Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Txndc15 | Rat | Meckel Syndrome 14 | | ISO | TXNDC15 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Txndc15 | Rat | Meckel Syndrome 14 | | ISO | TXNDC15 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | GOA pipeline | RGD automated data pipeline |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Txndc15 (Rattus norvegicus - Norway rat) |
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TXNDC15 (Homo sapiens - human) |
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Txndc15 (Mus musculus - house mouse) |
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Txndc15 (Chinchilla lanigera - long-tailed chinchilla) |
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TXNDC15 (Pan paniscus - bonobo/pygmy chimpanzee) |
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TXNDC15 (Canis lupus familiaris - dog) |
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Txndc15 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TXNDC15 (Sus scrofa - pig) |
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TXNDC15 (Chlorocebus sabaeus - green monkey) |
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Txndc15 (Heterocephalus glaber - naked mole-rat) |
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Variants in Txndc15
52 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001024998 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008771497 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC139608 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC091340 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474032 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000000146 ⟹ ENSRNOP00000000146 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000071426 ⟹ ENSRNOP00000067457 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000100127 ⟹ ENSRNOP00000090384 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001024998 ⟹ NP_001020169 | ||||||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008771497 ⟹ XP_008769719 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001020169 | (Get FASTA) | NCBI Sequence Viewer |
XP_008769719 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH91340 | (Get FASTA) | NCBI Sequence Viewer |
EDL93957 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000000146.6 | ||
ENSRNOP00000067457.2 | |||
ENSRNOP00000090384.1 | |||
ENSRNOP00000096138.1 | |||
GenBank Protein | Q5BJT4 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001020169 ⟸ NM_001024998 |
- Peptide Label: | precursor |
- UniProtKB: | Q5BJT4 (UniProtKB/Swiss-Prot), A0A8I6AP63 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008769719 ⟸ XM_008771497 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6KAP9 (UniProtKB/TrEMBL), A0A8I6AP63 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000000146 ⟸ ENSRNOT00000000146 |
Ensembl Acc Id: | ENSRNOP00000090384 ⟸ ENSRNOT00000100127 |
Ensembl Acc Id: | ENSRNOP00000067457 ⟸ ENSRNOT00000071426 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q5BJT4-F1-model_v2 | AlphaFold | Q5BJT4 | 1-343 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13700295 | ||||||||
Promoter ID: | EPDNEW_R10818 | ||||||||
Type: | initiation region | ||||||||
Name: | Txndc15_1 | ||||||||
Description: | thioredoxin domain containing 15 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1304696 | AgrOrtholog |
BioCyc Gene | G2FUF-10222 | BioCyc |
Ensembl Genes | ENSRNOG00000000133 | Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00000069255 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000000146.8 | UniProtKB/Swiss-Prot |
ENSRNOT00000071426.3 | UniProtKB/TrEMBL | |
ENSRNOT00000100127.1 | UniProtKB/TrEMBL | |
ENSRNOT00000109385.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.1360.20 | UniProtKB/TrEMBL |
Glutaredoxin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7315216 | IMAGE-MGC_LOAD |
InterPro | PCD_sf | UniProtKB/TrEMBL |
Pterin_deHydtase | UniProtKB/TrEMBL | |
Thioredoxin-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Thioredoxin_domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
TXNDC15 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:307180 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:109343 | IMAGE-MGC_LOAD |
NCBI Gene | 307180 | ENTREZGENE |
PANTHER | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE 2 | UniProtKB/TrEMBL |
PTHR12599 | UniProtKB/TrEMBL | |
PTHR14684 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
THIOREDOXIN DOMAIN-CONTAINING PROTEIN 15 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Pterin_4a | UniProtKB/TrEMBL |
Thioredoxin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Txndc15 | PhenoGen |
PROSITE | THIOREDOXIN_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000000133 | RatGTEx |
ENSRNOG00000069255 | RatGTEx | |
Superfamily-SCOP | SSF52833 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF55248 | UniProtKB/TrEMBL | |
UniProt | A0A8I6AE92_RAT | UniProtKB/TrEMBL |
A0A8I6AP63 | ENTREZGENE, UniProtKB/TrEMBL | |
A6KAP9 | ENTREZGENE, UniProtKB/TrEMBL | |
M0RCX0_RAT | UniProtKB/TrEMBL | |
Q5BJT4 | ENTREZGENE, UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Txndc15 | thioredoxin domain containing 15 | LOC103690142 | uncharacterized LOC103690142 | Data merged from RGD:9357931 | 737654 | PROVISIONAL |
2014-08-25 | LOC103690142 | uncharacterized LOC103690142 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-03-04 | Txndc15 | thioredoxin domain containing 15 | RGD1304696 | similar to hypothetical protein FLJ22625 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-12-06 | RGD1304696 | similar to hypothetical protein FLJ22625 | RGD1304696_predicted | similar to hypothetical protein FLJ22625 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
2005-01-20 | RGD1304696_predicted | similar to hypothetical protein FLJ22625 (predicted) | LOC307180_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC307180_predicted | similar to hypothetical protein FLJ22625 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |