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ONTOLOGY REPORT - ANNOTATIONS

Term:T cell differentiation
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Accession:GO:0030217 term browser browse the term
Definition:The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
Comment:Note that the term 'thymocyte differentiation' was merged into this term because thymocytes are T cells, and thus the term was essentially redundant. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms:exact_synonym: T lymphocyte differentiation
 related_synonym: T cell development
 alt_id: GO:0042112;   GO:0046652


show annotations for term's descendants           Sort by:
T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of IMP (PMID:7731963)
(PMID:9478961)		 MGI PMID:7731963 PMID:9478961 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 acts_upstream_of_or_within IMP (PMID:31539517) MGI PMID:31539517 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Bcl11a BCL11 transcription factor A acts_upstream_of_or_within IMP (PMID:12717432) MGI PMID:12717432 NCBI chr11:24,026,498...24,123,558
Ensembl chr11:24,028,056...24,124,123 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IGI
IMP		 (PMID:9215624)
(PMID:8170972)		 MGI PMID:8170972 PMID:9215624 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bcl2a1d B cell leukemia/lymphoma 2 related protein A1d acts_upstream_of_or_within IMP (PMID:15728238) MGI PMID:15728238 NCBI chr 9:88,605,341...88,613,903
Ensembl chr 9:88,605,338...88,613,967 		JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit NOT|acts_upstream_of_or_within IMP (PMID:17028169) MGI PMID:17028169 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843 		JBrowse link
G Cd4 CD4 antigen involved_in ISS
ISO		 (MGI:3687440|PMID:1533274) UniProt
MGI		 PMID:1533274 GO_REF:0000119 MGI:3687440 MGI:4834177 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:14608382) MGI PMID:14608382 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IDA (MGI:3044313|PMID:15146182) UniProt PMID:15146182 MGI:3044313 NCBI chr 2:119,156,286...119,166,145
Ensembl chr 2:119,156,265...119,166,443 		JBrowse link
G Dtx1 deltex 1, E3 ubiquitin ligase acts_upstream_of IDA (PMID:12794108) MGI PMID:12794108 NCBI chr 5:120,818,268...120,850,879
Ensembl chr 5:120,818,267...120,849,992 		JBrowse link
G Egr1 early growth response 1 acts_upstream_of_or_within IMP (PMID:12165491) MGI PMID:12165491 NCBI chr18:34,994,260...34,998,009
Ensembl chr18:34,992,876...34,998,037 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (PMID:23169635) MGI PMID:23169635 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Fadd Fas associated via death domain involved_in TAS (MGI:5306292|PMID:18309324) UniProt PMID:18309324 MGI:5306292 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Fosl2 fos-like antigen 2 acts_upstream_of_or_within IDA (PMID:32610127) MGI PMID:32610127 NCBI chr 5:32,292,599...32,315,184
Ensembl chr 5:32,293,145...32,315,186 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IDA
ISO		 (PMID:7956841)
(PMID:8088776)		 MGI PMID:7956841 PMID:8088776 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 ISO RGD PMID:16103028 RGD:1579831 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Gpr89 G protein-coupled receptor 89 involved_in IMP (MGI:6405642|PMID:32220963) UniProt PMID:32220963 MGI:6405642 NCBI chr 3:96,775,630...96,812,662
Ensembl chr 3:96,775,597...96,812,662 		JBrowse link
G Hmga1 high mobility group AT-hook 1 acts_upstream_of_or_within IMP (PMID:15713121) MGI PMID:15713121 NCBI chr17:27,774,798...27,782,649
Ensembl chr17:27,775,471...27,782,648 		JBrowse link
G Hs1bp3 HCLS1 binding protein 3 acts_upstream_of_or_within TAS (PMID:10590261) MGI PMID:10590261 NCBI chr12:8,363,389...8,393,824
Ensembl chr12:8,363,432...8,393,824 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (PMID:7923373) MGI PMID:7923373 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Ikzf3 IKAROS family zinc finger 3 involved_in IMP (MGI:6740265|PMID:34155405) UniProt PMID:34155405 MGI:6740265 NCBI chr11:98,355,436...98,437,157
Ensembl chr11:98,355,728...98,436,857 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within IGI
IMP		 (PMID:9215624) MGI PMID:9215624 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (PMID:14517551) MGI PMID:14517551 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Jag2 jagged 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Kat7 K(lysine) acetyltransferase 7 involved_in IMP (MGI:6393224|PMID:27733580) GO_Central PMID:27733580 MGI:6393224 NCBI chr11:95,162,683...95,201,030
Ensembl chr11:95,165,085...95,201,072 		JBrowse link
G Kdelr1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 acts_upstream_of_or_within IMP (PMID:26438836) MGI PMID:26438836 NCBI chr 7:45,522,264...45,533,150
Ensembl chr 7:45,522,196...45,533,156 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in IMP (MGI:2387257|PMID:12354381) UniProt PMID:12354381 MGI:2387257 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Lck lymphocyte protein tyrosine kinase involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:129,442,142...129,467,415
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Lep leptin involved_in IMP (MGI:1277764|PMID:9732873) UniProt PMID:9732873 MGI:1277764 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876 		JBrowse link
G Lepr leptin receptor involved_in IMP (MGI:1277764|PMID:9732873) UniProt PMID:9732873 MGI:1277764 NCBI chr 4:101,574,393...101,676,375
Ensembl chr 4:101,574,601...101,672,549 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IMP (MGI:3838059|PMID:19217325) UniProt PMID:19217325 MGI:3838059 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300 		JBrowse link
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (PMID:19179613) MGI PMID:19179613 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Lmbr1l limb region 1 like involved_in IMP (MGI:6303730|PMID:31073040) UniProt PMID:31073040 MGI:6303730 NCBI chr15:98,801,798...98,815,944
Ensembl chr15:98,801,798...98,816,112 		JBrowse link
G Muc19 mucin 19 acts_upstream_of_or_within IMP (PMID:31539517) MGI PMID:31539517 NCBI chr15:91,722,531...91,832,440
Ensembl chr15:91,722,531...91,832,447 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 acts_upstream_of_or_within IMP (PMID:9768749) MGI PMID:9768749 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (PMID:31182790)
(PMID:26019294)		 MGI PMID:26019294 PMID:31182790 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in ISS
ISO		 (MGI:3694283|PMID:16439204) UniProt
MGI		 PMID:16439204 GO_REF:0000119 MGI:3694283 MGI:4834177 NCBI chr 1:75,006,505...75,101,870
Ensembl chr 1:75,006,298...75,101,844 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of IDA (PMID:12794108) MGI PMID:12794108 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351 		JBrowse link
G Patz1 POZ (BTB) and AT hook containing zinc finger 1 acts_upstream_of_or_within IDA (PMID:16491076) MGI PMID:16491076 NCBI chr11:3,239,131...3,259,083
Ensembl chr11:3,238,874...3,259,083 		JBrowse link
G Pknox1 Pbx/knotted 1 homeobox acts_upstream_of_or_within IMP (PMID:16314502) MGI PMID:16314502 NCBI chr17:31,783,697...31,826,665
Ensembl chr17:31,783,708...31,826,667 		JBrowse link
G Ppp3cb protein phosphatase 3, catalytic subunit, beta isoform acts_upstream_of_or_within IMP (PMID:12091710) MGI PMID:12091710 NCBI chr14:20,549,432...20,596,641
Ensembl chr14:20,549,432...20,596,641 		JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 acts_upstream_of_or_within IGI (PMID:21178006) MGI PMID:21178006 NCBI chr 2:166,408,265...166,555,752
Ensembl chr 2:166,408,262...166,555,752 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in IMP (MGI:1096020|PMID:9271584) UniProt PMID:9271584 MGI:1096020 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) acts_upstream_of_or_within IMP (PMID:14752163) MGI PMID:14752163 NCBI chr 3:103,763,891...103,819,568
Ensembl chr 3:103,767,111...103,819,563 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C involved_in IMP (MGI:3521537|PMID:15557316), (MGI:61371|PMID:8334701) UniProt PMID:8334701 PMID:15557316 MGI:3521537 MGI:61371 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO RGD PMID:17434290 RGD:15036800 NCBI chr10:27,950,406...28,473,393
Ensembl chr10:27,950,816...28,473,393 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (PMID:11980719), (PMID:14595002) MGI PMID:11980719 PMID:14595002 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rhoh ras homolog family member H involved_in IDA (MGI:3686961|PMID:17028588), (MGI:3822992|PMID:17119112) UniProt PMID:17028588 PMID:17119112 MGI:3686961 MGI:3822992 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IDA (PMID:7862157) MGI PMID:7862157 NCBI chr17:44,806,873...45,125,518
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of IDA (PMID:21300860) MGI PMID:21300860 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 involved_in IMP (MGI:3813366|PMID:9174623) BHF-UCL PMID:9174623 MGI:3813366 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IMP (PMID:12676787) MGI PMID:12676787 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G Tbx21 T-box 21 acts_upstream_of_or_within IMP (PMID:20399120) MGI PMID:20399120 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (PMID:15294947) MGI PMID:15294947 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (PMID:17481928) MGI PMID:17481928 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in IMP (PMID:22585710) MGI PMID:22585710 NCBI chr10:39,488,930...39,531,303
Ensembl chr10:39,488,930...39,531,303 		JBrowse link
G Vav1 vav 1 oncogene acts_upstream_of_or_within IGI
TAS		 (PMID:21178006)
(PMID:11070165)		 MGI PMID:11070165 PMID:21178006 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of IDA (PMID:19723499) MGI PMID:19723499 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031 		JBrowse link
G Wwp1 WW domain containing E3 ubiquitin protein ligase 1 involved_in TAS (MGI:3688077|PMID:11375995) UniProt PMID:11375995 MGI:3688077 NCBI chr 4:19,608,296...19,709,004
Ensembl chr 4:19,608,303...19,708,993 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of IMP (PMID:9208839) MGI PMID:9208839 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:18025176) MGI PMID:18025176 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:18025176) MGI PMID:18025176 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Ada adenosine deaminase acts_upstream_of IMP (PMID:11067867), (PMID:12163459), (PMID:16670300)
(PMID:11067867), (PMID:16670300)		 MGI PMID:11067867 PMID:12163459 PMID:16670300 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Anxa1 annexin A1 involved_in IMP (MGI:4943619|PMID:20139728) BHF-UCL PMID:20139728 MGI:4943619 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:12717433) MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (PMID:17210642) MGI PMID:17210642 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:23334952) MGI PMID:23334952 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:15855276) MGI PMID:15855276 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Pnp purine-nucleoside phosphorylase acts_upstream_of IMP (PMID:9122228)
(PMID:10859343), (PMID:16964310)		 MGI PMID:9122228 PMID:10859343 PMID:16964310 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869 		JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in IMP (PMID:27657535) MGI PMID:27657535 NCBI chr13:55,612,080...55,620,968
Ensembl chr13:55,612,080...55,620,967 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IMP (PMID:15247480) MGI PMID:15247480 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Rpl22 ribosomal protein L22 acts_upstream_of_or_within IMP (PMID:17555992) MGI PMID:17555992 NCBI chr 4:152,408,893...152,418,539
Ensembl chr 4:152,410,199...152,418,528 		JBrowse link
G Shh sonic hedgehog acts_upstream_of IMP (PMID:10981962) MGI PMID:10981962 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of IGI
IMP		 (PMID:9275205)
(PMID:9208839)
(PMID:7630421)		 MGI PMID:7630421 PMID:9208839 PMID:9275205 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
beta selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IGI (PMID:9275205) MGI PMID:9275205 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IGI (PMID:9275205) MGI PMID:9275205 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:18228248) MGI PMID:18228248 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase acts_upstream_of_or_within IMP (PMID:16501569) MGI PMID:16501569 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573 		JBrowse link
G Shh sonic hedgehog involved_in IMP
ISO		 (MGI:3834308|PMID:17227833) BHF-UCL
MGI		 PMID:17227833 GO_REF:0000119 MGI:3834308 MGI:4834177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within IMP (PMID:28169274) MGI PMID:28169274 NCBI chr 7:127,836,460...127,844,272
Ensembl chr 7:127,836,514...127,844,272 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:23334952) MGI PMID:23334952 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cd83 CD83 antigen acts_upstream_of IMP (PMID:15322158) MGI PMID:15322158 NCBI chr13:43,938,661...43,956,608
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IDA (PMID:17028180) MGI PMID:17028180 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within IMP (PMID:20194894) MGI PMID:20194894 NCBI chr 6:48,715,981...48,720,729
Ensembl chr 6:48,715,988...48,720,729 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (PMID:10926756) MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (PMID:16093716) MGI PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in IMP (MGI:3844206|PMID:19047684) UniProt PMID:19047684 MGI:3844206 NCBI chr12:26,492,742...26,506,451
Ensembl chr12:26,492,745...26,506,451 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of IMP (PMID:16227612) MGI PMID:16227612 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 acts_upstream_of_or_within IMP (PMID:10716941) MGI PMID:10716941 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in IMP (MGI:2655909|PMID:9545226) UniProt PMID:9545226 MGI:2655909 NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of		 ISO
IMP		 (PMID:22079196)
(PMID:16301745), (PMID:18573908)
(PMID:16275384)		 CACAO
MGI		 PMID:16275384 PMID:16301745 PMID:18573908 PMID:22079196 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Fut7 fucosyltransferase 7 acts_upstream_of_or_within IMP (PMID:18573908) MGI PMID:18573908 NCBI chr 2:25,312,363...25,316,386
Ensembl chr 2:25,313,279...25,316,386 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of IMP (PMID:16227984) MGI PMID:16227984 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within IMP (PMID:11030619) MGI PMID:11030619 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367 		JBrowse link
G Pla2g2d phospholipase A2, group IID acts_upstream_of_or_within IDA (PMID:19564598) MGI PMID:19564598 NCBI chr 4:138,503,046...138,509,363
Ensembl chr 4:138,503,046...138,509,357 		JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD8-positive, alpha-beta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within IDA
IMP		 (PMID:25348153) MGI PMID:25348153 NCBI chr14:122,148,846...122,153,300
Ensembl chr14:122,148,665...122,153,193 		JBrowse link
CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within IMP (PMID:20194894) MGI PMID:20194894 NCBI chr 6:48,715,981...48,720,729
Ensembl chr 6:48,715,988...48,720,729 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IDA (MGI:5751358|PMID:25644000) UniProt PMID:25644000 MGI:5751358 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irf1 interferon regulatory factor 1 acts_upstream_of_or_within IMP (PMID:11359801) MGI PMID:11359801 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Otud5 OTU domain containing 5 acts_upstream_of_or_within IMP (PMID:25470037) MGI PMID:25470037 NCBI chr  X:7,705,852...7,742,861
Ensembl chr  X:7,707,603...7,742,865 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (PMID:16093716) MGI PMID:16093716 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 acts_upstream_of_or_within IMP (PMID:31915251)
(PMID:17540904)		 MGI PMID:17540904 PMID:31915251 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 acts_upstream_of_or_within IMP (PMID:10716941), (PMID:15814699) MGI PMID:10716941 PMID:15814699 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
G Tnfsf8 tumor necrosis factor (ligand) superfamily, member 8 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:16177108) MGI
GO_Central		 PMID:16177108 GO_REF:0000033 NCBI chr 4:63,749,439...63,779,745
Ensembl chr 4:63,749,545...63,779,584 		JBrowse link
CD8-positive, alpha-beta T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in IDA
IBA
ISO		 (MGI:4399030|PMID:14605368) UniProt
GO_Central
MGI		 PMID:14605368 GO_REF:0000033 GO_REF:0000119 MGI:4399030 MGI:4834177 NCBI chr 9:118,307,259...118,315,176
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within IDA (PMID:17277142) MGI PMID:17277142 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (PMID:8170972) MGI PMID:8170972 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:2159528|PMID:11850626), (MGI:3045816|PMID:15078895) UniProt PMID:11850626 PMID:15078895 MGI:2159528 MGI:3045816 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD8-positive, gamma-delta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr9 C-C motif chemokine receptor 9 acts_upstream_of_or_within IMP (PMID:25348153) MGI PMID:25348153 NCBI chr 9:123,596,276...123,612,522
Ensembl chr 9:123,507,504...123,613,395 		JBrowse link
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within IDA
IMP		 (PMID:25348153) MGI PMID:25348153 NCBI chr14:122,148,846...122,153,300
Ensembl chr14:122,148,665...122,153,193 		JBrowse link
G Klrc1 killer cell lectin-like receptor subfamily C, member 1 involved_in ISO (PMID:18064301) UniProt PMID:18064301 NCBI chr 6:129,642,978...129,659,815
Ensembl chr 6:129,642,978...129,655,936 		JBrowse link
cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd8a CD8 subunit alpha acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:1673361) MGI
GO_Central		 PMID:1673361 GO_REF:0000033 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
DN2 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in IMP (MGI:5784970|PMID:24638065) UniProt PMID:24638065 MGI:5784970 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (PMID:10911993), (PMID:9823897) MGI PMID:9823897 PMID:10911993 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (PMID:9875844) MGI PMID:9875844 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 acts_upstream_of_or_within IMP (PMID:9875844) MGI PMID:9875844 NCBI chr13:89,997,033...90,237,727
Ensembl chr13:89,922,146...90,237,727 		JBrowse link
DN3 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 C-C motif chemokine receptor 6 involved_in IMP (MGI:5784970|PMID:24638065) UniProt PMID:24638065 MGI:5784970 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
DN4 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:18025176) MGI PMID:18025176 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (PMID:18025176) MGI PMID:18025176 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (PMID:17210642) MGI PMID:17210642 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 involved_in IMP (MGI:3820023|PMID:17579027) UniProt PMID:17579027 MGI:3820023 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
extrathymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btnl1 butyrophilin-like 1 involved_in IMP
IGI		 (PMID:27641500) MGI PMID:27641500 NCBI chr17:34,596,097...34,605,136
Ensembl chr17:34,596,106...34,605,002 		JBrowse link
G Btnl6 butyrophilin-like 6 involved_in IGI (PMID:27641500) MGI PMID:27641500 NCBI chr17:34,726,844...34,737,750
Ensembl chr17:34,726,778...34,736,326 		JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within IMP (PMID:10704459) MGI PMID:10704459 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged 2 involved_in IMP (MGI:1342169|PMID:10383933) UniProt PMID:10383933 MGI:1342169 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of IMP (PMID:7807014) MGI PMID:7807014 NCBI chr 4:129,442,142...129,467,415
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of IMP (PMID:7807014) MGI PMID:7807014 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of IDA (PMID:21300860) MGI PMID:21300860 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 involved_in IMP (MGI:3695974|PMID:17218525), (MGI:6276541|PMID:30413363) UniProt PMID:17218525 PMID:30413363 MGI:3695974 MGI:6276541 NCBI chr 1:133,310,038...133,352,159
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of IMP (PMID:7477352)
(PMID:8790395)		 MGI PMID:7477352 PMID:8790395 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Tcf7 transcription factor 7, T cell specific involved_in IMP (MGI:6276541|PMID:30413363) UniProt PMID:30413363 MGI:6276541 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
gamma-delta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scart2 scavenger receptor family member expressed on T cells 2 acts_upstream_of_or_within IDA (PMID:18641307) MGI PMID:18641307 NCBI chr 7:139,827,192...139,880,647
Ensembl chr 7:139,827,197...139,880,649 		JBrowse link
immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of IMP (PMID:17210642) MGI PMID:17210642 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Clec4g C-type lectin domain family 4, member g acts_upstream_of IMP (PMID:23487419) MGI PMID:23487419 NCBI chr 8:3,757,066...3,770,695
Ensembl chr 8:3,757,064...3,770,651 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 acts_upstream_of IMP (PMID:16230479) MGI PMID:16230479 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IMP (PMID:16230479) MGI PMID:16230479 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Ifnar2 interferon (alpha and beta) receptor 2 acts_upstream_of_or_within IDA (PMID:11154225) MGI PMID:11154225 NCBI chr16:91,166,517...91,202,477
Ensembl chr16:91,169,671...91,202,477 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of IMP (PMID:11894098) MGI PMID:11894098 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IMP (PMID:18617424) MGI PMID:18617424 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within IMP (PMID:25271321) MGI PMID:25271321 NCBI chr 2:28,531,005...28,581,183
Ensembl chr 2:28,531,240...28,581,179 		JBrowse link
negative regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:4355451|PMID:19667090) BHF-UCL PMID:19667090 MGI:4355451 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:10981962) MGI PMID:10981962 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
negative regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core binding factor beta involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Runx1 runt related transcription factor 1 involved_in IDA (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
negative regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a2 solute carrier family 4 (anion exchanger), member 2 involved_in IMP (MGI:6840447|PMID:24515893) UniProt PMID:24515893 MGI:6840447 NCBI chr 5:24,628,834...24,645,945
Ensembl chr 5:24,628,835...24,645,948 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:5446998|PMID:22730529), (MGI:6140589|PMID:24880459) UniProt PMID:22730529 PMID:24880459 MGI:5446998 MGI:6140589 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
negative regulation of cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,366,999...51,372,709
Ensembl chr10:51,367,052...51,372,707 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,356,757...51,362,417
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
negative regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cdkn2a cyclin dependent kinase inhibitor 2A involved_in IMP (MGI:3615850|PMID:15964995) HGNC-UCL PMID:15964995 MGI:3615850 NCBI chr 4:89,192,710...89,212,856
Ensembl chr 4:89,192,708...89,212,890 		JBrowse link
G Clec4g C-type lectin domain family 4, member g acts_upstream_of_or_within IMP (PMID:23487419) MGI PMID:23487419 NCBI chr 8:3,757,066...3,770,695
Ensembl chr 8:3,757,064...3,770,651 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 acts_upstream_of_or_within IMP (PMID:16230479) MGI PMID:16230479 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Tmem131l transmembrane 131 like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:83,804,955...83,947,497
Ensembl chr 3:83,804,962...83,947,482 		JBrowse link
negative regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgl2 fibrinogen-like protein 2 acts_upstream_of_or_within IMP (PMID:29341118) MGI PMID:29341118 NCBI chr 5:21,577,671...21,583,384
Ensembl chr 5:21,577,640...21,583,372 		JBrowse link
negative regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in IMP (MGI:5320871|PMID:22080863) UniProt PMID:22080863 MGI:5320871 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
negative regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 antigen involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr 2:102,641,486...102,732,014
Ensembl chr 2:102,641,486...102,732,010 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991 		JBrowse link
G Hspb1 heat shock protein 1 involved_in ISO RGD
MGI		 PMID:30287503 GO_REF:0000096 MGI:4417868 RGD:38549580 NCBI chr 5:135,916,773...135,918,417
Ensembl chr 5:135,916,773...135,918,417 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in IMP (MGI:3803082|PMID:18641303) UniProt PMID:18641303 MGI:3803082 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Lag3 lymphocyte-activation gene 3 involved_in IMP (MGI:3510279|PMID:15485628) UniProt PMID:15485628 MGI:3510279 NCBI chr 6:124,881,322...124,888,668
Ensembl chr 6:124,881,324...124,888,668 		JBrowse link
G Mdk midkine involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:91,760,149...91,762,348
Ensembl chr 2:91,760,150...91,762,642 		JBrowse link
G Mir21a microRNA 21a involved_in ISO (PMID:22387553) BHF-UCL PMID:22387553 NCBI chr11:86,474,893...86,474,984
Ensembl chr11:86,474,893...86,474,984 		JBrowse link
G Mir30b microRNA 30b involved_in ISO (PMID:22387553) BHF-UCL PMID:22387553 NCBI chr15:68,209,264...68,209,359
Ensembl chr15:68,209,264...68,209,359 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IMP (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
G Tug1 taurine upregulated gene 1 ISO RGD PMID:30287503 RGD:38549580 NCBI chr11:3,589,313...3,599,021
Ensembl chr11:3,589,785...3,599,673 		JBrowse link
negative regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (PMID:7679955) MGI PMID:7679955 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Dtx1 deltex 1, E3 ubiquitin ligase acts_upstream_of_or_within IDA (PMID:12794108) MGI PMID:12794108 NCBI chr 5:120,818,268...120,850,879
Ensembl chr 5:120,818,267...120,849,992 		JBrowse link
G Ifnb1 interferon beta 1, fibroblast involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:88,440,253...88,441,083
Ensembl chr 4:88,440,262...88,441,011 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IDA (PMID:12794108) MGI PMID:12794108 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351 		JBrowse link
G Prdx2 peroxiredoxin 2 acts_upstream_of_or_within IMP (PMID:16290204) MGI PMID:16290204 NCBI chr 8:85,696,251...85,701,440
Ensembl chr 8:85,696,216...85,701,463 		JBrowse link
negative regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Foxj1 forkhead box J1 involved_in IMP (MGI:3713603|PMID:16339515) BHF-UCL PMID:16339515 MGI:3713603 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta acts_upstream_of_or_within IDA (PMID:11931770) MGI PMID:11931770 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Rag2 recombination activating gene 2 involved_in ISO RGD
MGI		 PMID:30206106 GO_REF:0000096 MGI:4417868 RGD:38508903 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (PMID:10981962) MGI PMID:10981962 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:128,768,188...128,786,018
Ensembl chr 2:128,768,188...128,785,997 		JBrowse link
G Zfp608 zinc finger protein 608 involved_in TAS (MGI:5908329|PMID:23076336) UniProt PMID:23076336 MGI:5908329 NCBI chr18:55,021,117...55,125,690
Ensembl chr18:55,021,120...55,125,627 		JBrowse link
negative regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IMP (MGI:5565031|PMID:24463518) UniProt PMID:24463518 MGI:5565031 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of_or_within IGI (PMID:16424184) MGI PMID:16424184 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Jak3 Janus kinase 3 involved_in IMP (MGI:3719947|PMID:16020505) BHF-UCL PMID:16020505 MGI:3719947 NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4942267|PMID:9670042) BHF-UCL PMID:9670042 MGI:4942267 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
negative regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IMP (MGI:5565031|PMID:24463518) UniProt PMID:24463518 MGI:5565031 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Foxp3 forkhead box P3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Il2 interleukin 2 involved_in IGI (MGI:5634593|PMID:25642768) BHF-UCL PMID:25642768 MGI:5634593 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within IDA (PMID:18792410) MGI PMID:18792410 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Pf4 platelet factor 4 involved_in ISO RGD
MGI		 PMID:24986443 GO_REF:0000096 MGI:4417868 RGD:329901907 NCBI chr 5:90,920,362...90,921,242
Ensembl chr 5:90,920,294...90,921,242 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915 		JBrowse link
G Smad7 SMAD family member 7 involved_in IMP (MGI:5634593|PMID:25642768) BHF-UCL PMID:25642768 MGI:5634593 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006 		JBrowse link
G Tbx21 T-box 21 involved_in IDA (MGI:4868293|PMID:21151104) UniProt PMID:21151104 MGI:4868293 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (PMID:23034280) MGI PMID:23034280 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633 		JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Loxl3 lysyl oxidase-like 3 involved_in IMP
ISO		 (MGI:5825383|PMID:28065600) UniProt
MGI		 PMID:28065600 GO_REF:0000119 MGI:4834177 MGI:5825383 NCBI chr 6:83,011,186...83,029,547
Ensembl chr 6:83,011,154...83,029,543 		JBrowse link
G Tbx21 T-box 21 involved_in IMP (MGI:4868293|PMID:21151104) UniProt PMID:21151104 MGI:4868293 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tnfsf18 tumor necrosis factor (ligand) superfamily, member 18 involved_in IMP (MGI:5551556|PMID:24107315) UniProt PMID:24107315 MGI:5551556 NCBI chr 1:161,322,221...161,333,903
Ensembl chr 1:161,322,224...161,332,859 		JBrowse link
negative regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IMP (MGI:5565031|PMID:24463518) UniProt PMID:24463518 MGI:5565031 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of_or_within IGI (PMID:12594267) MGI PMID:12594267 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IMP
IGI		 (PMID:16424184) MGI PMID:16424184 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in TAS (MGI:5319622|PMID:11244049) UniProt PMID:11244049 MGI:5319622 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IDA (MGI:3687909|PMID:12242343) UniProt PMID:12242343 MGI:3687909 NCBI chr17:87,414,707...87,445,153
Ensembl chr17:87,415,107...87,445,267 		JBrowse link
G Zfp35 zinc finger protein 35 acts_upstream_of_or_within IMP (PMID:19783676) MGI PMID:19783676 NCBI chr18:24,122,134...24,138,428
Ensembl chr18:24,122,689...24,138,433 		JBrowse link
negative regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IMP (PMID:15917799) MGI PMID:15917799 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
negative T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Themis thymocyte selection associated involved_in IMP (MGI:4352756|PMID:19597499), (MGI:4352757|PMID:19597498) UniProt PMID:19597498 PMID:19597499 MGI:4352756 MGI:4352757 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
negative thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:23382543) MGI
GO_Central		 PMID:23382543 GO_REF:0000033 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within IGI
IMP		 (PMID:23382543) MGI PMID:23382543 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Ccr7 C-C motif chemokine receptor 7 involved_in IMP (MGI:3847607|PMID:17785582) BHF-UCL PMID:17785582 MGI:3847607 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Cd28 CD28 antigen acts_upstream_of_or_within IMP (PMID:10429671) MGI PMID:10429671 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide acts_upstream_of_or_within IDA (PMID:7630421) MGI PMID:7630421 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (PMID:7679955) MGI PMID:7679955 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 acts_upstream_of_or_within IMP (PMID:12871644) MGI PMID:12871644 NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within IMP (PMID:10429671) MGI PMID:10429671 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:4355451|PMID:19667090) BHF-UCL PMID:19667090 MGI:4355451 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Mink1 misshapen-like kinase 1 (zebrafish) acts_upstream_of_or_within IMP (PMID:15608642) MGI PMID:15608642 NCBI chr11:70,452,272...70,505,309
Ensembl chr11:70,453,707...70,505,309 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of_or_within IMP (PMID:8666928) MGI PMID:8666928 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3834308|PMID:17227833) BHF-UCL PMID:17227833 MGI:3834308 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Spn sialophorin acts_upstream_of_or_within IMP (PMID:10429671) MGI PMID:10429671 NCBI chr 7:126,731,404...126,743,785
Ensembl chr 7:126,731,404...126,736,995 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IMP (PMID:7630421) MGI PMID:7630421 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IMP (PMID:16223777) MGI PMID:16223777 NCBI chr 2:73,646,853...73,723,094
Ensembl chr 2:73,646,853...73,722,983 		JBrowse link
G Cd1d1 CD1d1 antigen involved_in IMP (MGI:87097|PMID:9133426) CACAO PMID:9133426 MGI:87097 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Fosl2 fos-like antigen 2 acts_upstream_of_or_within IMP (PMID:19620306) MGI PMID:19620306 NCBI chr 5:32,292,599...32,315,184
Ensembl chr 5:32,293,145...32,315,186 		JBrowse link
G Itk IL2 inducible T cell kinase acts_upstream_of_or_within
involved_in		 IMP
IGI
IBA		 (PMID:18292523) MGI
GO_Central		 PMID:18292523 GO_REF:0000033 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within IMP (PMID:14684827) MGI PMID:14684827 NCBI chr10:60,113,436...60,138,379
Ensembl chr10:60,113,449...60,138,376 		JBrowse link
G Traj18 T cell receptor alpha joining 18 involved_in IMP (PMID:26423156) MGI PMID:26423156 NCBI chr14:54,438,234...54,438,299
Ensembl chr14:54,438,234...54,438,299 		JBrowse link
G Txk TXK tyrosine kinase acts_upstream_of_or_within IGI (PMID:18292523) MGI PMID:18292523 NCBI chr 5:72,853,321...72,910,337
Ensembl chr 5:72,853,321...72,910,120 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:5449456|PMID:23105140) UniProt PMID:23105140 MGI:5449456 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zfp683 zinc finger protein 683 acts_upstream_of_or_within IMP (PMID:22885984) MGI PMID:22885984 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
NK T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
positive regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:11067867), (PMID:16670300)
(PMID:11067867), (PMID:12163459), (PMID:16670300)		 MGI PMID:11067867 PMID:12163459 PMID:16670300 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:3695957|PMID:15855276) BHF-UCL PMID:15855276 MGI:3695957 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (PMID:15064401) MGI PMID:15064401 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Nkap NFKB activating protein involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Pnp purine-nucleoside phosphorylase acts_upstream_of_or_within ISO
IMP		 (PMID:10859343), (PMID:16964310)
(PMID:9122228)		 MGI PMID:9122228 PMID:10859343 PMID:16964310 GO_REF:0000008 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869 		JBrowse link
G Pnp2 purine-nucleoside phosphorylase 2 acts_upstream_of_or_within ISO (PMID:16964310) MGI PMID:16964310 NCBI chr14:51,193,598...51,202,206
Ensembl chr14:51,193,449...51,202,206 		JBrowse link
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3029054|PMID:14764698) BHF-UCL PMID:14764698 MGI:3029054 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IGI (PMID:9275205) MGI PMID:9275205 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IMP
IGI		 (PMID:9208839)
(PMID:7630421)
(PMID:9275205)		 MGI PMID:7630421 PMID:9208839 PMID:9275205 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
positive regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd83 CD83 antigen acts_upstream_of_or_within IMP (PMID:15322158) MGI PMID:15322158 NCBI chr13:43,938,661...43,956,608
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IDA (PMID:17028180) MGI PMID:17028180 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within IMP (PMID:16227612) MGI PMID:16227612 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4819294|PMID:20639485) BHF-UCL PMID:20639485 MGI:4819294 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within		 TAS
IMP		 (MGI:3795336|PMID:18368049)
(PMID:16301745), (PMID:18573908)
(PMID:12612578)
(PMID:16275384)		 UniProt
MGI		 PMID:12612578 PMID:16275384 PMID:16301745 PMID:18368049 PMID:18573908 MGI:3795336 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gimap3 GTPase, IMAP family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:48,741,398...48,747,785
Ensembl chr 6:48,741,398...48,747,785 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 involved_in ISO RGD
MGI		 PMID:15778366 GO_REF:0000096 MGI:4417868 RGD:2303772 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:28467828) UniProt PMID:28467828 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of_or_within IMP (PMID:16227984) MGI PMID:16227984 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Klhl25 kelch-like 25 involved_in IDA
ISO		 (MGI:6765767|PMID:34491895) UniProt
MGI		 PMID:34491895 GO_REF:0000119 MGI:4834177 MGI:6765767 NCBI chr 7:75,498,086...75,523,881
Ensembl chr 7:75,498,058...75,523,879 		JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 involved_in ISO (PMID:20209097) UniProt PMID:20209097 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
positive regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core binding factor beta involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,366,999...51,372,709
Ensembl chr10:51,367,052...51,372,707 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,356,757...51,362,417
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Runx1 runt related transcription factor 1 involved_in IDA (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
positive regulation of cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90aa1 heat shock protein 90, alpha (cytosolic), class A member 1 involved_in TAS (MGI:3687888|PMID:12855682) UniProt PMID:12855682 MGI:3687888 NCBI chr12:110,657,470...110,662,829
Ensembl chr12:110,657,039...110,669,162 		JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:5,427,551...5,438,731
Ensembl chr19:5,427,551...5,438,731 		JBrowse link
G Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:19187795 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2317344 NCBI chr17:57,412,113...57,414,757
Ensembl chr17:57,412,325...57,414,757 		JBrowse link
positive regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap3 GTPase, IMAP family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:48,741,398...48,747,785
Ensembl chr 6:48,741,398...48,747,785 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 involved_in ISO RGD
MGI		 PMID:11859104 GO_REF:0000096 MGI:4417868 RGD:625608 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of_or_within IMP (PMID:7807014) MGI PMID:7807014 NCBI chr 4:129,442,142...129,467,415
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of_or_within IMP (PMID:7807014) MGI PMID:7807014 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA (PMID:21300860) MGI PMID:21300860 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr 1:133,310,038...133,352,159
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IMP (PMID:7477352)
(PMID:8790395)		 MGI PMID:7477352 PMID:8790395 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
positive regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (PMID:17210642) MGI PMID:17210642 NCBI chr 7:80,104,839...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene involved_in IMP (MGI:3615850|PMID:15964995) HGNC-UCL PMID:15964995 MGI:3615850 NCBI chr 2:18,681,953...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (PMID:16230479) MGI PMID:16230479 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Il1a interleukin 1 alpha involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892 		JBrowse link
G Il1b interleukin 1 beta involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:8590311 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:7401228 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of_or_within IMP (PMID:11894098) MGI PMID:11894098 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3029054|PMID:14764698), (MGI:3847177|PMID:19273836) BHF-UCL PMID:14764698 PMID:19273836 MGI:3029054 MGI:3847177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
positive regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd46 CD46 antigen, complement regulatory protein involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:194,721,279...194,781,149
Ensembl chr 1:194,719,134...194,774,557 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:27591323) UniProt PMID:27591323 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Il23a interleukin 23, alpha subunit p19 involved_in IDA (MGI:3027369|PMID:14688363) BHF-UCL PMID:14688363 MGI:3027369 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1, cytosolic involved_in IMP (MGI:6119963|PMID:29230018) UniProt PMID:29230018 MGI:6119963 NCBI chr 2:172,994,866...173,001,067
Ensembl chr 2:172,994,841...173,001,066 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
positive regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit acts_upstream_of_or_within IMP (PMID:14557411) MGI PMID:14557411 NCBI chr13:94,492,332...94,702,838
Ensembl chr13:94,495,468...94,702,825 		JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit acts_upstream_of_or_within IMP (PMID:14557411) MGI PMID:14557411 NCBI chr10:80,542,790...80,578,137
Ensembl chr10:80,542,790...80,578,098 		JBrowse link
G Cd1d1 CD1d1 antigen acts_upstream_of_or_within IMP (PMID:9133426)
(PMID:10201995)		 MGI PMID:9133426 PMID:10201995 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (PMID:16973387) MGI PMID:16973387 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in IMP (MGI:3807724|PMID:18660811) UniProt PMID:18660811 MGI:3807724 NCBI chr 9:48,563,097...48,747,525
Ensembl chr 9:48,565,597...48,747,522 		JBrowse link
positive regulation of pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb1 zinc finger and BTB domain containing 1 involved_in IMP (MGI:5446979|PMID:22753936) UniProt PMID:22753936 MGI:5446979 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
positive regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy/beclin 1 regulator 1 involved_in IMP
ISO		 (MGI:6284097|PMID:30513302) UniProt
MGI		 PMID:30513302 GO_REF:0000119 MGI:4834177 MGI:6284097 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Btn2a2 butyrophilin, subfamily 2, member A2 acts_upstream_of_or_within IDA (PMID:23589618) MGI PMID:23589618 NCBI chr13:23,661,219...23,673,028
Ensembl chr13:23,661,846...23,673,027 		JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within IMP (PMID:23793062) MGI PMID:23793062 NCBI chr 8:106,412,642...106,424,827
Ensembl chr 8:106,412,906...106,424,819 		JBrowse link
G Cd46 CD46 antigen, complement regulatory protein involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:194,721,279...194,781,149
Ensembl chr 1:194,719,134...194,774,557 		JBrowse link
G Dusp10 dual specificity phosphatase 10 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:183,766,575...183,807,833
Ensembl chr 1:183,745,499...183,807,833 		JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (PMID:30513302) UniProt PMID:30513302 NCBI chr10:42,057,841...42,152,691
Ensembl chr10:42,057,837...42,152,751 		JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of_or_within		 ISO
IMP
IDA		 (PMID:15780990)
(PMID:12522256), (PMID:15100250), (PMID:16769892), (PMID:17028180)		 MGI PMID:12522256 PMID:15100250 PMID:15780990 PMID:16769892 PMID:17028180 GO_REF:0000119 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 involved_in ISO (PMID:20448110) BHF-UCL PMID:20448110 NCBI chr17:37,581,094...37,585,380
Ensembl chr17:37,581,111...37,585,375 		JBrowse link
G Il2 interleukin 2 involved_in ISO RGD
MGI		 PMID:6233372 GO_REF:0000096 MGI:4417868 RGD:1600097 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in IDA
ISO		 (MGI:5753024|PMID:25778793) UniProt
MGI		 PMID:25778793 GO_REF:0000119 MGI:4834177 MGI:5753024 NCBI chr 7:44,485,712...44,490,233
Ensembl chr 7:44,465,811...44,490,233 		JBrowse link
G Il4i1b interleukin 4 induced 1B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:44,465,794...44,490,228
Ensembl chr 7:44,465,811...44,490,233 		JBrowse link
G Kat5 K(lysine) acetyltransferase 5 involved_in IMP
ISO		 (MGI:5576410|PMID:24835996) UniProt
MGI		 PMID:24835996 GO_REF:0000119 MGI:4834177 MGI:5576410 NCBI chr19:5,653,042...5,661,584
Ensembl chr19:5,653,042...5,660,265 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,366,999...51,372,709
Ensembl chr10:51,367,052...51,372,707 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:51,356,757...51,362,417
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
G Mir214 microRNA 214 ISO RGD PMID:30287503 RGD:38549580 NCBI chr 1:162,050,937...162,051,046
Ensembl chr 1:162,050,937...162,051,046 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Sox12 SRY (sex determining region Y)-box 12 involved_in IMP (MGI:6203502|PMID:30190287) UniProt PMID:30190287 MGI:6203502 NCBI chr 2:152,235,531...152,239,966
Ensembl chr 2:152,235,531...152,239,983 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:60,182,630...60,266,073
Ensembl chr10:60,182,630...60,208,463 		JBrowse link
positive regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:142,888,870...142,892,509
Ensembl chr 5:142,888,870...142,892,509 		JBrowse link
G Actl6a actin-like 6A involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 3:32,762,695...32,781,122
Ensembl chr 3:32,760,447...32,781,122 		JBrowse link
G Actl6b actin-like 6B involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:137,551,784...137,567,844
Ensembl chr 5:137,551,779...137,567,844 		JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:7731963)
(PMID:9478961)		 MGI PMID:7731963 PMID:9478961 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Arid1a AT-rich interaction domain 1A involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080 		JBrowse link
G Arid1b AT-rich interaction domain 1B involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr17:5,044,481...5,397,931
Ensembl chr17:5,044,607...5,397,931 		JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr15:96,185,403...96,303,344
Ensembl chr15:96,185,399...96,302,873 		JBrowse link
G Bad BCL2-associated agonist of cell death acts_upstream_of_or_within IMP (PMID:12431371) MGI PMID:12431371 NCBI chr19:6,919,229...6,929,273
Ensembl chr19:6,919,229...6,929,267 		JBrowse link
G Brd7 bromodomain containing 7 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 8:89,056,522...89,089,249
Ensembl chr 8:89,057,667...89,088,822 		JBrowse link
G Cd27 CD27 antigen involved_in NAS (MGI:2154603|PMID:11728341) UniProt PMID:11728341 MGI:2154603 NCBI chr 6:125,209,583...125,214,014
Ensembl chr 6:125,209,585...125,213,973 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (PMID:9432982)
(PMID:7679955), (PMID:8598040)		 MGI PMID:7679955 PMID:8598040 PMID:9432982 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase acts_upstream_of_or_within IMP (PMID:16501569) MGI PMID:16501569 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573 		JBrowse link
G Gata3 GATA binding protein 3 involved_in IDA (MGI:5285154|PMID:20696860) UniProt PMID:20696860 MGI:5285154 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G H2-Aa histocompatibility 2, class II antigen A, alpha acts_upstream_of_or_within IDA (PMID:8598041) MGI PMID:8598041 NCBI chr17:34,501,718...34,506,797
Ensembl chr17:34,501,718...34,506,797 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa acts_upstream_of_or_within IMP (PMID:8598041), (PMID:9432982)
(PMID:8598040)
(PMID:8638109)		 MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G Il12a interleukin 12a acts_upstream_of_or_within IGI (PMID:22968459) MGI PMID:22968459 NCBI chr 3:68,597,977...68,605,881
Ensembl chr 3:68,597,977...68,605,880 		JBrowse link
G Il1rl2 interleukin 1 receptor-like 2 acts_upstream_of_or_within IMP (PMID:22968459) MGI PMID:22968459 NCBI chr 1:40,363,697...40,406,722
Ensembl chr 1:40,363,770...40,406,722 		JBrowse link
G Il2 interleukin 2 involved_in ISO RGD
MGI		 PMID:9352365 GO_REF:0000096 MGI:4417868 RGD:1600138 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il2ra interleukin 2 receptor, alpha chain involved_in ISO RGD
MGI		 PMID:9352365 GO_REF:0000096 MGI:4417868 RGD:1600138 NCBI chr 2:11,647,603...11,698,005
Ensembl chr 2:11,647,618...11,698,004 		JBrowse link
G Il36b interleukin 36B acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:22968459) MGI
GO_Central		 PMID:22968459 GO_REF:0000033 NCBI chr 2:24,043,184...24,050,115
Ensembl chr 2:24,043,173...24,050,531 		JBrowse link
G Il4 interleukin 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Il7 interleukin 7 acts_upstream_of_or_within IDA (PMID:12431371) MGI PMID:12431371 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820 		JBrowse link
G Mdk midkine involved_in IMP (MGI:5897914|PMID:28183532) UniProt PMID:28183532 MGI:5897914 NCBI chr 2:91,760,149...91,762,348
Ensembl chr 2:91,760,150...91,762,642 		JBrowse link
G Pbrm1 polybromo 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr14:30,741,095...30,843,549
Ensembl chr14:30,741,095...30,843,549 		JBrowse link
G Phf10 PHD finger protein 10 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr17:15,165,269...15,181,550
Ensembl chr17:15,165,271...15,181,535 		JBrowse link
G Pik3r6 phosphoinositide-3-kinase regulatory subunit 5 involved_in IMP (MGI:3641361|PMID:12707323) CACAO PMID:12707323 MGI:3641361 NCBI chr11:68,393,845...68,443,524
Ensembl chr11:68,393,845...68,443,524 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of_or_within IMP (PMID:8666928) MGI PMID:8666928 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 involved_in IMP (MGI:50458|PMID:1547488) CACAO PMID:1547488 MGI:50458 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rhoh ras homolog family member H involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA (PMID:21300860) MGI PMID:21300860 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr19:26,582,578...26,755,721
Ensembl chr19:26,582,450...26,755,722 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 9:109,961,129...110,069,773
Ensembl chr 9:109,946,776...110,069,246 		JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr10:128,294,823...128,326,460
Ensembl chr10:128,295,117...128,326,351 		JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr15:99,600,175...99,611,872
Ensembl chr15:99,600,010...99,611,872 		JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr11:106,153,997...106,163,810
Ensembl chr11:106,154,005...106,163,798 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:24,797,620...24,829,649
Ensembl chr 5:24,795,816...24,829,409 		JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr11:99,099,873...99,121,843
Ensembl chr11:99,099,873...99,121,843 		JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of_or_within IDA (PMID:19723499) MGI PMID:19723499 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within ISO
IMP		 (PMID:9208839) MGI PMID:9208839 GO_REF:0000008 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in IMP (MGI:5300225|PMID:22201126) UniProt PMID:22201126 MGI:5300225 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 involved_in IMP (MGI:5790022|PMID:26522984) UniProt PMID:26522984 MGI:5790022 NCBI chr14:25,458,299...25,667,167
Ensembl chr14:25,459,609...25,667,167 		JBrowse link
positive regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:11067867), (PMID:12163459), (PMID:16670300)
(PMID:11435465)
(PMID:11067867), (PMID:16670300)		 MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adam8 a disintegrin and metallopeptidase domain 8 involved_in IDA (MGI:4836302|PMID:20856819) BHF-UCL PMID:20856819 MGI:4836302 NCBI chr 7:139,558,845...139,573,016
Ensembl chr 7:139,558,845...139,572,475 		JBrowse link
G Egr3 early growth response 3 acts_upstream_of_or_within IMP (PMID:21737317) MGI PMID:21737317 NCBI chr14:70,314,766...70,320,062
Ensembl chr14:70,314,652...70,320,063 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of_or_within IMP (PMID:9252128)
(PMID:9916699)		 MGI PMID:9252128 PMID:9916699 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within IMP (PMID:9215626) MGI PMID:9215626 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 involved_in IMP (MGI:1891792|PMID:11017103) CACAO PMID:11017103 MGI:1891792 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IMP (PMID:21737317) MGI PMID:21737317 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 involved_in IMP (MGI:5432321|PMID:22561606) UniProt PMID:22561606 MGI:5432321 NCBI chr10:130,158,696...130,199,338
Ensembl chr10:130,158,739...130,199,980 		JBrowse link
G Vnn1 vanin 1 involved_in IDA (MGI:84472|PMID:8934567) BHF-UCL PMID:8934567 MGI:84472 NCBI chr10:23,770,586...23,781,242
Ensembl chr10:23,770,586...23,781,241 		JBrowse link
G Zfp609 zinc finger protein 609 involved_in TAS (MGI:5908329|PMID:23076336) UniProt PMID:23076336 MGI:5908329 NCBI chr 9:65,598,860...65,735,004
Ensembl chr 9:65,599,673...65,734,846 		JBrowse link
positive regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Ccl19 C-C motif chemokine ligand 19 involved_in IDA (MGI:3576832|PMID:15845453) BHF-UCL PMID:15845453 MGI:3576832 NCBI chr 4:42,754,525...42,756,558
Ensembl chr 4:42,754,525...42,756,577 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 involved_in IC (MGI:3699670|PMID:14662900) BHF-UCL PMID:14662900 MGI:3699670 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594 		JBrowse link
G Ccr7 C-C motif chemokine receptor 7 involved_in IC (MGI:3576832|PMID:15845453) BHF-UCL PMID:15845453 MGI:3576832 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IGI
IMP		 (PMID:16424184) MGI PMID:16424184 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in TAS (MGI:5319622|PMID:11244049) UniProt PMID:11244049 MGI:5319622 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of_or_within IMP (PMID:11894097) MGI PMID:11894097 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IDA (MGI:3687909|PMID:12242343) UniProt PMID:12242343 MGI:3687909 NCBI chr17:87,414,707...87,445,153
Ensembl chr17:87,415,107...87,445,267 		JBrowse link
positive regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malt1 MALT1 paracaspase involved_in IDA (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr18:65,564,010...65,612,138
Ensembl chr18:65,564,009...65,612,138 		JBrowse link
G Mir326 microRNA 326 acts_upstream_of_or_within IDA
IMP		 (PMID:19838199) MGI PMID:19838199 NCBI chr 7:99,201,476...99,201,570
Ensembl chr 7:99,201,476...99,201,570 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in IMP (MGI:5689221|PMID:26098997) UniProt PMID:26098997 MGI:5689221 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782 		JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd2 bromodomain containing 2 involved_in IDA
ISO		 (MGI:6106706|PMID:28262505) UniProt
MGI		 PMID:28262505 GO_REF:0000119 MGI:4834177 MGI:6106706 NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608 		JBrowse link
G Brd4 bromodomain containing 4 involved_in IMP (MGI:6106706|PMID:28262505) UniProt PMID:28262505 MGI:6106706 NCBI chr17:32,415,246...32,503,717
Ensembl chr17:32,415,248...32,503,696 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:81,470,329...81,536,273
Ensembl chr15:81,469,552...81,536,278 		JBrowse link
G Il23a interleukin 23, alpha subunit p19 involved_in IDA
IBA		 (MGI:3851279|PMID:19501566) BHF-UCL
GO_Central		 PMID:19501566 GO_REF:0000033 MGI:3851279 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621 		JBrowse link
positive regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il18 interleukin 18 involved_in IMP (MGI:3608083|PMID:12829194) BHF-UCL PMID:12829194 MGI:3608083 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of_or_within IGI (PMID:16424184) MGI PMID:16424184 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within IDA (PMID:12594267) MGI PMID:12594267 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in IMP (MGI:5689221|PMID:26098997) UniProt PMID:26098997 MGI:5689221 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782 		JBrowse link
G Prkcz protein kinase C, zeta involved_in IMP (MGI:3584076|PMID:15987782) UniProt PMID:15987782 MGI:3584076 NCBI chr 4:155,344,579...155,445,856
Ensembl chr 4:155,344,586...155,445,818 		JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4943387|PMID:18354165) BHF-UCL PMID:18354165 MGI:4943387 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
positive regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shb src homology 2 domain-containing transforming protein B acts_upstream_of_or_within IMP (PMID:24645804) MGI PMID:24645804 NCBI chr 4:45,423,278...45,530,804
Ensembl chr 4:45,423,278...45,532,470 		JBrowse link
positive T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:17998389) MGI PMID:17998389 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:23334952) MGI PMID:23334952 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Themis thymocyte selection associated involved_in IMP (MGI:4352756|PMID:19597499), (MGI:4352757|PMID:19597498), (MGI:4352758|PMID:19597497), (MGI:4361774|PMID:19805304) UniProt PMID:19597497 PMID:19597498 PMID:19597499 PMID:19805304 MGI:4352756 MGI:4352757 MGI:4352758 MGI:4361774 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 antigen acts_upstream_of_or_within IMP (PMID:9133426) MGI PMID:9133426 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Cd3d CD3 antigen, delta polypeptide involved_in IMP
IBA		 (MGI:87267|PMID:9135151) UniProt
GO_Central		 PMID:9135151 GO_REF:0000033 MGI:87267 NCBI chr 9:44,893,067...44,898,350
Ensembl chr 9:44,893,084...44,898,637 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd3g CD3 antigen, gamma polypeptide involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:44,880,870...44,891,729
Ensembl chr 9:44,880,870...44,891,729 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (PMID:7679955), (PMID:8598040)
(PMID:9432982)		 MGI PMID:7679955 PMID:8598040 PMID:9432982 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 acts_upstream_of_or_within IMP (PMID:12871644) MGI PMID:12871644 NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa acts_upstream_of_or_within IMP (PMID:8598040)
(PMID:8598041), (PMID:9432982)
(PMID:8638109)		 MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (PMID:15064401) MGI PMID:15064401 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 involved_in IMP (MGI:3820023|PMID:17579027) UniProt PMID:17579027 MGI:3820023 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
G Ptprc protein tyrosine phosphatase receptor type C acts_upstream_of_or_within IMP (PMID:8666928) MGI PMID:8666928 NCBI chr 1:137,990,601...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3834308|PMID:17227833) BHF-UCL PMID:17227833 MGI:3834308 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA
IMP		 (PMID:21300860)
(PMID:18408721)		 MGI PMID:18408721 PMID:21300860 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (PMID:21098124) MGI PMID:21098124 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G Stk11 serine/threonine kinase 11 acts_upstream_of_or_within IMP (PMID:21487392) MGI PMID:21487392 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within ISO
IMP		 (PMID:7630421) MGI PMID:7630421 GO_REF:0000008 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt3 FMS-like tyrosine kinase 3 acts_upstream_of_or_within IMP (PMID:7621074) MGI PMID:7621074 NCBI chr 5:147,267,551...147,337,299
Ensembl chr 5:147,267,551...147,337,299 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (PMID:19934022) MGI PMID:19934022 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in IMP (MGI:6508514|PMID:30171019) ARUK-UCL PMID:30171019 MGI:6508514 NCBI chr 2:90,912,750...90,946,104
Ensembl chr 2:90,912,735...90,946,101 		JBrowse link
regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in IMP (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chr 8:71,858,630...71,868,475
Ensembl chr 8:71,858,654...71,862,548 		JBrowse link
regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3rf1 SH3 domain containing ring finger 1 involved_in IMP (MGI:6158776|PMID:27084103) UniProt PMID:27084103 MGI:6158776 NCBI chr 8:61,677,117...61,918,327
Ensembl chr 8:61,676,906...61,849,105 		JBrowse link
regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (PMID:18776904) MGI PMID:18776904 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
regulation of extrathymic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR domain containing 1, with ZNF domain involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Zfp683 zinc finger protein 683 involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr3 early growth response 3 acts_upstream_of_or_within IDA (PMID:21737317) MGI PMID:21737317 NCBI chr14:70,314,766...70,320,062
Ensembl chr14:70,314,652...70,320,063 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IDA (PMID:21737317) MGI PMID:21737317 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 acts_upstream_of_or_within IDA (PMID:21737317) MGI PMID:21737317 NCBI chr 1:133,310,038...133,352,159
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Tcf7 transcription factor 7, T cell specific involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 antigen involved_in IMP (MGI:3759394|PMID:11550008) CACAO PMID:11550008 MGI:3759394 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 acts_upstream_of_or_within IDA (PMID:8405064) MGI PMID:8405064 NCBI chr 4:151,004,612...151,030,561
Ensembl chr 4:150,999,019...151,030,559 		JBrowse link
G Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 acts_upstream_of_or_within IDA (PMID:8405064) MGI PMID:8405064 NCBI chr17:57,412,113...57,414,757
Ensembl chr17:57,412,325...57,414,757 		JBrowse link
regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of_or_within IMP (PMID:15240675) MGI PMID:15240675 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR domain containing 1, with ZNF domain involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr10:44,313,170...44,404,579
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Zfp683 zinc finger protein 683 involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn1 forkhead box N1 involved_in IMP (MGI:5554515|PMID:24184560) UniProt PMID:24184560 MGI:5554515 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 antigen acts_upstream_of_or_within IGI (PMID:21245484) MGI PMID:21245484 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Ctla2a cytotoxic T lymphocyte-associated protein 2 alpha acts_upstream_of_or_within IMP (PMID:21245393) MGI PMID:21245393 NCBI chr13:61,081,969...61,084,439
Ensembl chr13:61,081,969...61,084,439 		JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (PMID:18725527) MGI PMID:18725527 NCBI chr12:104,654,001...104,718,331
Ensembl chr12:104,654,001...104,718,211 		JBrowse link
G Drosha drosha, ribonuclease type III acts_upstream_of_or_within IMP (PMID:18725527) MGI PMID:18725527 NCBI chr15:12,824,893...12,935,377
Ensembl chr15:12,824,901...12,935,377 		JBrowse link
G Fanca Fanconi anemia, complementation group A acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:24501220) MGI
GO_Central		 PMID:24501220 GO_REF:0000033 NCBI chr 8:123,993,033...124,045,390
Ensembl chr 8:123,995,039...124,045,315 		JBrowse link
G Fancd2 Fanconi anemia, complementation group D2 acts_upstream_of_or_within IMP (PMID:24501220) MGI PMID:24501220 NCBI chr 6:113,508,622...113,573,981
Ensembl chr 6:113,508,643...113,573,978 		JBrowse link
G Kat2a K(lysine) acetyltransferase 2A involved_in IMP (MGI:5926326|PMID:28424240) UniProt PMID:28424240 MGI:5926326 NCBI chr11:100,595,572...100,603,293
Ensembl chr11:100,595,572...100,603,291 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of_or_within IGI (PMID:21245484) MGI PMID:21245484 NCBI chr 4:129,442,142...129,467,415
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Sh2b3 SH2B adaptor protein 3 involved_in ISO RGD
MGI		 PMID:25776069 GO_REF:0000096 MGI:4417868 RGD:13442483 NCBI chr 5:121,953,544...121,975,706
Ensembl chr 5:121,953,551...121,975,709 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IGI (PMID:21245484) MGI PMID:21245484 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase involved_in IMP (MGI:5142352|PMID:21690296) UniProt PMID:21690296 MGI:5142352 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within IMP (PMID:7670465) MGI PMID:7670465 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:18228248) MGI PMID:18228248 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Card11 caspase recruitment domain family, member 11 acts_upstream_of_or_within IMP (PMID:12867038) MGI PMID:12867038 NCBI chr 5:140,858,109...140,986,398
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 involved_in IMP (MGI:5926947|PMID:28507030) UniProt PMID:28507030 MGI:5926947 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594 		JBrowse link
G Crtam cytotoxic and regulatory T cell molecule involved_in IMP (MGI:5581366|PMID:24687959) UniProt PMID:24687959 MGI:5581366 NCBI chr 9:40,880,987...40,915,922
Ensembl chr 9:40,880,987...40,915,924 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within IMP (PMID:23991089) MGI PMID:23991089 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Duxbl1 double homeobox B-like 1 acts_upstream_of_or_within IDA (PMID:17911620) MGI PMID:17911620 NCBI chr14:25,979,011...25,990,590
Ensembl chr14:25,979,001...25,990,512 		JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within IMP (PMID:6610701) MGI PMID:6610701 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G H2-Oa histocompatibility 2, O region alpha locus acts_upstream_of_or_within IMP (PMID:11069069) MGI PMID:11069069 NCBI chr17:34,311,353...34,314,286
Ensembl chr17:34,311,314...34,314,208 		JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within IMP (PMID:10704459) MGI PMID:10704459 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IMP (MGI:6094929|PMID:28792938) UniProt PMID:28792938 MGI:6094929 NCBI chr14:52,532,298...52,548,555
Ensembl chr14:52,532,298...52,542,585 		JBrowse link
G Prelid1 PRELI domain containing 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:55,469,868...55,473,085
Ensembl chr13:55,468,313...55,473,085 		JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within IGI (PMID:18684012) MGI PMID:18684012 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within IGI (PMID:18684012) MGI PMID:18684012 NCBI chr 4:59,905,899...59,915,056
Ensembl chr 4:59,905,126...59,915,056 		JBrowse link
G Tbx21 T-box 21 involved_in IMP (MGI:5142352|PMID:21690296) UniProt PMID:21690296 MGI:5142352 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO RGD
MGI		 PMID:3876160 GO_REF:0000096 MGI:4417868 RGD:152995412 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adrm1 adhesion regulating molecule 1 26S proteasome ubiquitin receptor involved_in IMP (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chr 2:179,813,381...179,818,076
Ensembl chr 2:179,813,278...179,818,079 		JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in IMP (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chr 8:71,858,630...71,868,475
Ensembl chr 8:71,858,654...71,862,548 		JBrowse link
G Clptm1 cleft lip and palate associated transmembrane protein 1 involved_in IMP (MGI:1095293|PMID:9218588) BHF-UCL PMID:9218588 MGI:1095293 NCBI chr 7:19,365,505...19,398,955
Ensembl chr 7:19,365,496...19,398,958 		JBrowse link
G Foxn1 forkhead box N1 acts_upstream_of_or_within IMP (PMID:22072979) MGI PMID:22072979 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 NOT|involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within IGI (PMID:24043312) MGI PMID:24043312 NCBI chr17:80,701,181...80,787,882
Ensembl chr17:80,701,180...80,787,882 		JBrowse link
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 acts_upstream_of_or_within IGI (PMID:24043312) MGI PMID:24043312 NCBI chr12:69,630,535...69,728,626
Ensembl chr12:69,630,536...69,728,626 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (PMID:9389660)
(PMID:9126927)		 MGI PMID:9126927 PMID:9389660 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27 interleukin 27 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 7:126,188,181...126,194,197
Ensembl chr 7:126,188,182...126,194,113 		JBrowse link
regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 C-C motif chemokine ligand 20 NOT|involved_in IDA (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chr 1:83,094,487...83,096,888
Ensembl chr 1:83,094,487...83,096,888 		JBrowse link
G Ccr6 C-C motif chemokine receptor 6 NOT|involved_in IMP (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
G Mir301 microRNA 301 acts_upstream_of_or_within IMP (PMID:22517757) MGI PMID:22517757 NCBI chr11:87,003,830...87,003,915
Ensembl chr11:87,003,830...87,003,915 		JBrowse link
regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (PMID:18776904) MGI PMID:18776904 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:15322540) UniProt PMID:15322540 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (PMID:18776904) MGI PMID:18776904 NCBI chr 3:89,284,953...89,300,976
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 antigen involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Foxp3 forkhead box P3 involved_in
acts_upstream_of		 ISO
IDA		 (PMID:16769892), (PMID:17028180) MGI PMID:16769892 PMID:17028180 GO_REF:0000119 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in
acts_upstream_of_or_within		 ISO
IMP
IDA		 (PMID:17481928)
(PMID:15100250)		 MGI PMID:15100250 PMID:17481928 GO_REF:0000119 MGI:4834177 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Usp44 ubiquitin specific peptidase 44 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:93,655,831...93,696,792
Ensembl chr10:93,667,417...93,693,950 		JBrowse link
T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of IMP (PMID:11067867), (PMID:16670300)
(PMID:11435465)
(PMID:11067867), (PMID:12163459), (PMID:16670300)		 MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adam17 a disintegrin and metallopeptidase domain 17 involved_in IMP (MGI:3828349|PMID:17371977) BHF-UCL PMID:17371977 MGI:3828349 NCBI chr12:21,373,510...21,423,633
Ensembl chr12:21,373,510...21,423,633 		JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (PMID:16025118) MGI PMID:16025118 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G B2m beta-2 microglobulin acts_upstream_of_or_within IGI (PMID:18776904) MGI PMID:18776904 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:16670294) MGI PMID:16670294 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (PMID:8170972), (PMID:9028316) MGI PMID:8170972 PMID:9028316 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (PMID:23334952) MGI PMID:23334952 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide ISO RGD PMID:11896936 RGD:2313407 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cdk6 cyclin dependent kinase 6 acts_upstream_of_or_within IMP (PMID:21508411) MGI PMID:21508411 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IMP (PMID:16025118) MGI PMID:16025118 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 acts_upstream_of_or_within IMP (PMID:15879105) MGI PMID:15879105 NCBI chr16:4,501,934...4,525,559
Ensembl chr16:4,457,853...4,525,559 		JBrowse link
G Fadd Fas associated via death domain involved_in IMP (MGI:5291865|PMID:21876153) UniProt PMID:21876153 MGI:5291865 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (PMID:11265645) MGI PMID:11265645 NCBI chr 1:64,769,717...64,776,907
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Fzd7 frizzled class receptor 7 acts_upstream_of_or_within IMP (PMID:11265645) MGI PMID:11265645 NCBI chr 1:59,521,306...59,526,114
Ensembl chr 1:59,521,583...59,526,114 		JBrowse link
G Fzd8 frizzled class receptor 8 acts_upstream_of_or_within IMP (PMID:11265645) MGI PMID:11265645 NCBI chr18:9,212,856...9,216,201
Ensembl chr18:9,212,163...9,218,136 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP
IGI		 (PMID:8945476)
(PMID:14670303)
(PMID:19934022)
(PMID:18776904)		 MGI PMID:8945476 PMID:14670303 PMID:18776904 PMID:19934022 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within IMP (PMID:22665763) MGI PMID:22665763 NCBI chr 3:89,110,235...89,119,944
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (PMID:15855276) MGI PMID:15855276 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of IMP (PMID:9916699)
(PMID:9252128)		 MGI PMID:9252128 PMID:9916699 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of IMP (PMID:9215626) MGI PMID:9215626 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Jmjd6 jumonji domain containing 6 acts_upstream_of_or_within IMP (PMID:14715629) MGI PMID:14715629 NCBI chr11:116,728,258...116,734,593
Ensembl chr11:116,728,258...116,734,275 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within IMP (PMID:19164599) MGI PMID:19164599 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985 		JBrowse link
G Mpzl2 myelin protein zero-like 2 acts_upstream_of_or_within IMP (PMID:19851463) MGI PMID:19851463 NCBI chr 9:44,951,595...44,965,341
Ensembl chr 9:44,951,097...44,965,313 		JBrowse link
G Mr1 major histocompatibility complex, class I-related involved_in IMP (MGI:3664456|PMID:12634786) UniProt PMID:12634786 MGI:3664456 NCBI chr 1:155,003,620...155,022,560
Ensembl chr 1:155,003,023...155,022,560 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 acts_upstream_of_or_within IMP (PMID:17640884) MGI PMID:17640884 NCBI chr15:89,239,920...89,257,030
Ensembl chr15:89,239,922...89,257,029 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within IMP (PMID:11030619) MGI PMID:11030619 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta acts_upstream_of IDA (PMID:11931770) MGI PMID:11931770 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Nkap NFKB activating protein acts_upstream_of_or_within IMP (PMID:20610818) MGI PMID:20610818 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (PMID:9768755) MGI PMID:9768755 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in IMP (PMID:27657535) MGI PMID:27657535 NCBI chr13:55,612,080...55,620,968
Ensembl chr13:55,612,080...55,620,967 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 acts_upstream_of_or_within IMP (PMID:31915251) MGI PMID:31915251 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Rabl3 RAB, member RAS oncogene family-like 3 involved_in IMP (MGI:6405642|PMID:32220963) UniProt PMID:32220963 MGI:6405642 NCBI chr16:37,360,220...37,392,747
Ensembl chr16:37,360,247...37,392,747 		JBrowse link
G Rag1 recombination activating 1 involved_in
acts_upstream_of_or_within		 IMP (MGI:50458|PMID:1547488)
(PMID:9215624)		 UniProt
MGI		 PMID:1547488 PMID:9215624 MGI:50458 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 involved_in IMP (MGI:50458|PMID:1547488) UniProt PMID:1547488 MGI:50458 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in IGI (MGI:5291865|PMID:21876153) UniProt PMID:21876153 MGI:5291865 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IMP (PMID:15247480) MGI PMID:15247480 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within IGI
IMP		 (PMID:16357222) MGI PMID:16357222 NCBI chr 4:86,772,336...86,775,604
Ensembl chr 4:86,772,897...86,775,649 		JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of		 IMP (MGI:3847177|PMID:19273836)
(PMID:10981962)		 BHF-UCL
MGI		 PMID:10981962 PMID:19273836 MGI:3847177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within IGI (PMID:15294943) MGI PMID:15294943 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within IMP (PMID:18958875) MGI PMID:18958875 NCBI chr10:80,245,375...80,269,814
Ensembl chr10:80,245,348...80,269,481 		JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 acts_upstream_of IMP
IDA		 (PMID:28598420) MGI PMID:28598420 NCBI chr10:130,158,696...130,199,338
Ensembl chr10:130,158,739...130,199,980 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (PMID:16357222) MGI PMID:16357222 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IDA (PMID:11265645) MGI PMID:11265645 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IDA (PMID:11265645) MGI PMID:11265645 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 acts_upstream_of_or_within IMP (PMID:22201126) MGI PMID:22201126 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IGI
IMP		 (MGI:4818820|PMID:20622884) BHF-UCL
UniProt		 PMID:20622884 MGI:4818820 NCBI chr12:80,154,534...80,159,787
Ensembl chr12:80,154,528...80,159,787 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in IGI
IMP		 (MGI:4818820|PMID:20622884) BHF-UCL
UniProt		 PMID:20622884 MGI:4818820 NCBI chr17:84,491,352...84,495,375
Ensembl chr17:84,491,359...84,495,375 		JBrowse link
T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4d C-type lectin domain family 4, member d acts_upstream_of_or_within IMP (PMID:23602766) MGI PMID:23602766 NCBI chr 6:123,239,066...123,252,227
Ensembl chr 6:123,239,070...123,252,224 		JBrowse link
G Clec4e C-type lectin domain family 4, member e acts_upstream_of_or_within IMP (PMID:23602766) MGI PMID:23602766 NCBI chr 6:123,258,748...123,266,830
Ensembl chr 6:123,258,748...123,266,829 		JBrowse link
G Fcer1g Fc receptor, IgE, high affinity I, gamma polypeptide acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:23602766) MGI
GO_Central		 PMID:23602766 GO_REF:0000033 NCBI chr 1:171,057,141...171,061,918
Ensembl chr 1:171,057,141...171,061,934 		JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A involved_in IMP (MGI:3574161|PMID:15780988) UniProt PMID:15780988 MGI:3574161 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489 		JBrowse link
T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (PMID:8788039) MGI PMID:8788039 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Foxn1 forkhead box N1 involved_in IMP (MGI:5554515|PMID:24184560) UniProt PMID:24184560 MGI:5554515 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Il7 interleukin 7 acts_upstream_of_or_within IMP (PMID:9252127) MGI PMID:9252127 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (PMID:8788039) MGI PMID:8788039 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (PMID:8788039) MGI PMID:8788039 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Tcra T cell receptor alpha chain acts_upstream_of_or_within IMP (PMID:11120788) MGI PMID:11120788 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IMP (PMID:8788039) MGI PMID:8788039 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
T cell receptor V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (PMID:12717433) MGI PMID:12717433 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (PMID:10911993) MGI PMID:10911993 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (PMID:9768755) MGI PMID:9768755 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (PMID:9462507) MGI PMID:9462507 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd4 CD4 antigen involved_in ISS
ISO		 (MGI:1194481|PMID:9551897) UniProt
MGI		 PMID:9551897 GO_REF:0000119 MGI:1194481 MGI:4834177 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
T follicular helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IMP (MGI:5565031|PMID:24463518) UniProt PMID:24463518 MGI:5565031 NCBI chr 7:142,520,559...142,523,001
Ensembl chr 7:142,520,566...142,523,001 		JBrowse link
G Foxp1 forkhead box P1 involved_in IDA (MGI:5607369|PMID:24859450) UniProt PMID:24859450 MGI:5607369 NCBI chr 6:98,902,303...99,510,587
Ensembl chr 6:98,902,299...99,499,682 		JBrowse link
G Gpr183 G protein-coupled receptor 183 involved_in IMP (MGI:5787848|PMID:27147029) UniProt PMID:27147029 MGI:5787848 NCBI chr14:122,189,743...122,202,605
Ensembl chr14:122,189,963...122,202,607 		JBrowse link
G Il21 interleukin 21 involved_in IMP (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chr 3:37,276,908...37,286,785
Ensembl chr 3:37,276,908...37,286,785 		JBrowse link
G Il6 interleukin 6 involved_in IMP (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 acts_upstream_of_or_within IGI (PMID:23583643) MGI PMID:23583643 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915 		JBrowse link
T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracr2a calcium release activated channel regulator 2A involved_in IMP
ISO		 (MGI:6195365|PMID:29987160) UniProt
MGI		 PMID:29987160 GO_REF:0000119 MGI:4834177 MGI:6195365 NCBI chr 6:127,538,299...127,651,197
Ensembl chr 6:127,538,301...127,651,211 		JBrowse link
G Gadd45g growth arrest and DNA-damage-inducible 45 gamma acts_upstream_of_or_within TAS (PMID:12213961) MGI PMID:12213961 NCBI chr13:52,000,711...52,002,511
Ensembl chr13:52,000,714...52,002,504 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of IGI
IMP		 (PMID:16424184) MGI PMID:16424184 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Il18r1 interleukin 18 receptor 1 acts_upstream_of_or_within IMP (PMID:10227969) MGI PMID:10227969 NCBI chr 1:40,504,712...40,540,014
Ensembl chr 1:40,504,712...40,540,014 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of IGI (PMID:16424184) MGI PMID:16424184 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IDA (MGI:4834989|PMID:18579517) UniProt PMID:18579517 MGI:4834989 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (PMID:31182790) MGI PMID:31182790 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B acts_upstream_of_or_within IMP (PMID:16081776) MGI PMID:16081776 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363 		JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A involved_in IMP (MGI:3574161|PMID:15780988) UniProt PMID:15780988 MGI:3574161 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489 		JBrowse link
G Stat4 signal transducer and activator of transcription 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:52,026,265...52,146,348
Ensembl chr 1:52,026,307...52,146,348 		JBrowse link
G Tmem98 transmembrane protein 98 involved_in IDA (MGI:6294180|PMID:25946230) UniProt PMID:25946230 MGI:6294180 NCBI chr11:80,701,192...80,712,859
Ensembl chr11:80,701,001...80,712,859 		JBrowse link
T-helper 1 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4 interleukin 4 acts_upstream_of_or_within IGI (PMID:20706986) MGI PMID:20706986 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IMP (PMID:26410627) MGI PMID:26410627 NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140 		JBrowse link
G Spn sialophorin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:126,731,404...126,743,785
Ensembl chr 7:126,731,404...126,736,995 		JBrowse link
G Stat6 signal transducer and activator of transcription 6 acts_upstream_of_or_within IGI (PMID:20706986) MGI PMID:20706986 NCBI chr10:127,478,855...127,496,856
Ensembl chr10:127,478,855...127,496,826 		JBrowse link
G Tbx21 T-box 21 involved_in IDA (MGI:1354779|PMID:10761931) UniProt PMID:10761931 MGI:1354779 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper transcription factor, ATF-like involved_in IMP (MGI:4456325|PMID:20421391), (MGI:5004732|PMID:21572431) UniProt PMID:20421391 PMID:21572431 MGI:4456325 MGI:5004732 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IMP (MGI:5461233|PMID:23241884) UniProt PMID:23241884 MGI:5461233 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136 		JBrowse link
G Mir873a microRNA 873a acts_upstream_of_or_within_positive_effect ISO (PMID:28837808) MGI PMID:28837808 NCBI chr 4:36,668,510...36,668,586
Ensembl chr 4:36,668,510...36,668,586 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (PMID:20383124) MGI PMID:20383124 NCBI chr16:55,631,740...55,659,018
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Rora RAR-related orphan receptor alpha involved_in IMP (MGI:3772713|PMID:18164222) GO_Central PMID:18164222 MGI:3772713 NCBI chr 9:68,560,627...69,295,528
Ensembl chr 9:68,561,068...69,295,528 		JBrowse link
G Rorc RAR-related orphan receptor gamma involved_in
acts_upstream_of_or_within		 IMP
IDA		 (MGI:3692468|PMID:16990136), (MGI:3772713|PMID:18164222)
(PMID:20383124)
(PMID:18792410)		 GO_Central
MGI		 PMID:16990136 PMID:18164222 PMID:18792410 PMID:20383124 MGI:3692468 MGI:3772713 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper transcription factor, ATF-like involved_in IMP (MGI:3851267|PMID:19578362), (MGI:5448096|PMID:22983707) UniProt PMID:19578362 PMID:22983707 MGI:3851267 MGI:5448096 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861 		JBrowse link
G Il6 interleukin 6 involved_in IDA
IMP		 (MGI:6142555|PMID:27893700)
(MGI:3692468|PMID:16990136)		 UniProt PMID:16990136 PMID:27893700 MGI:3692468 MGI:6142555 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Il6ra interleukin 6 receptor, alpha involved_in IDA (MGI:6142555|PMID:27893700) UniProt PMID:27893700 MGI:6142555 NCBI chr 3:89,776,631...89,820,503
Ensembl chr 3:89,771,366...89,820,503 		JBrowse link
G Irf4 interferon regulatory factor 4 involved_in IMP (MGI:5448096|PMID:22983707) UniProt PMID:22983707 MGI:5448096 NCBI chr13:30,933,191...30,950,965
Ensembl chr13:30,933,209...30,950,959 		JBrowse link
G Ly9 lymphocyte antigen 9 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:171,416,172...171,434,917
Ensembl chr 1:171,416,192...171,434,978 		JBrowse link
G Otud5 OTU domain containing 5 acts_upstream_of_or_within IMP (PMID:25470037) MGI PMID:25470037 NCBI chr  X:7,705,852...7,742,861
Ensembl chr  X:7,707,603...7,742,865 		JBrowse link
G Slamf6 SLAM family member 6 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:171,745,002...171,776,525
Ensembl chr 1:171,745,082...171,780,737 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in IMP (MGI:5825383|PMID:28065600) UniProt PMID:28065600 MGI:5825383 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Batf basic leucine zipper transcription factor, ATF-like involved_in IMP (MGI:4456325|PMID:20421391), (MGI:5004732|PMID:21572431) UniProt PMID:20421391 PMID:21572431 MGI:4456325 MGI:5004732 NCBI chr12:85,733,494...85,755,861
Ensembl chr12:85,733,443...85,755,861 		JBrowse link
G Bcl3 B cell leukemia/lymphoma 3 acts_upstream_of_or_within IMP (PMID:16081776) MGI PMID:16081776 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of IGI (PMID:12594267) MGI PMID:12594267 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Gata3 GATA binding protein 3 involved_in
acts_upstream_of_or_within		 ISO
IDA		 (PMID:20706986) MGI PMID:20706986 GO_REF:0000119 MGI:4834177 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of IGI
IMP		 (PMID:16424184) MGI PMID:16424184 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within IDA (PMID:20706986) MGI PMID:20706986 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of IGI (PMID:16424184) MGI PMID:16424184 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Il6 interleukin 6 acts_upstream_of IDA (PMID:12594267) MGI PMID:12594267 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Kmt2a lysine (K)-specific methyltransferase 2A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:44,714,652...44,793,492
Ensembl chr 9:44,714,652...44,792,594 		JBrowse link
G Men1 multiple endocrine neoplasia 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:6,385,009...6,390,924
Ensembl chr19:6,385,009...6,390,921 		JBrowse link
G Myb myeloblastosis oncogene involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:21,000,829...21,036,883
Ensembl chr10:21,000,834...21,036,883 		JBrowse link
T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase, Cu++ transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:8434133) MGI PMID:8434133 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Il12b interleukin 12b involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:44,290,890...44,305,504
Ensembl chr11:44,290,890...44,304,860 		JBrowse link
G Pdp2 pyruvate dehydrogenase phosphatase catalytic subunit 2 involved_in IMP (MGI:6200169|PMID:30150402) UniProt PMID:30150402 MGI:6200169 NCBI chr 8:105,318,104...105,325,658
Ensembl chr 8:105,318,083...105,325,658 		JBrowse link
G Ptger4 prostaglandin E receptor 4 (subtype EP4) involved_in IDA (MGI:4353445|PMID:19465928) UniProt PMID:19465928 MGI:4353445 NCBI chr15:5,262,880...5,273,668
Ensembl chr15:5,236,142...5,273,668 		JBrowse link
G Rorc RAR-related orphan receptor gamma involved_in IMP (MGI:2686818|PMID:14691482) UniProt PMID:14691482 MGI:2686818 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Card11 caspase recruitment domain family, member 11 acts_upstream_of_or_within IMP (PMID:12867038) MGI PMID:12867038 NCBI chr 5:140,858,109...140,986,398
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (PMID:14670303) MGI PMID:14670303 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (PMID:14517551) MGI PMID:14517551 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Jag2 jagged 2 involved_in ISS
ISO		 (MGI:1342169|PMID:10383933) UniProt
MGI		 PMID:10383933 GO_REF:0000119 MGI:1342169 MGI:4834177 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IMP (PMID:9208839) MGI PMID:9208839 NCBI chr 1:36,800,912...36,821,899
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28576
    immune system process 3142
      leukocyte activation 1139
        lymphocyte activation 931
          lymphocyte differentiation 503
            T cell differentiation 357
              T cell differentiation in thymus + 108
              T cell differentiation involved in immune response + 92
              T cell lineage commitment + 35
              T cell selection + 61
              alpha-beta T cell differentiation + 149
              cytotoxic T cell differentiation + 6
              exhausted T cell differentiation 0
              extrathymic T cell differentiation + 5
              gamma-delta T cell differentiation + 20
              negative regulation of T cell differentiation + 58
              positive regulation of T cell differentiation + 133
              pro-T cell differentiation + 4
              regulation of T cell differentiation + 205
              regulatory T cell differentiation + 52
              somatic diversification of T cell receptor genes + 5
Path 2
Term Annotations click to browse term
  biological_process 28576
    developmental process 7377
      cellular developmental process 5064
        cell differentiation 5063
          cell development 3448
            hemopoiesis 1161
              leukocyte differentiation 751
                mononuclear cell differentiation 607
                  lymphocyte differentiation 503
                    T cell differentiation 357
                      T cell differentiation in thymus + 108
                      T cell differentiation involved in immune response + 92
                      T cell lineage commitment + 35
                      T cell selection + 61
                      alpha-beta T cell differentiation + 149
                      cytotoxic T cell differentiation + 6
                      exhausted T cell differentiation 0
                      extrathymic T cell differentiation + 5
                      gamma-delta T cell differentiation + 20
                      negative regulation of T cell differentiation + 58
                      positive regulation of T cell differentiation + 133
                      pro-T cell differentiation + 4
                      regulation of T cell differentiation + 205
                      regulatory T cell differentiation + 52
                      somatic diversification of T cell receptor genes + 5
paths to the root