Vsir (V-set immunoregulatory receptor) - Rat Genome Database

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Gene: Vsir (V-set immunoregulatory receptor) Mus musculus
Analyze
Symbol: Vsir
Name: V-set immunoregulatory receptor
RGD ID: 1614298
MGI Page MGI
Description: Predicted to enable endopeptidase activator activity; enzyme binding activity; and identical protein binding activity. Acts upstream of or within several processes, including negative regulation of CD4-positive, alpha-beta T cell proliferation; negative regulation of T cell cytokine production; and positive regulation of BMP signaling pathway. Located in external side of plasma membrane. Is expressed in several structures, including immune system; liver; lung; male reproductive gland or organ; and small intestine lamina propria. Orthologous to human VSIR (V-set immunoregulatory receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4632428N05Rik; Die; Dies1; differentiation of ESCs 1; Gi24 receptor; PD-1; PD-1H; platelet receptor Gi24; V; V-set domain-containing immunoregulatory receptor; V-type immunoglobulin domain-containing suppressor of T-cell activation; VISTA
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,182,630 - 60,266,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1060,182,630 - 60,208,463 (+)EnsemblGRCm39 Ensembl
GRCm381060,346,851 - 60,430,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,346,851 - 60,372,684 (+)EnsemblGRCm38mm10GRCm38
MGSCv371059,809,599 - 59,835,432 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,742,261 - 59,768,041 (+)NCBIMGSCv36mm8
Celera1061,443,716 - 61,469,794 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1030.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15449545   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:20042595   PMID:20562862   PMID:21383057   PMID:21677750   PMID:21768399   PMID:21873635   PMID:21949185   PMID:22751012   PMID:23799023   PMID:23807506   PMID:24194600   PMID:24743150  
PMID:25267631   PMID:25826454   PMID:25917101   PMID:25964334   PMID:26157131   PMID:26228159   PMID:27626380   PMID:27721458   PMID:28469254   PMID:28479600   PMID:28729608   PMID:29216931  
PMID:29267882   PMID:30306644   PMID:30550561   PMID:31340983   PMID:31645726   PMID:31790558   PMID:31803182   PMID:31826980   PMID:31949051   PMID:32143848   PMID:32586651   PMID:32929361  
PMID:34006329   PMID:34752423   PMID:34905507   PMID:35933919   PMID:36450109   PMID:37460553   PMID:38060328   PMID:38175754  


Genomics

Comparative Map Data
Vsir
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,182,630 - 60,266,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1060,182,630 - 60,208,463 (+)EnsemblGRCm39 Ensembl
GRCm381060,346,851 - 60,430,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,346,851 - 60,372,684 (+)EnsemblGRCm38mm10GRCm38
MGSCv371059,809,599 - 59,835,432 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,742,261 - 59,768,041 (+)NCBIMGSCv36mm8
Celera1061,443,716 - 61,469,794 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1030.26NCBI
VSIR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381071,747,556 - 71,773,520 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1071,747,556 - 71,773,520 (-)EnsemblGRCh38hg38GRCh38
GRCh371073,507,313 - 73,533,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,177,319 - 73,203,343 (-)NCBINCBI36Build 36hg18NCBI36
Celera1066,789,752 - 66,815,911 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,501,145 - 67,527,120 (-)NCBIHuRef
CHM1_11073,789,445 - 73,815,328 (-)NCBICHM1_1
T2T-CHM13v2.01072,618,370 - 72,644,252 (-)NCBIT2T-CHM13v2.0
Vsir
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,824,493 - 28,850,175 (+)NCBIGRCr8
mRatBN7.22028,281,582 - 28,307,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2028,281,596 - 28,303,878 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2029,296,385 - 29,322,002 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,682,693 - 28,708,310 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,425,156 - 29,450,774 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,897,543 - 29,923,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,897,594 - 29,919,998 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,709,023 - 31,734,846 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,662,633 - 27,684,891 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2029,719,788 - 29,742,034 (+)NCBICelera
Cytogenetic Map20q11NCBI
Vsir
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543719,716,466 - 19,743,428 (+)NCBIChiLan1.0ChiLan1.0
VSIR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2883,898,498 - 83,924,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11083,900,069 - 83,929,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01068,218,230 - 68,243,687 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11070,742,062 - 70,767,613 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,742,062 - 70,767,613 (-)Ensemblpanpan1.1panPan2
VSIR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,504,888 - 22,530,702 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,459,363 - 22,530,687 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha422,640,897 - 22,668,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0422,779,509 - 22,807,057 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl422,783,285 - 22,805,226 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1422,685,865 - 22,713,397 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0422,884,409 - 22,911,939 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0423,238,917 - 23,266,458 (-)NCBIUU_Cfam_GSD_1.0
VSIR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,666,624 - 74,693,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,667,081 - 74,693,347 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,558,168 - 80,584,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VSIR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,516,012 - 59,538,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl959,516,073 - 59,542,242 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604820,159,695 - 20,182,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vsir
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247545,665,445 - 5,686,692 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247545,664,899 - 5,686,675 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vsir
2991 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3959
Count of miRNA genes:786
Interacting mature miRNAs:1069
Transcripts:ENSMUST00000020301, ENSMUST00000105459, ENSMUST00000105460, ENSMUST00000164027, ENSMUST00000169139, ENSMUST00000169621, ENSMUST00000170507
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103097449964974630Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103157713665577284Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103377599670835830Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4123732675237326Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104557609669135830Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104627609669235830Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104797449970112651Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105648015660940841Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_380449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC079082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY202363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF426799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH987485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HH987487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN602184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020301   ⟹   ENSMUSP00000020301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,630 - 60,208,463 (+)Ensembl
GRCm38.p6 Ensembl1060,346,851 - 60,372,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105459   ⟹   ENSMUSP00000101099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,185,102 - 60,205,072 (+)Ensembl
GRCm38.p6 Ensembl1060,349,323 - 60,369,293 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105460   ⟹   ENSMUSP00000101100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,630 - 60,208,463 (+)Ensembl
GRCm38.p6 Ensembl1060,346,851 - 60,372,684 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,684 - 60,193,995 (+)Ensembl
GRCm38.p6 Ensembl1060,346,905 - 60,358,216 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,763 - 60,194,817 (+)Ensembl
GRCm38.p6 Ensembl1060,346,984 - 60,359,038 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,686 - 60,193,777 (+)Ensembl
GRCm38.p6 Ensembl1060,346,907 - 60,357,998 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170507   ⟹   ENSMUSP00000127569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1060,182,791 - 60,203,547 (+)Ensembl
GRCm38.p6 Ensembl1060,347,012 - 60,367,768 (+)Ensembl
RefSeq Acc Id: NM_001159572   ⟹   NP_001153044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,182,630 - 60,208,463 (+)NCBI
GRCm381060,346,851 - 60,372,684 (+)NCBI
MGSCv371059,809,599 - 59,835,432 (+)RGD
Celera1061,443,716 - 61,469,794 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028732   ⟹   NP_083008
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,182,630 - 60,208,463 (+)NCBI
GRCm381060,346,851 - 60,372,684 (+)NCBI
MGSCv371059,809,599 - 59,835,432 (+)RGD
Celera1061,443,716 - 61,469,794 (+)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_380449
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391060,185,107 - 60,266,073 (+)NCBI
GRCm381060,349,328 - 60,430,294 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083008   ⟸   NM_028732
- Peptide Label: isoform 1 precursor
- UniProtKB: A0A171EBK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153044   ⟸   NM_001159572
- Peptide Label: isoform 2 precursor
- UniProtKB: E9PUF5 (UniProtKB/Swiss-Prot),   A3RLQ7 (UniProtKB/Swiss-Prot),   Q6KAT9 (UniProtKB/Swiss-Prot),   Q9D659 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000127569   ⟸   ENSMUST00000170507
RefSeq Acc Id: ENSMUSP00000101099   ⟸   ENSMUST00000105459
RefSeq Acc Id: ENSMUSP00000101100   ⟸   ENSMUST00000105460
RefSeq Acc Id: ENSMUSP00000020301   ⟸   ENSMUST00000020301
Protein Domains
Ig-like   Ig-like V-type   Immunoglobulin V-set

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D659-F1-model_v2 AlphaFold Q9D659 1-308 view protein structure

Promoters
RGD ID:6818781
Promoter ID:MM_KWN:4233
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:NM_001159572,   NM_028732
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,809,536 - 59,810,036 (+)MPROMDB
RGD ID:6818782
Promoter ID:MM_KWN:4234
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:ENSMUST00000105459,   UC007FEY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,812,011 - 59,812,562 (+)MPROMDB
RGD ID:6846674
Promoter ID:MM_ACW:4794
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung
Transcripts:4632428N05RIK.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361059,832,049 - 59,832,549 (+)MPROMDB
RGD ID:8672066
Promoter ID:EPDNEW_M14063
Type:initiation region
Name:Vsir_1
Description:Mus musculus V-set immunoregulatory receptor , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381060,346,907 - 60,346,967EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921298 AgrOrtholog
Ensembl Genes ENSMUSG00000020101 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020301 ENTREZGENE
  ENSMUST00000020301.14 UniProtKB/TrEMBL
  ENSMUST00000105459.2 UniProtKB/TrEMBL
  ENSMUST00000105460 ENTREZGENE
  ENSMUST00000105460.8 UniProtKB/Swiss-Prot
  ENSMUST00000170507.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VISTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74048 UniProtKB/Swiss-Prot
MGD MGI:1921298 ENTREZGENE
NCBI Gene 74048 ENTREZGENE
PANTHER PTHR44819 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE IMMUNOGLOBULIN DOMAIN-CONTAINING SUPPRESSOR OF T-CELL ACTIVATION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vsir PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A171EBK7 ENTREZGENE, UniProtKB/TrEMBL
  A3RLQ7 ENTREZGENE
  D3Z7B7_MOUSE UniProtKB/TrEMBL
  E9PUF5 ENTREZGENE
  E9Q251_MOUSE UniProtKB/TrEMBL
  Q6KAT9 ENTREZGENE
  Q9D659 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A3RLQ7 UniProtKB/Swiss-Prot
  E9PUF5 UniProtKB/Swiss-Prot
  Q6KAT9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 Vsir  V-set immunoregulatory receptor  4632428N05Rik  RIKEN cDNA 4632428N05 gene  Symbol and/or name change 5135510 APPROVED