LOC110258710 (C-type lectin domain family 4 member D-like) - Rat Genome Database

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Gene: LOC110258710 (C-type lectin domain family 4 member D-like) Sus scrofa
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Symbol: LOC110258710
Name: C-type lectin domain family 4 member D-like
RGD ID: 14164867
Description: ENCODES a protein that exhibits immunoglobulin receptor binding (ortholog); mannose binding (ortholog); pattern recognition receptor activity (ortholog); INVOLVED IN adaptive immune response (ortholog); antifungal innate immune response (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
LOC110258710
(Sus scrofa - pig)
No map positions available.
CLEC4D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,513,503 - 8,531,696 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,509,475 - 8,522,366 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,666,099 - 8,674,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,557,403 - 8,566,229 (+)NCBINCBI36Build 36hg18NCBI36
Build 34128,557,402 - 8,566,225NCBI
Celera1210,202,132 - 10,210,958 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,448,485 - 8,457,311 (+)NCBIHuRef
CHM1_1128,635,100 - 8,643,926 (+)NCBICHM1_1
T2T-CHM13v2.0128,496,932 - 8,515,063 (+)NCBIT2T-CHM13v2.0
Clec4d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,239,066 - 123,252,227 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6123,239,070 - 123,252,224 (+)EnsemblGRCm39 Ensembl
GRCm386123,262,107 - 123,275,268 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,262,111 - 123,275,265 (+)EnsemblGRCm38mm10GRCm38
MGSCv376123,212,125 - 123,225,286 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366123,227,736 - 123,240,884 (+)NCBIMGSCv36mm8
Celera6125,059,667 - 125,072,919 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.33NCBI
Clec4d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,275,287 - 158,286,978 (+)NCBIGRCr8
mRatBN7.24156,589,591 - 156,599,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,589,792 - 156,598,848 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,841,890 - 162,851,041 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,624,772 - 158,633,925 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,270,184 - 157,279,333 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,253,084 - 156,264,766 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,253,079 - 156,264,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04223,269,999 - 223,281,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,883,556 - 159,892,609 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14160,128,491 - 160,137,545 (+)NCBI
Celera4145,381,212 - 145,388,954 (+)NCBICelera
Cytogenetic Map4q42NCBI
Clec4d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554135,267,161 - 5,277,090 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554135,267,548 - 5,276,969 (-)NCBIChiLan1.0ChiLan1.0
CLEC4D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21014,041,441 - 14,050,413 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11214,038,201 - 14,046,060 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,599,654 - 8,608,494 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,814,680 - 8,823,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,814,680 - 8,823,484 (+)Ensemblpanpan1.1panPan2
LOC611536
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,520,289 - 37,559,920 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,551,064 - 37,558,847 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,056,404 - 9,095,670 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,874,289 - 37,913,533 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2737,860,374 - 37,915,627 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12737,748,924 - 37,788,104 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,790,476 - 37,829,811 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,543,144 - 8,582,370 (-)NCBIUU_Cfam_GSD_1.0
Clec4d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,887,289 - 99,896,017 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936858303,639 - 312,083 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936858303,639 - 312,092 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC4D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,294,999 - 8,303,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666089393,835 - 402,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

respiratory system
High
Medium 1
Low 1
Below cutoff

Sequence


Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037528 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005024919 UniProtKB/TrEMBL
  ENSSSCG00015010542 UniProtKB/TrEMBL
  ENSSSCG00025016423 UniProtKB/TrEMBL
  ENSSSCG00030033102 UniProtKB/TrEMBL
  ENSSSCG00050047606 UniProtKB/TrEMBL
  ENSSSCG00060049727 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063914 ENTREZGENE
  ENSSSCT00000063914.3 UniProtKB/TrEMBL
  ENSSSCT00005039531.1 UniProtKB/TrEMBL
  ENSSSCT00015013849.1 UniProtKB/TrEMBL
  ENSSSCT00015013917.1 UniProtKB/TrEMBL
  ENSSSCT00025022083.1 UniProtKB/TrEMBL
  ENSSSCT00030045813.1 UniProtKB/TrEMBL
  ENSSSCT00050064859.1 UniProtKB/TrEMBL
  ENSSSCT00060067532.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene LOC110258710 ENTREZGENE
PANTHER KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  LITHOSTATHINE UniProtKB/TrEMBL
  SI:DKEYP-75B4.10 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A287B7X7_PIG UniProtKB/TrEMBL
  A0A8D0JGU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R0L5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TVI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WGJ6 ENTREZGENE, UniProtKB/TrEMBL