Actb (actin, beta) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Actb (actin, beta) Mus musculus
Analyze
Symbol: Actb
Name: actin, beta
RGD ID: 735802
MGI Page MGI
Description: Predicted to have several functions, including Tat protein binding activity; enzyme binding activity; and kinesin binding activity. Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Involved in negative regulation of protein binding activity and synaptic vesicle endocytosis. Localizes to several cellular components, including Schaffer collateral - CA1 synapse; calyx of Held; and cortical cytoskeleton. Is expressed in several structures, including decidua; early conceptus; gonad; musculature; and tooth. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome. Orthologous to human ACTB (actin beta).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: A-X actin-like protein; Act; actin, beta, cytoplasmic; actin, cytoplasmic 1; Actx; beta-a; beta-actin; E430023M04Rik; melanoma X-actin
RGD Orthologs
Human
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Actb-ps1   Actg-ps1   Gm14348   Gm14356   Gm14357   Gm14361   Gm14375   Gm14610   Gm14747   Gm15252   Gm15256   Gm15257   Gm15260   Gm15273   Gm15725   Gm16423   Gm17087   Gm17854   Gm17855   Gm17856   Gm17857   Gm17858   Gm17859   Gm17860   Gm17862   Gm17863   Gm17864   Gm17865   Gm17866   Gm17875   Gm17878   Gm17883   Gm4750   Gm4760   Gm4918   Gm5241   Gm6375   Gm7023   Gm9348  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,888,870 - 142,892,509 (-)NCBIGRCm39mm39
GRCm39 Ensembl5142,888,870 - 142,892,509 (-)Ensembl
GRCm385142,903,115 - 142,907,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,903,115 - 142,906,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,664,795 - 143,668,403 (-)NCBIGRCm37mm9NCBIm37
MGSCv365143,168,256 - 143,171,864 (-)NCBImm8
Celera5139,951,533 - 139,955,141 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-epicatechin-3-O-gallate  (ISO)
(+)-pilocarpine  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(3,4-dihydroxyphenyl)acetic acid  (ISO)
(S)-amphetamine  (EXP)
(S)-nicotine  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
2-amino-2-deoxy-D-galactopyranose  (ISO)
2-methylcholine  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-phenylprop-2-enal  (ISO)
4-hydroperoxycyclophosphamide  (EXP)
4-hydroxynon-2-enal  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-fluorouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
abamectin  (EXP)
acetamide  (ISO)
acetic acid  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP)
all-trans-retinol  (ISO)
alloxan  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
bathocuproine disulfonic acid  (ISO)
beauvericin  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
bromobenzene  (ISO)
bromochloroacetic acid  (EXP)
bufalin  (ISO)
buspirone  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcidiol  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon disulfide  (ISO)
carbon nanotube  (EXP,ISO)
ceftriaxone  (ISO)
chloromethylisothiazolinone  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (ISO)
DDT  (ISO)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dopamine  (ISO)
Doramectin  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
fenbuconazole  (ISO)
fipronil  (ISO)
flutamide  (ISO)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (ISO)
glyphosate  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
indirubin-3'-monoxime  (ISO)
iodide salt  (ISO)
ionomycin  (ISO)
isoprenaline  (EXP)
latrunculin A  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lead(II) chloride  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
lovastatin  (EXP)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (EXP,ISO)
mifepristone  (ISO)
Monobutylphthalate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosomorpholine  (ISO)
naphthalene  (EXP)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (EXP)
nitric oxide  (EXP)
nitroglycerin  (ISO)
Nonylphenol  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (EXP,ISO)
paraoxon  (ISO)
paraquat  (ISO)
perfluorobutyric acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
PhIP  (ISO)
phlorizin  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
progesterone  (EXP)
propiconazole  (EXP)
pyrrolidine dithiocarbamate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP)
selenium atom  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
simvastatin  (ISO)
sirolimus  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP,ISO)
titanium dioxide  (EXP)
triadimefon  (EXP)
tributylstannane  (ISO)
trichloroethene  (EXP)
triphenylstannane  (ISO)
Triptolide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
warfarin  (EXP)
zinc atom  (EXP)
zinc dichloride  (EXP)
zinc sulfate  (ISO)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal astrocyte physiology  (IAGP)
abnormal cochlear hair cell stereociliary bundle morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal outer hair cell stereociliary bundle morphology  (IAGP)
abnormal regulatory T cell number  (IAGP)
abnormal smooth muscle morphology  (IAGP)
abnormal type IV hypersensitivity reaction  (IAGP)
abnormal uterus morphology  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased circulating adiponectin level  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating free fatty acids level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating LDL cholesterol level  (IAGP)
decreased circulating leptin level  (IAGP)
decreased epididymal fat pad weight  (IAGP)
decreased fasting circulating glucose level  (IAGP)
decreased follicular B cell number  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased outer hair cell stereocilia number  (IAGP)
decreased single-positive T cell number  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
delayed fertility  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality at implantation, complete penetrance  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged gallbladder  (IAGP)
enlarged seminal vesicle  (IAGP)
impaired hearing  (IAGP)
improved glucose tolerance  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating ketone body level  (IAGP)
increased food intake  (IAGP)
increased hemangioma incidence  (IAGP)
increased leiomyosarcoma incidence  (IAGP)
increased mammary adenocarcinoma incidence  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased oxygen consumption  (IAGP)
increased sarcoma incidence  (IAGP)
increased susceptibility to age-related hearing loss  (IAGP)
increased thymocyte number  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
short cochlear hair cell stereocilia  (IAGP)
short outer hair cell stereocilia  (IAGP)
spleen hypoplasia  (IAGP)
References

Additional References at PubMed
PMID:213279   PMID:1555776   PMID:1577857   PMID:1592003   PMID:1611214   PMID:1618323   PMID:1618860   PMID:1728592   PMID:1968414   PMID:2201580   PMID:3084797   PMID:3182774  
PMID:3221869   PMID:3422100   PMID:3677181   PMID:3754329   PMID:6306256   PMID:6641707   PMID:6893015   PMID:6953429   PMID:7478547   PMID:7490564   PMID:7493406   PMID:7510589  
PMID:7528108   PMID:7544156   PMID:7544313   PMID:7550314   PMID:7588063   PMID:7597044   PMID:7618085   PMID:7619733   PMID:7622488   PMID:7624144   PMID:7628699   PMID:7632727  
PMID:7635051   PMID:7646816   PMID:7647795   PMID:7655084   PMID:7671815   PMID:7689222   PMID:7690561   PMID:7715727   PMID:7720575   PMID:7721778   PMID:7724599   PMID:7739809  
PMID:7744068   PMID:7753194   PMID:7753811   PMID:7754814   PMID:7803821   PMID:7813789   PMID:7857657   PMID:7881126   PMID:7896882   PMID:8043949   PMID:8075499   PMID:8131747  
PMID:8150204   PMID:8183555   PMID:8247133   PMID:8313988   PMID:8482333   PMID:8486351   PMID:8522070   PMID:8537330   PMID:8541208   PMID:8555112   PMID:8563023   PMID:8567692  
PMID:8573724   PMID:8589531   PMID:8592515   PMID:8601032   PMID:8626388   PMID:8661069   PMID:8824813   PMID:8833906   PMID:8853988   PMID:8889548   PMID:9070865   PMID:9119389  
PMID:9463375   PMID:9600108   PMID:9608737   PMID:9635195   PMID:9707328   PMID:9798653   PMID:9811942   PMID:10349636   PMID:10683146   PMID:10922068   PMID:11034907   PMID:11042159  
PMID:11076861   PMID:11172053   PMID:11217851   PMID:11318609   PMID:11557891   PMID:11785969   PMID:11839254   PMID:11931770   PMID:12068957   PMID:12191433   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:12522145   PMID:12766169   PMID:12819125   PMID:12904583   PMID:12910269   PMID:14512296   PMID:14610273   PMID:14695345   PMID:15033168   PMID:15110774   PMID:15251432  
PMID:15254588   PMID:15271982   PMID:15558034   PMID:15589691   PMID:15619624   PMID:15782199   PMID:15802640   PMID:15806558   PMID:15895466   PMID:15897890   PMID:15908953   PMID:15944124  
PMID:15963768   PMID:16028230   PMID:16041369   PMID:16141072   PMID:16141073   PMID:16196101   PMID:16325481   PMID:16407977   PMID:16478721   PMID:16602821   PMID:16794040   PMID:16800626  
PMID:16872451   PMID:16984773   PMID:17018872   PMID:17082189   PMID:17309103   PMID:17335348   PMID:17360635   PMID:17374359   PMID:17531226   PMID:17623278   PMID:17634195   PMID:17634366  
PMID:17729296   PMID:17877786   PMID:17987666   PMID:18211959   PMID:18307411   PMID:18308728   PMID:18353970   PMID:18373617   PMID:18495661   PMID:18498732   PMID:18498735   PMID:18614564  
PMID:18654668   PMID:18723693   PMID:18776938   PMID:18787698   PMID:18799693   PMID:18804439   PMID:18835850   PMID:19095765   PMID:19118186   PMID:19136429   PMID:19138174   PMID:19423573  
PMID:19799774   PMID:19933998   PMID:20086016   PMID:20167579   PMID:20171124   PMID:20487000   PMID:20826796   PMID:20847274   PMID:20975687   PMID:20976199   PMID:21172822   PMID:21177343  
PMID:21239487   PMID:21240280   PMID:21267068   PMID:21325027   PMID:21401944   PMID:21445349   PMID:21502360   PMID:21565611   PMID:21731673   PMID:21778137   PMID:21873635   PMID:21880782  
PMID:21900491   PMID:21909369   PMID:21925491   PMID:22016186   PMID:22072714   PMID:22219273   PMID:22246323   PMID:22253858   PMID:22260730   PMID:22305657   PMID:22323606   PMID:22327294  
PMID:22349694   PMID:22403730   PMID:22448045   PMID:22496869   PMID:22673621   PMID:22735032   PMID:22810847   PMID:22854021   PMID:22884776   PMID:22948660   PMID:23022035   PMID:23185019  
PMID:23213437   PMID:23300775   PMID:23544080   PMID:23676498   PMID:23791176   PMID:23821198   PMID:23840778   PMID:23951027   PMID:23960241   PMID:24039251   PMID:24123846   PMID:24129186  
PMID:24302573   PMID:24327345   PMID:24409333   PMID:24457600   PMID:24458642   PMID:24462096   PMID:24623780   PMID:24658003   PMID:24766723   PMID:24828644   PMID:24834486   PMID:24840128  
PMID:24855944   PMID:24878350   PMID:24879156   PMID:24917498   PMID:24952961   PMID:24981861   PMID:25053429   PMID:25155504   PMID:25422376   PMID:25588836   PMID:25737280   PMID:25765874  
PMID:25793741   PMID:26076820   PMID:26132331   PMID:26496610   PMID:26581985   PMID:26687222   PMID:26969129   PMID:27046834   PMID:27127100   PMID:27217161   PMID:27345368   PMID:27480124  
PMID:27559308   PMID:27576662   PMID:27747430   PMID:27840001   PMID:27894274   PMID:27998725   PMID:28209510   PMID:28223507   PMID:28335007   PMID:28378742   PMID:28478229   PMID:28634551  
PMID:28641108   PMID:28671696   PMID:28692740   PMID:28701737   PMID:28760667   PMID:28811219   PMID:28939413   PMID:28966085   PMID:28994389   PMID:29018325   PMID:29042633   PMID:29166599  
PMID:29244021   PMID:29265728   PMID:29311218   PMID:29408805   PMID:29459677   PMID:29507408   PMID:29533739   PMID:29851084   PMID:29858574   PMID:29956586   PMID:30012594   PMID:30094508  
PMID:30134179   PMID:30136304   PMID:30335684   PMID:30409884   PMID:30550785   PMID:30562487   PMID:30562941   PMID:30595499   PMID:30713523   PMID:30862665   PMID:30962377   PMID:30988523  
PMID:31076486   PMID:31167115   PMID:31189591   PMID:31299228   PMID:31301300   PMID:31384006   PMID:31604241   PMID:32248761   PMID:32325033   PMID:32610130   PMID:32866472  


Genomics

Comparative Map Data
Actb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,888,870 - 142,892,509 (-)NCBIGRCm39mm39
GRCm39 Ensembl5142,888,870 - 142,892,509 (-)Ensembl
GRCm385142,903,115 - 142,907,976 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,903,115 - 142,906,754 (-)EnsemblGRCm38mm10GRCm38
MGSCv375143,664,795 - 143,668,403 (-)NCBIGRCm37mm9NCBIm37
MGSCv365143,168,256 - 143,171,864 (-)NCBImm8
Celera5139,951,533 - 139,955,141 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.8NCBI
ACTB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl75,526,409 - 5,563,902 (-)EnsemblGRCh38hg38GRCh38
GRCh3875,527,148 - 5,530,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3775,566,779 - 5,570,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,533,312 - 5,536,747 (-)NCBINCBI36hg18NCBI36
Build 3475,340,026 - 5,343,462NCBI
Celera75,526,560 - 5,530,009 (-)NCBI
Cytogenetic Map7p22.1NCBI
HuRef75,479,343 - 5,482,774 (-)NCBIHuRef
CHM1_175,566,362 - 5,569,815 (-)NCBICHM1_1
CRA_TCAGchr7v275,613,124 - 5,616,577 (-)NCBI
Actb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,663,112 - 11,666,697 (+)NCBI
Rnor_6.0 Ensembl1213,715,843 - 13,718,841 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01213,715,843 - 13,718,813 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01215,745,856 - 15,749,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,047,070 - 12,050,040 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11212,076,997 - 12,079,967 (+)NCBI
Celera1213,452,443 - 13,455,413 (+)NCBICelera
Cytogenetic Map12p11NCBI
Actb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,356,699 - 10,361,585 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,358,100 - 10,361,585 (-)NCBIChiLan1.0ChiLan1.0
ACTB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1612,421,006 - 12,424,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl612,418,932 - 12,462,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,893,047 - 13,896,436 (+)NCBI
ROS_Cfam_1.0612,557,673 - 12,561,075 (+)NCBI
UMICH_Zoey_3.1612,367,765 - 12,371,152 (+)NCBI
UNSW_CanFamBas_1.0612,301,595 - 12,304,986 (+)NCBI
UU_Cfam_GSD_1.0612,578,988 - 12,582,384 (+)NCBI
Actb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,675,973 - 140,679,567 (+)NCBI
SpeTri2.0NW_004936765667,107 - 670,627 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,082,216 - 4,090,356 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,084,275 - 4,090,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,729,278 - 4,732,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,195,676 - 16,197,161 (+)NCBI
Vero_WHO_p1.0NW_0236660905,777,528 - 5,781,244 (-)NCBI
Actb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474028,087,051 - 28,090,359 (+)NCBI

Position Markers
Actb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,117 - 142,903,236UniSTSGRCm38
MGSCv375143,664,796 - 143,664,915UniSTSGRCm37
Celera5139,951,534 - 139,951,653UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC102052P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,273 - 37,883,627UniSTSGRCm38
GRCm385142,903,806 - 142,904,385UniSTSGRCm38
MGSCv371637,883,359 - 37,883,713UniSTSGRCm37
MGSCv375143,665,485 - 143,666,064UniSTSGRCm37
Celera5139,952,223 - 139,952,802UniSTS
Celera1638,289,941 - 38,290,295UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC102156P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,537 - 142,904,756UniSTSGRCm38
MGSCv375143,666,216 - 143,666,435UniSTSGRCm37
Celera5139,952,954 - 139,953,173UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC107891P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,507 - 142,905,474UniSTSGRCm38
GRCm381637,882,659 - 37,883,151UniSTSGRCm38
MGSCv371637,882,745 - 37,883,237UniSTSGRCm37
MGSCv375143,666,186 - 143,667,153UniSTSGRCm37
Celera5139,952,924 - 139,953,891UniSTS
Celera1638,289,327 - 38,289,819UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC108483P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,772 - 142,904,245UniSTSGRCm38
MGSCv375143,665,451 - 143,665,924UniSTSGRCm37
Celera5139,952,189 - 139,952,662UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC109653P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,780 - 37,883,196UniSTSGRCm38
GRCm385142,904,462 - 142,905,353UniSTSGRCm38
MGSCv371637,882,866 - 37,883,282UniSTSGRCm37
MGSCv375143,666,141 - 143,667,032UniSTSGRCm37
Celera5139,952,879 - 139,953,770UniSTS
Celera1638,289,448 - 38,289,864UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC114224P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC115141P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC117216P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,448 - 37,883,540UniSTSGRCm38
GRCm385142,903,894 - 142,904,111UniSTSGRCm38
MGSCv371637,883,534 - 37,883,626UniSTSGRCm37
MGSCv375143,665,573 - 143,665,790UniSTSGRCm37
Celera5139,952,311 - 139,952,528UniSTS
Celera1638,290,116 - 38,290,208UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC117781P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,565,833 - 8,566,152UniSTSGRCm38
GRCm385142,903,779 - 142,904,245UniSTSGRCm38
MGSCv375143,665,458 - 143,665,924UniSTSGRCm37
MGSCv37178,758,698 - 8,759,017UniSTSGRCm37
Celera178,611,955 - 8,612,274UniSTS
Celera5139,952,196 - 139,952,662UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC122089P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,118 - 142,903,236UniSTSGRCm38
MGSCv375143,664,797 - 143,664,915UniSTSGRCm37
Celera5139,951,535 - 139,951,653UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC122623P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,500 - 37,883,620UniSTSGRCm38
GRCm385142,903,813 - 142,903,934UniSTSGRCm38
MGSCv371637,883,586 - 37,883,706UniSTSGRCm37
MGSCv375143,665,492 - 143,665,613UniSTSGRCm37
Celera5139,952,230 - 139,952,351UniSTS
Celera1638,290,168 - 38,290,288UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC122924P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,704 - 142,905,683UniSTSGRCm38
MGSCv375143,666,383 - 143,667,362UniSTSGRCm37
Celera5139,953,121 - 139,954,100UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC125253P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,530 - 142,905,375UniSTSGRCm38
MGSCv375143,666,209 - 143,667,054UniSTSGRCm37
Celera5139,952,947 - 139,953,792UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC125345P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,772 - 142,904,245UniSTSGRCm38
GRCm38X152,433,566 - 152,433,930UniSTSGRCm38
MGSCv37X148,868,109 - 148,868,473UniSTSGRCm37
MGSCv375143,665,451 - 143,665,924UniSTSGRCm37
Celera5139,952,189 - 139,952,662UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC129447P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC129743P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,246 - 142,905,375UniSTSGRCm38
MGSCv375143,666,925 - 143,667,054UniSTSGRCm37
Celera5139,953,663 - 139,953,792UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC129788P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,500 - 142,905,381UniSTSGRCm38
MGSCv375143,666,179 - 143,667,060UniSTSGRCm37
Celera5139,952,917 - 139,953,798UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC133768P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,036 - 37,883,194UniSTSGRCm38
GRCm385142,904,464 - 142,904,622UniSTSGRCm38
MGSCv371637,883,122 - 37,883,280UniSTSGRCm37
MGSCv375143,666,143 - 143,666,301UniSTSGRCm37
Celera5139,952,881 - 139,953,039UniSTS
Celera1638,289,704 - 38,289,862UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC133829P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC135783P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,465 - 142,904,696UniSTSGRCm38
GRCm381637,882,960 - 37,883,193UniSTSGRCm38
MGSCv371637,883,046 - 37,883,279UniSTSGRCm37
MGSCv375143,666,144 - 143,666,375UniSTSGRCm37
Celera5139,952,882 - 139,953,113UniSTS
Celera1638,289,628 - 38,289,861UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC137757P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,461 - 142,905,374UniSTSGRCm38
MGSCv375143,666,140 - 143,667,053UniSTSGRCm37
Celera5139,952,878 - 139,953,791UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC137792P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC138011P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,816 - 142,904,467UniSTSGRCm38
GRCm38X152,433,439 - 152,433,886UniSTSGRCm38
MGSCv37X148,867,982 - 148,868,429UniSTSGRCm37
MGSCv375143,665,495 - 143,666,146UniSTSGRCm37
Celera5139,952,233 - 139,952,884UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC138261P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC139793P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,772 - 142,904,193UniSTSGRCm38
MGSCv375143,665,451 - 143,665,872UniSTSGRCm37
Celera5139,952,189 - 139,952,610UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC145386P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC149351P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC150974P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,786 - 142,904,625UniSTSGRCm38
MGSCv375143,665,465 - 143,666,304UniSTSGRCm37
Celera5139,952,203 - 139,953,042UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC151001P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC151817P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,581 - 142,903,946UniSTSGRCm38
MGSCv375143,665,260 - 143,665,625UniSTSGRCm37
Celera5139,951,998 - 139,952,363UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC152551P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
LOC345651  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X152,433,013 - 152,433,142UniSTSGRCm38
MGSCv37X148,867,556 - 148,867,685UniSTSGRCm37
Cytogenetic Map5G2UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map8E2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
mActb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,347 - 142,903,797UniSTSGRCm38
MGSCv375143,665,026 - 143,665,476UniSTSGRCm37
Celera5139,951,764 - 139,952,214UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC180915P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,412 - 142,904,773UniSTSGRCm38
MGSCv375143,666,091 - 143,666,452UniSTSGRCm37
Celera5139,952,829 - 139,953,190UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC18465P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,256 - 142,905,585UniSTSGRCm38
MGSCv375143,666,935 - 143,667,264UniSTSGRCm37
Celera5139,953,673 - 139,954,002UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC187403P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC19354P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,776 - 142,904,242UniSTSGRCm38
MGSCv375143,665,455 - 143,665,921UniSTSGRCm37
Celera5139,952,193 - 139,952,659UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC196458P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,344 - 142,905,677UniSTSGRCm38
MGSCv375143,667,023 - 143,667,356UniSTSGRCm37
Celera5139,953,761 - 139,954,094UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC200947P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,714 - 142,905,389UniSTSGRCm38
MGSCv375143,666,393 - 143,667,068UniSTSGRCm37
Celera5139,953,131 - 139,953,806UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC207566P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,450 - 142,905,686UniSTSGRCm38
MGSCv375143,667,129 - 143,667,365UniSTSGRCm37
Celera5139,953,867 - 139,954,103UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC21071P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,797 - 142,904,206UniSTSGRCm38
MGSCv375143,665,476 - 143,665,885UniSTSGRCm37
Celera5139,952,214 - 139,952,623UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC212730P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8E2UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map193.3UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC21385P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,001 - 37,883,597UniSTSGRCm38
GRCm385142,903,836 - 142,904,655UniSTSGRCm38
MGSCv371637,883,087 - 37,883,683UniSTSGRCm37
MGSCv375143,665,515 - 143,666,334UniSTSGRCm37
Celera5139,952,253 - 139,953,072UniSTS
Celera1638,289,669 - 38,290,265UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC224995P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,190 - 142,904,779UniSTSGRCm38
MGSCv375143,665,869 - 143,666,458UniSTSGRCm37
Celera5139,952,607 - 139,953,196UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC22515P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,770 - 37,883,274UniSTSGRCm38
GRCm385142,904,384 - 142,905,363UniSTSGRCm38
MGSCv375143,666,063 - 143,667,042UniSTSGRCm37
MGSCv371637,882,856 - 37,883,360UniSTSGRCm37
Celera5139,952,801 - 139,953,780UniSTS
Celera1638,289,438 - 38,289,942UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map5G2UniSTS
cM Map634.95UniSTS
cM Map580.0UniSTS
PMC240671P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,808 - 142,904,190UniSTSGRCm38
MGSCv375143,665,487 - 143,665,869UniSTSGRCm37
Celera5139,952,225 - 139,952,607UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC23951P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,929 - 37,883,401UniSTSGRCm38
GRCm385142,904,158 - 142,904,727UniSTSGRCm38
MGSCv371637,883,015 - 37,883,487UniSTSGRCm37
MGSCv375143,665,837 - 143,666,406UniSTSGRCm37
Celera5139,952,575 - 139,953,144UniSTS
Celera1638,289,597 - 38,290,069UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC24561P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC24644P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,566,598 - 8,566,840UniSTSGRCm38
GRCm385142,905,256 - 142,905,585UniSTSGRCm38
MGSCv375143,666,935 - 143,667,264UniSTSGRCm37
MGSCv37178,759,463 - 8,759,705UniSTSGRCm37
Celera178,612,720 - 8,612,962UniSTS
Celera5139,953,673 - 139,954,002UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC24942P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,651 - 37,882,725UniSTSGRCm38
MGSCv371637,882,737 - 37,882,811UniSTSGRCm37
Celera1638,289,319 - 38,289,393UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC262340P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,276 - 37,883,644UniSTSGRCm38
GRCm385142,903,789 - 142,904,382UniSTSGRCm38
MGSCv371637,883,362 - 37,883,730UniSTSGRCm37
MGSCv375143,665,468 - 143,666,061UniSTSGRCm37
Celera5139,952,206 - 139,952,799UniSTS
Celera1638,289,944 - 38,290,312UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC275467P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,511 - 142,904,764UniSTSGRCm38
MGSCv375143,666,190 - 143,666,443UniSTSGRCm37
Celera5139,952,928 - 139,953,181UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC30411P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,249 - 142,905,656UniSTSGRCm38
MGSCv375143,666,928 - 143,667,335UniSTSGRCm37
Celera5139,953,666 - 139,954,073UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC305683P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC33181P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,323 - 37,883,632UniSTSGRCm38
GRCm385142,903,801 - 142,904,240UniSTSGRCm38
MGSCv371637,883,409 - 37,883,718UniSTSGRCm37
MGSCv375143,665,480 - 143,665,919UniSTSGRCm37
Celera5139,952,218 - 139,952,657UniSTS
Celera1638,289,991 - 38,290,300UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC33279P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC340938P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,181 - 142,904,434UniSTSGRCm38
GRCm38X146,096,045 - 146,096,204UniSTSGRCm38
MGSCv375143,665,860 - 143,666,113UniSTSGRCm37
MGSCv37X142,530,588 - 142,530,747UniSTSGRCm37
CeleraX130,045,168 - 130,045,327UniSTS
Celera5139,952,598 - 139,952,851UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic MapXF2UniSTS
cM Map580.0UniSTS
PMC340938P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,181 - 142,904,402UniSTSGRCm38
MGSCv375143,665,860 - 143,666,081UniSTSGRCm37
Celera5139,952,598 - 139,952,819UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC350549P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,736 - 142,905,343UniSTSGRCm38
MGSCv375143,666,415 - 143,667,022UniSTSGRCm37
Celera5139,953,153 - 139,953,760UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC356969P12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC37512P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,507 - 142,904,756UniSTSGRCm38
MGSCv375143,666,186 - 143,666,435UniSTSGRCm37
Celera5139,952,924 - 139,953,173UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC84911P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC85361P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC85795P4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,672 - 37,883,150UniSTSGRCm38
GRCm385142,904,508 - 142,905,461UniSTSGRCm38
MGSCv371637,882,758 - 37,883,236UniSTSGRCm37
MGSCv375143,666,187 - 143,667,140UniSTSGRCm37
Celera5139,952,925 - 139,953,878UniSTS
Celera1638,289,340 - 38,289,818UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC87052P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,210 - 37,883,637UniSTSGRCm38
GRCm385142,903,796 - 142,904,448UniSTSGRCm38
MGSCv371637,883,296 - 37,883,723UniSTSGRCm37
MGSCv375143,665,475 - 143,666,127UniSTSGRCm37
Celera1638,289,878 - 38,290,305UniSTS
Celera5139,952,213 - 139,952,865UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC96811P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,916 - 37,883,474UniSTSGRCm38
GRCm385142,904,085 - 142,904,740UniSTSGRCm38
MGSCv371637,883,002 - 37,883,560UniSTSGRCm37
MGSCv375143,665,764 - 143,666,419UniSTSGRCm37
Celera5139,952,502 - 139,953,157UniSTS
Celera1638,289,584 - 38,290,142UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC97307P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,631 - 142,905,450UniSTSGRCm38
MGSCv375143,666,310 - 143,667,129UniSTSGRCm37
Celera5139,953,048 - 139,953,867UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC97445P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,703 - 142,905,683UniSTSGRCm38
MGSCv375143,666,382 - 143,667,362UniSTSGRCm37
Celera5139,953,120 - 139,954,100UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC97559P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC97568P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC98352P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,830 - 142,904,630UniSTSGRCm38
MGSCv375143,665,509 - 143,666,309UniSTSGRCm37
Celera5139,952,247 - 139,953,047UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC99880P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
RI01350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,869 - 37,883,053UniSTSGRCm38
MGSCv371637,882,955 - 37,883,139UniSTSGRCm37
Celera1638,289,537 - 38,289,721UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC109669P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,883,030 - 37,883,630UniSTSGRCm38
GRCm385142,903,803 - 142,904,628UniSTSGRCm38
MGSCv371637,883,116 - 37,883,716UniSTSGRCm37
MGSCv375143,665,482 - 143,666,307UniSTSGRCm37
Celera5139,952,220 - 139,953,045UniSTS
Celera1638,289,698 - 38,290,298UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC117352P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,654 - 37,882,813UniSTSGRCm38
GRCm385142,905,320 - 142,905,479UniSTSGRCm38
MGSCv375143,666,999 - 143,667,158UniSTSGRCm37
MGSCv371637,882,740 - 37,882,899UniSTSGRCm37
Celera5139,953,737 - 139,953,896UniSTS
Celera1638,289,322 - 38,289,481UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map5G2UniSTS
cM Map634.95UniSTS
cM Map580.0UniSTS
PMC125678P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC154439P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,935 - 37,883,374UniSTSGRCm38
GRCm385142,904,189 - 142,904,721UniSTSGRCm38
MGSCv371637,883,021 - 37,883,460UniSTSGRCm37
MGSCv375143,665,868 - 143,666,400UniSTSGRCm37
Celera5139,952,606 - 139,953,138UniSTS
Celera1638,289,603 - 38,290,042UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC156124P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11E2UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC193670P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
cM Map634.95UniSTS
PMC209527P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,503 - 142,905,456UniSTSGRCm38
MGSCv375143,666,182 - 143,667,135UniSTSGRCm37
Celera5139,952,920 - 139,953,873UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map8E2UniSTS
cM Map580.0UniSTS
cM Map867.0UniSTS
PMC24644P5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,256 - 142,905,452UniSTSGRCm38
MGSCv375143,666,935 - 143,667,131UniSTSGRCm37
Celera5139,953,673 - 139,953,869UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC26753P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,903,916 - 142,904,578UniSTSGRCm38
MGSCv375143,665,595 - 143,666,257UniSTSGRCm37
Celera5139,952,333 - 139,952,995UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC317352P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,323 - 142,905,662UniSTSGRCm38
MGSCv375143,667,002 - 143,667,341UniSTSGRCm37
Celera5139,953,740 - 139,954,079UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC86032P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,732 - 37,883,154UniSTSGRCm38
GRCm385142,904,504 - 142,905,401UniSTSGRCm38
MGSCv371637,882,818 - 37,883,240UniSTSGRCm37
MGSCv375143,666,183 - 143,667,080UniSTSGRCm37
Celera5139,952,921 - 139,953,818UniSTS
Celera1638,289,400 - 38,289,822UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map580.0UniSTS
PMC86650P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,607 - 142,905,448UniSTSGRCm38
MGSCv375143,666,286 - 143,667,127UniSTSGRCm37
Celera5139,953,024 - 139,953,865UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
PMC86716P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,905,356 - 142,905,458UniSTSGRCm38
MGSCv375143,667,035 - 143,667,137UniSTSGRCm37
Celera5139,953,773 - 139,953,875UniSTS
Cytogenetic Map5G2UniSTS
cM Map580.0UniSTS
Actb-rs1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G2UniSTS
Cytogenetic Map16B3UniSTS
cM Map1627.3UniSTS
cM MapX63.0UniSTS
Acat1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS
cM Map929.12UniSTS
Actb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385142,904,106 - 142,904,719UniSTSGRCm38
MGSCv375143,665,785 - 143,666,398UniSTSGRCm37
Celera5139,952,523 - 139,953,136UniSTS
Cytogenetic Map5G2UniSTS
Actb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381637,882,740 - 37,882,951UniSTSGRCm38
GRCm385142,904,705 - 142,905,393UniSTSGRCm38
MGSCv371637,882,826 - 37,883,037UniSTSGRCm37
MGSCv375143,666,384 - 143,667,072UniSTSGRCm37
Celera1638,289,408 - 38,289,619UniSTS
Celera5139,953,122 - 139,953,810UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map5G2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124714580151834684Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125147702151834684Mouse
4141218Ath24_matherosclerosis 24 (mouse)Not determined129583274151834684Mouse
12880406Jcdq2_mjoint cartilage degeneration QTL 2 (mouse)5129851021151834684Mouse
11049557Lmr26_mleishmaniasis resistance 26 (mouse)5134002093151834684Mouse
13504734Ifvrq4_minfluenza virus resistance QTL 4 (mouse)5140000000153000000Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir34ammu-miR-34a-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI18835850

Predicted Target Of
Summary Value
Count of predictions:1073
Count of miRNA genes:451
Interacting mature miRNAs:510
Transcripts:ENSMUST00000100497, ENSMUST00000106216, ENSMUST00000163829, ENSMUST00000164765, ENSMUST00000165629, ENSMUST00000167386, ENSMUST00000167721, ENSMUST00000171419
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB028847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC144818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY618569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE992124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY094883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY155324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY783897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX211008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF095208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M12481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U89400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X03765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000100497   ⟹   ENSMUSP00000098066
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,903,115 - 142,906,754 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106216   ⟹   ENSMUSP00000101823
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,705 - 142,905,937 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163829   ⟹   ENSMUSP00000132135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,672 - 142,906,722 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164765
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,873 - 142,906,694 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165629
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,766 - 142,906,672 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167386
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,395 - 142,906,725 (-)Ensembl
RefSeq Acc Id: ENSMUST00000167721   ⟹   ENSMUSP00000127663
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,903,501 - 142,906,702 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171419   ⟹   ENSMUSP00000130611
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,904,351 - 142,905,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000196997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5142,903,234 - 142,903,654 (-)Ensembl
RefSeq Acc Id: NM_007393   ⟹   NP_031419
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395142,888,870 - 142,892,509 (-)NCBI
GRCm385142,903,115 - 142,906,754 (-)NCBI
MGSCv375143,664,795 - 143,668,403 (-)RGD
Celera5139,951,533 - 139,955,141 (-)RGD
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_031419 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37144 (Get FASTA)   NCBI Sequence Viewer  
  AAA37170 (Get FASTA)   NCBI Sequence Viewer  
  AAC36507 (Get FASTA)   NCBI Sequence Viewer  
  AAI38612 (Get FASTA)   NCBI Sequence Viewer  
  AAI38615 (Get FASTA)   NCBI Sequence Viewer  
  AAT40730 (Get FASTA)   NCBI Sequence Viewer  
  ABL01512 (Get FASTA)   NCBI Sequence Viewer  
  BAB40317 (Get FASTA)   NCBI Sequence Viewer  
  BAC40507 (Get FASTA)   NCBI Sequence Viewer  
  BAE26283 (Get FASTA)   NCBI Sequence Viewer  
  BAE26288 (Get FASTA)   NCBI Sequence Viewer  
  BAE26359 (Get FASTA)   NCBI Sequence Viewer  
  BAE28137 (Get FASTA)   NCBI Sequence Viewer  
  BAE29648 (Get FASTA)   NCBI Sequence Viewer  
  BAE29655 (Get FASTA)   NCBI Sequence Viewer  
  BAE29658 (Get FASTA)   NCBI Sequence Viewer  
  BAE29789 (Get FASTA)   NCBI Sequence Viewer  
  BAE29910 (Get FASTA)   NCBI Sequence Viewer  
  BAE29918 (Get FASTA)   NCBI Sequence Viewer  
  BAE29928 (Get FASTA)   NCBI Sequence Viewer  
  BAE30031 (Get FASTA)   NCBI Sequence Viewer  
  BAE30144 (Get FASTA)   NCBI Sequence Viewer  
  BAE30152 (Get FASTA)   NCBI Sequence Viewer  
  BAE30164 (Get FASTA)   NCBI Sequence Viewer  
  BAE30169 (Get FASTA)   NCBI Sequence Viewer  
  BAE30187 (Get FASTA)   NCBI Sequence Viewer  
  BAE30199 (Get FASTA)   NCBI Sequence Viewer  
  BAE30218 (Get FASTA)   NCBI Sequence Viewer  
  BAE30264 (Get FASTA)   NCBI Sequence Viewer  
  BAE30280 (Get FASTA)   NCBI Sequence Viewer  
  BAE30326 (Get FASTA)   NCBI Sequence Viewer  
  BAE30357 (Get FASTA)   NCBI Sequence Viewer  
  BAE30358 (Get FASTA)   NCBI Sequence Viewer  
  BAE30366 (Get FASTA)   NCBI Sequence Viewer  
  BAE30406 (Get FASTA)   NCBI Sequence Viewer  
  BAE30426 (Get FASTA)   NCBI Sequence Viewer  
  BAE30591 (Get FASTA)   NCBI Sequence Viewer  
  BAE30781 (Get FASTA)   NCBI Sequence Viewer  
  BAE30828 (Get FASTA)   NCBI Sequence Viewer  
  BAE30859 (Get FASTA)   NCBI Sequence Viewer  
  BAE30863 (Get FASTA)   NCBI Sequence Viewer  
  BAE30900 (Get FASTA)   NCBI Sequence Viewer  
  BAE30908 (Get FASTA)   NCBI Sequence Viewer  
  BAE30933 (Get FASTA)   NCBI Sequence Viewer  
  BAE31046 (Get FASTA)   NCBI Sequence Viewer  
  BAE31215 (Get FASTA)   NCBI Sequence Viewer  
  BAE31245 (Get FASTA)   NCBI Sequence Viewer  
  BAE31340 (Get FASTA)   NCBI Sequence Viewer  
  BAE31359 (Get FASTA)   NCBI Sequence Viewer  
  BAE31388 (Get FASTA)   NCBI Sequence Viewer  
  BAE31537 (Get FASTA)   NCBI Sequence Viewer  
  BAE32013 (Get FASTA)   NCBI Sequence Viewer  
  BAE35350 (Get FASTA)   NCBI Sequence Viewer  
  BAE35412 (Get FASTA)   NCBI Sequence Viewer  
  BAE35572 (Get FASTA)   NCBI Sequence Viewer  
  BAE38723 (Get FASTA)   NCBI Sequence Viewer  
  BAE38810 (Get FASTA)   NCBI Sequence Viewer  
  BAE39265 (Get FASTA)   NCBI Sequence Viewer  
  BAE39847 (Get FASTA)   NCBI Sequence Viewer  
  BAE39957 (Get FASTA)   NCBI Sequence Viewer  
  CAA27307 (Get FASTA)   NCBI Sequence Viewer  
  CAA27396 (Get FASTA)   NCBI Sequence Viewer  
  EDL19081 (Get FASTA)   NCBI Sequence Viewer  
  P60710 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_031419   ⟸   NM_007393
- UniProtKB: P60710 (UniProtKB/Swiss-Prot),   B2RRX1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000132135   ⟸   ENSMUST00000163829
RefSeq Acc Id: ENSMUSP00000130611   ⟸   ENSMUST00000171419
RefSeq Acc Id: ENSMUSP00000101823   ⟸   ENSMUST00000106216
RefSeq Acc Id: ENSMUSP00000098066   ⟸   ENSMUST00000100497
RefSeq Acc Id: ENSMUSP00000127663   ⟸   ENSMUST00000167721

Promoters
RGD ID:6888648
Promoter ID:EPDNEW_M7775
Type:initiation region
Name:Actb_1
Description:Mus musculus actin, beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385142,906,725 - 142,906,785EPDNEW
RGD ID:6836989
Promoter ID:MM_KWN:44716
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000100497
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365143,666,896 - 143,668,322 (-)MPROMDB
RGD ID:6836988
Promoter ID:MM_KWN:44717
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000031564
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365143,668,331 - 143,669,357 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:87904 AgrOrtholog
Ensembl Genes ENSMUSG00000029580 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000098066 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000101823 UniProtKB/TrEMBL
  ENSMUSP00000127663 UniProtKB/TrEMBL
  ENSMUSP00000130611 UniProtKB/TrEMBL
  ENSMUSP00000132135 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000100497 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106216 UniProtKB/TrEMBL
  ENSMUST00000163829 UniProtKB/TrEMBL
  ENSMUST00000167721 UniProtKB/TrEMBL
  ENSMUST00000171419 UniProtKB/TrEMBL
InterPro Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin/actin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Actin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:11461 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:87904 ENTREZGENE
NCBI Gene 11461 ENTREZGENE
PANTHER PTHR11937 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Actin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Actb PhenoGen
PRINTS ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTINS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTINS_ACT_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ACTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A1E281_MOUSE UniProtKB/TrEMBL
  ACTB_MOUSE UniProtKB/Swiss-Prot
  B2RRX1 ENTREZGENE, UniProtKB/TrEMBL
  E9Q1F2_MOUSE UniProtKB/TrEMBL
  E9Q2D1_MOUSE UniProtKB/TrEMBL
  E9Q5F4_MOUSE UniProtKB/TrEMBL
  E9Q606_MOUSE UniProtKB/TrEMBL
  O89054_MOUSE UniProtKB/TrEMBL
  P60710 ENTREZGENE
  Q3TIJ9_MOUSE UniProtKB/TrEMBL
  Q3U5R4_MOUSE UniProtKB/TrEMBL
  Q3U804_MOUSE UniProtKB/TrEMBL
  Q3U939_MOUSE UniProtKB/TrEMBL
  Q3UA89_MOUSE UniProtKB/TrEMBL
  Q3UAA9_MOUSE UniProtKB/TrEMBL
  Q3UAF6_MOUSE UniProtKB/TrEMBL
  Q3UAF7_MOUSE UniProtKB/TrEMBL
  Q3UBP6_MOUSE UniProtKB/TrEMBL
  Q3UBQ4_MOUSE UniProtKB/TrEMBL
  Q3UCF8_MOUSE UniProtKB/TrEMBL
  Q3UGS0_MOUSE UniProtKB/TrEMBL
  Q61276_MOUSE UniProtKB/TrEMBL
  Q6IWE2_MOUSE UniProtKB/TrEMBL
  Q99NC5_MOUSE UniProtKB/TrEMBL
UniProt Secondary P02570 UniProtKB/Swiss-Prot
  P70514 UniProtKB/Swiss-Prot
  P99021 UniProtKB/Swiss-Prot
  Q11211 UniProtKB/Swiss-Prot
  Q3TI89 UniProtKB/Swiss-Prot
  Q3TVP6 UniProtKB/Swiss-Prot
  Q64316 UniProtKB/Swiss-Prot
  Q6ZWM3 UniProtKB/Swiss-Prot