGGGAT
CAAGTCCACTGTCTGTGGCCCTGAATCCTTCACACCCGACCATAAGCCCCTGATGGGGGAGGCT
CCTGAGCTCCGAGGCTTCTTCCTTGGCTGTGGCTTCAACAGTGCAGGCATGATGTTGGGTGGTG
GCTGTGGACAGGAGCTGGCCCATTGGATTGTGCATGGGCGCCCAGAGAAGGACATGTACAGCTA
TGACATCAGGCGTTTCCACCACTCGCTCACGGACCACCCACGCTGGATCCGAGAGCGCAGCCAC
GAGTCCTATGCCAAGAACTACTCGGTTGTCTTTCCTCACGATGAGCCCCTGGCGGGCCGCAACA
TGAGGAGGGACCCTCTGCACGAGGAGCTGCTTGGACAAGGCTGTGTGTTTCAAGAACGACAGGG
CTGGGAACGGCCAGGATGGTTCAACCCCCAAGAAACAGCTCAGGTCCTAGACTACGACTACTAT
GGGGCCTACGGACACCAGGCACACAAGGACTACGCCTACAGCAGGCTGCTGGGCGATGAATATA
CCTTCGACTTCCCACCCCACCACTGCGTGATCCAGAAGGAATGTCTGGCCTGCAGAACGGCTGC
CGCCGTGTTCAACATGTCTTACTTCGGGAAGTTCTACCTTCTGGGGGCAGACGCCAGGAAGGCT
GCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAGGCTCCACGGTGTACACATGCATGC
TGAACCAACGGGGAGGCACCGAGAGCGACCTGACTGTTAGCTGCCTGGCCCCTGGTGCCCAGGC
CAGTCCCCTGGCCCCTGCCTTTGAAGGGGATGGCTACTACCTAGCCGTAGGTGGGGCTGTGGCC
CAACATAACTGGTCCCACATAAACACGGTGCTGCAGGATCAGGAGTTCCGGTGCCAGCTTATGG
ATTGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAGCCGTGACATTCTCCAGGA
TGTGCTTGATGCTGACCTGAGCAATGAAGCCTTCCCCTTCTCCACCCACCAGCTGGTGAGAGCT
GCTGGACACCTGGTCCGAGCCATCCGGCTATCCTTTGTCGGGGAGCTGGGATGGGAGCTGCATG
TGCCCCAAGCGTCCTGCTTGCCTGTGTACCGGGCTGTGATGGCTGCAGGGGCGAAGCACGGCCT
AGTCAATGCAGGCTACCGTGCCATCGACTCCCTGAGCATTGAGAAAGGCTATCGGCACTGGCAT
GCAGACCTGAGGTCCGATGACAGCCCCCTGGAGGCAGGGTTGGCCTTCACCTGCAAGCTCAAGA
CCTCAGTGCCCTTCCTAGGCCGAGAGGCCCTGGAGAAGCAGCGTGCCACAGGCCTCCGACGACG
CCTGGTGTGCCTCACTGTGGAAGAGGAGGTTCCTATGTTCGGCCTAGAGGCCATCTGGAGAAAT
GGCCAAGTGGTGGGCCATGTCCGGAGAGCTGACTTTGGATTCACCGTGAACAAGACCATCGCCT
ATGGCTACATCCGAGACCCCAGTGGAGGGCCAGTCTCTCTGGACTTTGTGAAGAATGGGGACTA
TGCCTTGGAGAGAATGGGGGTCACCTATGCTGCCCAGGTTCACCTGAAGTCTCCCTTTGATCCT
GACAACAAGCGGGTGAAGGGAATCTATTGATGGGCTGCAGGGTGGAGGCTACAGCTGCTCAGGC
CCCTGGAAACTGCCACACTTCCCATACGGCCTGTGGACTCCTATACTGTACAAACAGCCCTGTG
TCCTGAGACCCAAGATAAGGGCAAAACACAGACTTCCCACCCTGAGCCTCCATCTGGTCCTGCT
AACTGCCACAGCTCCTAACCAGTACCACATGGACCACTATGTTCCTCCTGCTCACAGACCACAC
AGTGGTCTCCAATCCACTCTAGCCCTCCCAAAATGCACCCTGCAGATGTCTGGGCTCAAGGTCC
CTGTGTATGGTTAACCCAAGATAGAAGCCATAAAGCAAGCAGGCATCCAGTCTGTCCCTCACTT
GGCTGACTGCAGTGGGTAGCTGGAGTGTCTGAAGGGTAGTGGATTGGGAGAGTGAGCAGGGATT
GATGAGTAATGTCTGCCATGGGTATAGGATGGAGGACACAGAGACAGGTGCTGGACTGGTACAG
TCCTTCTTCGGAATGGTTGCCTTTTAGACCAGAGAGAAGAAGGATAAGCAGGCTCTTGCCCCTA
GCCTTCCAGCTCTGCAGGAGAGAAAGCCTTCTGAGAGTCACCAACCAGTGACACAGAAGGCATG
TGGCATGGGATTTGGATCAGGAACCTCACTTACAAAGAAGTGTCATACTCTGCCTCAGTTTCCC
CTCAAGCCATTGCTCATGGGTCTGGAGACACCAAGCTTTCACTCGTGCATAACCCAGCTGCAGT
GTATGTTTCCAAGGACTTTTTATTTCTGTCACAGATGCATGGCTTCCTGATCAAGCTCTAGTGA
GGGGCTGCTCCAGTTCTGCTTTGTGAGATAGAGTGGCCTCTTCTCCCACCCTGTGTAACCATCC
ACATATGTCCTCATATCAGGGGCACCCTGCCTCTCCTTCCTGGGGTGAACAGCCATCACTTTTC
TGTAGACCCAACCTTCTTCCTCTGTCTCACGCCCTGACTGAGAAATCGGGCTGCTGTAGCTCCC
CAAACAAAGATCACCGTGTAGCCTTATGTGCCTTGTAGTCTAGGAGAGAAGGAGGCCATTGCAG
TATGGAGTTGGGTGTCTTAAACCCAAAGAAGTCAGCAGAAGGGAGATGTGGGCACAATTGTCCT
GGGTGGGCTCTGAATCTTCATAGATTCACACACCACACACTGTGCCGGAAAAAGGTCAAGTTAA
TAAAATTTTACGAAACCGTT

hide sequence

RefSeq Acc Id:

XM_006233733 ⟹ XP_006233795

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	10,510,553 - 10,575,342 (-)	NCBI
Rnor_6.0	3	5,737,203 - 5,802,153 (-)	NCBI
Rnor_5.0	3	11,100,670 - 11,164,367 (-)	NCBI

Sequence:

show sequence

TATTAACCAGGTGTCTTTCCGTCACGCACCACAGAGGCTGGGACTCAGAGGAAGACTTAGGCAA
TGTGTTTATCCCCTTCTCTCTAATCCGCTTGTCAGTCTGGAATCTCCCAGGAGCTTCTGGAAAA
TCTAGGACGAAGACTAAGGTACAGGAGCCCTAAGTCCCCATGGCTTCACTGAGCCGGGTCCTCC
GTGTAGCTGCCACCTGTCCTCGAGGGAGATCTGCTCGCAACCTGGGGCTACAGCCCCTAGCCAG
GGAGGCCAGGCCCACCACTGAGAAGAGTGTTCCATACCAGTGCACCCTGAAGGAGGAGGCCCAA
GGTGCCTCTGTGGTGCCCCAAGGACCAAGCCAGCCCCTGCCTAGCACAGCCAATGTTGTGGTCA
TTGGTGGGGGCAGTTTGGGCTGCCAGACTCTGTACCACTTGGCCAAGCTGGGTGTAGGTGGAGT
TGTGCTGCTGGAGAGAGAGCGACTGACCTCTGGGACCACCTGGCACACAGCAGGCCTACTGTGG
CAGCTGCGGCCCAGCGATGTGGAAGTAGAGCTTCTGGCTCACACACGGCAAGTGGTGAGCCATG
ATCTGGAAGAGGAGACTGGGCTTCACACAGGCTGGATCCAGAATGGTGGCCTCTTCATCGCCTC
CAACCAGCAGCGCCTGGATGAATACAAGAGGCTCATGTCGTTGGGCAAGGCCTACGGTATAGAA
TCCCATGTGCTGAGCCCTGCAGAGACCAAGGATCTGTATCCGCTGATGAATGTGGACGACCTCT
ATGGGACCCTGTATGTGCCTCGGGATGGTACCATGGACCCGGCTGGCACCTGCACTACCCTCAC
CAGAGCAGCAGTGGCTAGGGGAGCTCAGGTCATTGAAAACTGTGCAGTGACTGGCATCCGTGTG
CGGACAGACGACTTTGGAGTGCGGCGGGTGACAGCTGTGGAGACTCAACATGGCTCCATCCAGA
CACCCTGCGTGGTCAACTGTGCAGGGGTGTGGGCGAGCTCCGTGGGCCGGATGGCTGGAGTGAA
GGTCCCGCTGGTGGCCATGCACCATGCCTACGTTGTCACTGAGCGCATTGAGGGGATCCAGAAC
ATGCCCAATGTCCGGGATCATGATGCTTCTGTCTACCTCCGCCTGCAGGGGGATGCCTTGTCTG
TGGGTGGCTATGAGGCCAACCCCATCTTTTGGGATGAGGTGTCAGACAAATTTGCCTTTGGCCT
CTTTGACCTGGACTGGGATGTGTTCACTCAGCACATTGAAGGTGCCATTAACCGTGTCCCCGTG
TTGGAGAAAACGGGGATCAAGTCCACTGTCTGTGGCCCTGAATCCTTCACACCCGACCATAAGC
CCCTGATGGGGGAGGCTCCTGAGCTCCGAGGCTTCTTCCTTGGCTGTGGCTTCAACAGTGCAGG
CATGATGTTGGGTGGTGGCTGTGGACAGGAGCTGGCCCATTGGATTGTGCATGGGCGCCCAGAG
AAGGACATGTACAGCTATGACATCAGGCGTTTCCACCACTCGCTCACGGACCACCCACGCTGGA
TCCGAGAGCGCAGCCACGAGTCCTATGCCAAGAACTACTCGGTTGTCTTTCCTCACGATGAGCC
CCTGGCGGGCCGCAACATGAGGAGGGACCCTCTGCACGAGGAGCTGCTTGGACAAGGCTGTGTG
TTTCAAGAACGACAGGGCTGGGAACGGCCAGGATGGTTCAACCCCCAAGAAACAGCTCAGGTCC
TAGACTACGACTACTATGGGGCCTACGGACACCAGGCACACAAGGACTACGCCTACAGCAGGCT
GCTGGGCGATGAATATACCTTCGACTTCCCACCCCACCACTGCGTGATCCAGAAGGAATGTCTG
GCCTGCAGAACGGCTGCCGCCGTGTTCAACATGTCTTACTTCGGGAAGTTCTACCTTCTGGGGG
CAGACGCCAGGAAGGCTGCAGACTGGCTCTTCTCAGCAGATGTCAACCGACCCCCAGGCTCCAC
GGTGTACACATGCATGCTGAACCAACGGGGAGGCACCGAGAGCGACCTGACTGTTAGCTGCCTG
GCCCCTGGTGCCCAGGCCAGTCCCCTGGCCCCTGCCTTTGAAGGGGATGGCTACTACCTAGCCG
TAGGTGGGGCTGTGGCCCAACATAACTGGTCCCACATAAACACGGTGCTGCAGGATCAGGAGTT
CCGGTGCCAGCTTATGGATTGTTCTGAAGATCTGGGCATGCTCAGTATCCAGGGCCCAGCCAGC
CGTGACATTCTCCAGGATGTGCTTGATGCTGACCTGAGCAATGAAGCCTTCCCCTTCTCCACCC
ACCAGCTGGTGAGAGCTGCTGGACACCTGGTCCGAGCCATCCGGCTATCCTTTGTCGGGGAGCT
GGGATGGGAGCTGCATGTGCCCCAAGCGTCCTGCTTGCCTGTGTACCGGGCTGTGATGGCTGCA
GGGGCGAAGCACGGCCTAGTCAATGCAGGCTACCGTGCCATCGACTCCCTGAGCATTGAGAAAG
GCTATCGGCACTGGCATGCAGACCTGAGGTCCGATGACAGCCCCCTGGAGGCAGGGTTGGCCTT
CACCTGCAAGCTCAAGACCTCAGTGCCCTTCCTAGGCCGAGAGGCCCTGGAGAAGCAGCGTGCC
ACAGGCCTCCGACGACGCCTGGTGTGCCTCACTGTGGAAGAGGAGGTTCCTATGTTCGGCCTAG
AGGCCATCTGGAGAAATGGCCAAGTGGTGGGCCATGTCCGGAGAGCTGACTTTGGATTCACCGT
GAACAAGACCATCGCCTATGGCTACATCCGAGACCCCAGTGGAGGGCCAGTCTCTCTGGACTTT
GTGAAGAATGGGGACTATGCCTTGGAGAGAATGGGGGTCACCTATGCTGCCCAGGTTCACCTGA
AGTCTCCCTTTGATCCTGACAACAAGCGGGTGAAGGGAATCTATTGATGGGCTGCAGGGTGGAG
GCTACAGCTGCTCAGGCCCCTGGAAACTGCCACACTTCCCATACGGCCTGTGGACTCCTATACT
GTACAAACAGCCCTGTGTCCTGAGACCCAAGATAAGGGCAAAACACAGACTTCCCACCCTGAGC
CTCCATCTGGTCCTGCTAACTGCCACAGCTCCTAACCAGTACCACATGGACCACTATGTTCCTC
CTGCTCACAGACCACACAGTGGTCTCCAATCCACTCTAGCCCTCCCAAAATGCACCCTGCAGAT
GTCTGGGCTCAAGGTCCCTGTGTATGGTTAACCCAAGATAGAAGCCATAAAGCAAGCAGGCATC
CAGTCTGTCCCTCACTTGGCTGACTGCAGTGGGTAGCTGGAGTGTCTGAAGGGTAGTGGATTGG
GAGAGTGAGCAGGGATTGATGAGTAATGTCTGCCATGGGTATAGGATGGAGGACACAGAGACAG
GTGCTGGACTGGTACAGTCCTTCTTCGGAATGGTTGCCTTTTAGACCAGAGAGAAGAAGGATAA
GCAGGCTCTTGCCCCTAGCCTTCCAGCTCTGCAGGAGAGAAAGCCTTCTGAGAGTCACCAACCA
GTGACACAGAAGGCATGTGGCATGGGATTTGGATCAGGAACCTCACTTACAAAGAAGTGTCATA
CTCTGCCTCAGTTTCCCCTCAAGCCATTGCTCATGGGTCTGGAGACACCAAGCTTTCACTCGTG
CATAACCCAGCTGCAGTGTATGTTTCCAAGGACTTTTTATTTCTGTCACAGATGCATGGCTTCC
TGATCAAGCTCTAGTGAGGGGCTGCTCCAGTTCTGCTTTGTGAGATAGAGTGGCCTCTTCTCCC
ACCCTGTGTAACCATCCACATATGTCCTCATATCAGGGGCACCCTGCCTCTCCTTCCTGGGGTG
AACAGCCATCACTTTTCTGTAGACCCAACCTTCTTCCTCTGTCTCACGCCCTGACTGAGAAATC
GGGCTGCTGTAGCTCCCCAAACAAAGATCACCGTGTAGCCTTATGTGCCTTGTAGTCTAGGAGA
GAAGGAGGCCATTGCAGTATGGAGTTGGGTGTCTTAAACCCAAAGAAGTCAGCAGAAGGGAGAT
GTGGGCACAATTGTCCTGGGTGGGCTCTGAATCTTCATAGATTCACACACCACACACTGTGCCG
GAAAAAGGTCAAGTTAATAAAATTTTACGAAACCGTT

hide sequence

RefSeq Acc Id:

XM_039104090 ⟹ XP_038960018

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	10,545,045 - 10,574,095 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446116	(Get FASTA)	NCBI Sequence Viewer
	XP_006233793	(Get FASTA)	NCBI Sequence Viewer
	XP_006233794	(Get FASTA)	NCBI Sequence Viewer
	XP_006233795	(Get FASTA)	NCBI Sequence Viewer
	XP_038960018	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB03674	(Get FASTA)	NCBI Sequence Viewer
	AAB04667	(Get FASTA)	NCBI Sequence Viewer
	AAD03414	(Get FASTA)	NCBI Sequence Viewer
	EDL93439	(Get FASTA)	NCBI Sequence Viewer
	Q64380	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_446116 ⟸ NM_053664

- UniProtKB:

O88499 (UniProtKB/Swiss-Prot), Q64380 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MASLSRVLRVAATCPRGRSARNLGLQPLAREARPTTEKSVPYQCTLKEEAQGASVVPQGPSQPL
PSTANVVVIGGGSLGCQTLYHLAKLGVGGVVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLA
HTRQVVSHDLEEETGLHTGWIQNGGLFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDLY
PLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVRRVTAV
ETQHGSIQTPCVVNCAGVWASSVGRMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYL
RLQGDALSVGGYEANPIFWDEVSDKFAFGLFDLDWDVFTQHIEGAINRVPVLEKTGIKSTVCGP
ESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIVHGRPEKDMYSYDIRRFHH
SLTDHPRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLHEELLGQGCVFQERQGWERPGWF
NPQETAQVLDYDYYGAYGHQAHKDYAYSRLLGDEYTFDFPPHHCVIQKECLACRTAAAVFNMSY
FGKFYLLGADARKAPDWLFSADVNRPPGSTVYTCMLNQRGGTESDLTVSCLAPGAQASPLAPAF
EGDGYYLAVGGAVAQHNWSHINTVLQDQEFRCQLMDCSEDLGMLSIQGPASRDILQDVLDADLS
NEAFPFSTHQLVRAAGHLVRAIRLSFVGELGWELHVPQASCLPVYRAVMAAGAKHGLVNAGYRA
IDSLSIEKGYRHWHADLRSDDSPLEAGLAFTCKLKTSVPFLGREALEKQRATGLRRRLVCLTVE
EEVPMFGLEAIWRNGQVVGHVRRADFGFTVNKTIAYGYIRDPSGGPVSLDFVKNGDYALERMGV
TYAAQVHLKSPFDPDNKRVKGIY

hide sequence

RefSeq Acc Id:	XP_006233795 ⟸ XM_006233733
- Peptide Label:	isoform X1
- UniProtKB:	F1LRY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLSRVLRVAATCPRGRSARNLGLQPLAREARPTTEKSVPYQCTLKEEAQGASVVPQGPSQPL PSTANVVVIGGGSLGCQTLYHLAKLGVGGVVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLA HTRQVVSHDLEEETGLHTGWIQNGGLFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDLY PLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVRRVTAV ETQHGSIQTPCVVNCAGVWASSVGRMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYL RLQGDALSVGGYEANPIFWDEVSDKFAFGLFDLDWDVFTQHIEGAINRVPVLEKTGIKSTVCGP ESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIVHGRPEKDMYSYDIRRFHH SLTDHPRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLHEELLGQGCVFQERQGWERPGWF NPQETAQVLDYDYYGAYGHQAHKDYAYSRLLGDEYTFDFPPHHCVIQKECLACRTAAAVFNMSY FGKFYLLGADARKAADWLFSADVNRPPGSTVYTCMLNQRGGTESDLTVSCLAPGAQASPLAPAF EGDGYYLAVGGAVAQHNWSHINTVLQDQEFRCQLMDCSEDLGMLSIQGPASRDILQDVLDADLS NEAFPFSTHQLVRAAGHLVRAIRLSFVGELGWELHVPQASCLPVYRAVMAAGAKHGLVNAGYRA IDSLSIEKGYRHWHADLRSDDSPLEAGLAFTCKLKTSVPFLGREALEKQRATGLRRRLVCLTVE EEVPMFGLEAIWRNGQVVGHVRRADFGFTVNKTIAYGYIRDPSGGPVSLDFVKNGDYALERMGV TYAAQVHLKSPFDPDNKRVKGIY hide sequence

RefSeq Acc Id:	XP_006233793 ⟸ XM_006233731
- Peptide Label:	isoform X1
- UniProtKB:	F1LRY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLSRVLRVAATCPRGRSARNLGLQPLAREARPTTEKSVPYQCTLKEEAQGASVVPQGPSQPL PSTANVVVIGGGSLGCQTLYHLAKLGVGGVVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLA HTRQVVSHDLEEETGLHTGWIQNGGLFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDLY PLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVRRVTAV ETQHGSIQTPCVVNCAGVWASSVGRMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYL RLQGDALSVGGYEANPIFWDEVSDKFAFGLFDLDWDVFTQHIEGAINRVPVLEKTGIKSTVCGP ESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIVHGRPEKDMYSYDIRRFHH SLTDHPRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLHEELLGQGCVFQERQGWERPGWF NPQETAQVLDYDYYGAYGHQAHKDYAYSRLLGDEYTFDFPPHHCVIQKECLACRTAAAVFNMSY FGKFYLLGADARKAADWLFSADVNRPPGSTVYTCMLNQRGGTESDLTVSCLAPGAQASPLAPAF EGDGYYLAVGGAVAQHNWSHINTVLQDQEFRCQLMDCSEDLGMLSIQGPASRDILQDVLDADLS NEAFPFSTHQLVRAAGHLVRAIRLSFVGELGWELHVPQASCLPVYRAVMAAGAKHGLVNAGYRA IDSLSIEKGYRHWHADLRSDDSPLEAGLAFTCKLKTSVPFLGREALEKQRATGLRRRLVCLTVE EEVPMFGLEAIWRNGQVVGHVRRADFGFTVNKTIAYGYIRDPSGGPVSLDFVKNGDYALERMGV TYAAQVHLKSPFDPDNKRVKGIY hide sequence

RefSeq Acc Id:	XP_006233794 ⟸ XM_006233732
- Peptide Label:	isoform X1
- UniProtKB:	F1LRY5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASLSRVLRVAATCPRGRSARNLGLQPLAREARPTTEKSVPYQCTLKEEAQGASVVPQGPSQPL PSTANVVVIGGGSLGCQTLYHLAKLGVGGVVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLA HTRQVVSHDLEEETGLHTGWIQNGGLFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDLY PLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVRRVTAV ETQHGSIQTPCVVNCAGVWASSVGRMAGVKVPLVAMHHAYVVTERIEGIQNMPNVRDHDASVYL RLQGDALSVGGYEANPIFWDEVSDKFAFGLFDLDWDVFTQHIEGAINRVPVLEKTGIKSTVCGP ESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQELAHWIVHGRPEKDMYSYDIRRFHH SLTDHPRWIRERSHESYAKNYSVVFPHDEPLAGRNMRRDPLHEELLGQGCVFQERQGWERPGWF NPQETAQVLDYDYYGAYGHQAHKDYAYSRLLGDEYTFDFPPHHCVIQKECLACRTAAAVFNMSY FGKFYLLGADARKAADWLFSADVNRPPGSTVYTCMLNQRGGTESDLTVSCLAPGAQASPLAPAF EGDGYYLAVGGAVAQHNWSHINTVLQDQEFRCQLMDCSEDLGMLSIQGPASRDILQDVLDADLS NEAFPFSTHQLVRAAGHLVRAIRLSFVGELGWELHVPQASCLPVYRAVMAAGAKHGLVNAGYRA IDSLSIEKGYRHWHADLRSDDSPLEAGLAFTCKLKTSVPFLGREALEKQRATGLRRRLVCLTVE EEVPMFGLEAIWRNGQVVGHVRRADFGFTVNKTIAYGYIRDPSGGPVSLDFVKNGDYALERMGV TYAAQVHLKSPFDPDNKRVKGIY hide sequence

RefSeq Acc Id:

ENSRNOP00000009555 ⟸ ENSRNOT00000009555

RefSeq Acc Id:	XP_038960018 ⟸ XM_039104090
- Peptide Label:	isoform X2

Protein Domains

DAO FAO_M GCV_T GCV_T_C

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q64380-F1-model_v2	AlphaFold	Q64380	1-919	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691924

Promoter ID:

EPDNEW_R2448

Type:

single initiation site

Name:

Sardh_1

Description:

sarcosine dehydrogenase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	5,802,123 - 5,802,183	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621125	AgrOrtholog
BioCyc Gene	G2FUF-50304	BioCyc
BioCyc Pathway	PWY-3661-1 [glycine betaine degradation II (mammalian)]	BioCyc
Ensembl Genes	ENSRNOG00000006916	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009555	ENTREZGENE
	ENSRNOP00000009555.6	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009555	ENTREZGENE
	ENSRNOT00000009555.8	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1360.120	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.50.50.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	FAD-dep_OxRdtase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FAD/NAD-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FAO_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GCV_T_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GcvT/YgfZ_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TrmE/GcvT_dom1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:114123	UniProtKB/Swiss-Prot
NCBI Gene	114123	ENTREZGENE
Pfam	DAO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FAO_M	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GCV_T	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GCV_T_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Sardh	PhenoGen
Superfamily-SCOP	SSF101790	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF51905	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	F1LRY5	ENTREZGENE, UniProtKB/TrEMBL
	O88499	ENTREZGENE
	Q64380	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	O88499	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Sardh	sarcosine dehydrogenase	LOC366279	similar to sarcosine dehydrogenase	Data Merged	737654	PROVISIONAL
2006-11-19	LOC366279	similar to sarcosine dehydrogenase			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-02-26	Sardh	sarcosine dehydrogenase			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Sardh	sarcosine dehydrogenase			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the mitochondrial matrix	634034
gene_expression	expressed in liver,lung, pancreas, kidney, thymus, and oviduct	634034

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)