Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lung disease | | ISO | CLEC4D (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21602193 | |
|
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lung disease | | ISO | CLEC4D (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21602193 | |
|
|
|
|
|
|
|
|
|
|
|
# | Reference Title | Reference Citation |
1. | The human C-type lectin CLECSF8 is a novel monocyte/macrophage endocytic receptor. | Arce I, etal., Eur J Immunol 2004 Jan;34(1):210-20. |
2. | Identification of lectin-like receptors expressed by antigen presenting cells and neutrophils and their mapping to a novel gene complex. | Flornes LM, etal., Immunogenetics 2004 Oct;56(7):506-17. Epub 2004 Sep 11. |
3. | MGDs mouse GO annotations | MGD data from the GO Consortium |
4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
5. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
6. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9660840 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:11841491 | PMID:12477932 | PMID:16141072 | PMID:16141073 | PMID:21308776 | PMID:21677750 | PMID:21873635 |
PMID:23118208 | PMID:23602766 | PMID:23709686 | PMID:23911656 | PMID:25068517 | PMID:25202022 | PMID:25674984 | PMID:25888641 | PMID:26140582 | PMID:26558717 | PMID:26667836 | PMID:27005451 |
PMID:27089465 | PMID:27280399 | PMID:27432944 | PMID:27872290 | PMID:28107361 | PMID:28988116 | PMID:29576482 | PMID:32540868 | PMID:34480018 | PMID:35920835 | PMID:36384075 | PMID:37799716 |
PMID:38170734 |
Clec4d (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CLEC4D (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Clec4d (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Clec4d (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CLEC4D (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LOC611536 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Clec4d (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LOC110258710 (Sus scrofa - pig) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
CLEC4D (Chlorocebus sabaeus - green monkey) |
|
.
Variants in Clec4d
346 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RefSeq Transcripts | NM_001163161 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_010819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC124563 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AF061272 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AI390740 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK089500 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK150926 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK155919 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK170692 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK171409 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC099471 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY350724 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466523 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000032240 ⟹ ENSMUSP00000032240 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000203421 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSMUST00000204826 ⟹ ENSMUSP00000145134 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_001163161 ⟹ NP_001156633 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | NM_010819 ⟹ NP_034949 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||
Sequence: |
Protein RefSeqs | NP_001156633 | (Get FASTA) | NCBI Sequence Viewer |
NP_034949 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAD05125 | (Get FASTA) | NCBI Sequence Viewer |
AAH99471 | (Get FASTA) | NCBI Sequence Viewer | |
BAC40905 | (Get FASTA) | NCBI Sequence Viewer | |
BAE29964 | (Get FASTA) | NCBI Sequence Viewer | |
BAE42436 | (Get FASTA) | NCBI Sequence Viewer | |
EDK99714 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000032240 | ||
ENSMUSP00000032240.3 | |||
ENSMUSP00000145134.2 | |||
GenBank Protein | Q9Z2H6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_034949 ⟸ NM_010819 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8C212 (UniProtKB/Swiss-Prot), Q9Z2H6 (UniProtKB/Swiss-Prot), Q4KL29 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001156633 ⟸ NM_001163161 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q3UBK0 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000032240 ⟸ ENSMUST00000032240 |
RefSeq Acc Id: | ENSMUSP00000145134 ⟸ ENSMUST00000204826 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9Z2H6-F1-model_v2 | AlphaFold | Q9Z2H6 | 1-219 | view protein structure |
RGD ID: | 6839115 | ||||||||
Promoter ID: | MM_KWN:47507 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour | ||||||||
Transcripts: | NM_001163161, NM_010819, UC009DQH.1, UC009DQI.1 | ||||||||
Position: |
|
RGD ID: | 6847982 | ||||||||
Promoter ID: | MM_ACW:42679 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour | ||||||||
Transcripts: | CLEC4D.JSEP07 | ||||||||
Position: |
|
RGD ID: | 6890946 | ||||||||
Promoter ID: | EPDNEW_M8924 | ||||||||
Type: | initiation region | ||||||||
Name: | Clec4d_1 | ||||||||
Description: | Mus musculus C-type lectin domain family 4, member d , transcriptvariant 2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | MGI:1298389 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000030144 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000032240 | ENTREZGENE |
ENSMUST00000032240.4 | UniProtKB/Swiss-Prot | |
ENSMUST00000204826.3 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.10.100.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | C-type_lectin-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
C-type_lectin-like/link_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
CD209-like_CTLD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
CTDL_fold | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:17474 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGD | MGI:1298389 | ENTREZGENE |
NCBI Gene | 17474 | ENTREZGENE |
PANTHER | C-TYPE LECTIN DOMAIN FAMILY 19 MEMBER A-RELATED | UniProtKB/TrEMBL |
CD209 ANTIGEN-LIKE PROTEIN C-LIKE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED | UniProtKB/TrEMBL | |
Pfam | Lectin_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Clec4d | PhenoGen |
PROSITE | C_TYPE_LECTIN_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SMART | CLECT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SSF56436 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0N4SVJ7_MOUSE | UniProtKB/TrEMBL |
CLC4D_MOUSE | UniProtKB/Swiss-Prot | |
Q3UBK0 | ENTREZGENE, UniProtKB/TrEMBL | |
Q4KL29 | ENTREZGENE, UniProtKB/TrEMBL | |
Q8C212 | ENTREZGENE | |
Q9Z2H6 | ENTREZGENE | |
UniProt Secondary | Q8C212 | UniProtKB/Swiss-Prot |