Lgals9 (lectin, galactose binding, soluble 9) - Rat Genome Database

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Gene: Lgals9 (lectin, galactose binding, soluble 9) Mus musculus
Analyze
Symbol: Lgals9
Name: lectin, galactose binding, soluble 9
RGD ID: 10868
MGI Page MGI
Description: Exhibits several functions, including carbohydrate binding activity; galactoside binding activity; and protein serine/threonine kinase activator activity. Involved in several processes, including regulation of cytokine production; regulation of defense response; and regulation of leukocyte activation. Localizes to cytoplasm and nucleus. Is expressed in several structures, including cardiovascular system; hemolymphoid system; intestine; liver; and metanephros. Orthologous to several human genes including LGALS9 (galectin 9); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2-butoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA407335; AI194909; AI265545; gal; gal-9; galect; galectin-9; lectin, galactose binding, soluble 5; Lg; LGA; LGALS35; Lgals5; null
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,853,805 - 78,875,750 (-)NCBIGRCm39mm39
GRCm39 Ensembl1178,853,800 - 78,875,772 (-)Ensembl
GRCm381178,962,979 - 78,984,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,962,974 - 78,984,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,776,481 - 78,798,426 (-)NCBIGRCm37mm9NCBIm37
MGSCv361178,779,590 - 78,801,026 (-)NCBImm8
Celera1188,596,004 - 88,617,949 (-)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to interferon-gamma  (ISO)
cellular response to virus  (IMP)
chemotaxis  (IEA)
ERK1 and ERK2 cascade  (ISO)
female pregnancy  (IDA)
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  (ISA)
immune system process  (IEA)
inflammatory response  (ISO)
maintenance of protein location  (IDA)
maternal process involved in female pregnancy  (ISO)
mature conventional dendritic cell differentiation  (ISO)
natural killer cell tolerance induction  (ISO)
negative regulation of activated T cell proliferation  (ISO)
negative regulation of CD4-positive, alpha-beta T cell proliferation  (IBA,IMP)
negative regulation of chemokine production  (ISO)
negative regulation of gene expression  (IMP)
negative regulation of inflammatory response  (IMP)
negative regulation of interferon-gamma production  (IBA,IDA,IMP)
negative regulation of mast cell degranulation  (ISO)
negative regulation of natural killer cell activation  (IMP)
negative regulation of natural killer cell degranulation  (IMP)
negative regulation of natural killer cell mediated cytotoxicity  (ISO)
negative regulation of tumor necrosis factor production  (ISO)
p38MAPK cascade  (ISO)
positive regulation of activated T cell autonomous cell death  (ISO)
positive regulation of CD4-positive, alpha-beta T cell proliferation  (ISO)
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response  (ISO)
positive regulation of chemokine production  (IMP)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway  (ISO)
positive regulation of cytokine production  (IMP)
positive regulation of defense response to bacterium  (IMP)
positive regulation of dendritic cell apoptotic process  (ISO)
positive regulation of dendritic cell chemotaxis  (ISO)
positive regulation of dendritic cell differentiation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of gene expression  (IBA,IMP)
positive regulation of I-kappaB kinase/NF-kappaB signaling  (ISO)
positive regulation of innate immune response  (IMP)
positive regulation of interferon-gamma production  (ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-1 production  (IMP)
positive regulation of interleukin-10 production  (IMP)
positive regulation of interleukin-12 production  (ISO)
positive regulation of interleukin-13 production  (ISO)
positive regulation of interleukin-4 production  (ISO)
positive regulation of interleukin-6 production  (IMP)
positive regulation of interleukin-8 production  (ISO)
positive regulation of macrophage activation  (IMP)
positive regulation of monocyte chemotactic protein-1 production  (ISO)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of NIK/NF-kappaB signaling  (ISO)
positive regulation of oxidoreductase activity  (IDA)
positive regulation of pathway-restricted SMAD protein phosphorylation  (IMP)
positive regulation of regulatory T cell differentiation  (IMP)
positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell  (ISO)
positive regulation of T cell migration  (IDA)
positive regulation of transcription regulatory region DNA binding  (IMP)
positive regulation of transforming growth factor beta production  (ISO)
positive regulation of tumor necrosis factor production  (IMP)
positive regulation of viral entry into host cell  (ISO)
regulation of interleukin-4 production  (ISO)
regulation of interleukin-5 production  (ISO)
regulation of natural killer cell differentiation  (IMP)
regulation of p38MAPK cascade  (ISO)
regulation of T cell chemotaxis  (IDA)
regulation of T cell differentiation in thymus  (IMP)
regulation of T-helper 17 type immune response  (IMP)
response to interleukin-1  (ISO)
response to lipopolysaccharide  (IMP)
toll-like receptor 2 signaling pathway  (ISO)
toll-like receptor 3 signaling pathway  (ISO)
toll-like receptor 4 signaling pathway  (ISO)

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:7890611   PMID:8674632   PMID:8827514   PMID:8873770   PMID:9038233   PMID:9153289   PMID:9196007   PMID:9321482   PMID:9566950   PMID:9653646   PMID:10349636   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11839756   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16286920   PMID:16602821   PMID:16990264  
PMID:17560833   PMID:18005988   PMID:18282810   PMID:18346632   PMID:18579572   PMID:18826117   PMID:18974023   PMID:19017954   PMID:19234217   PMID:19362679   PMID:19670381   PMID:19776007  
PMID:19782405   PMID:19800850   PMID:19851072   PMID:20463811   PMID:20937702   PMID:21146220   PMID:21267068   PMID:21385853   PMID:21426359   PMID:21575348   PMID:21670307   PMID:21873635  
PMID:22021615   PMID:22052881   PMID:22341088   PMID:22469568   PMID:22627368   PMID:22677125   PMID:23118208   PMID:23144904   PMID:23242525   PMID:23296703   PMID:23408620   PMID:23585851  
PMID:23657851   PMID:23667648   PMID:23751344   PMID:23817958   PMID:23836896   PMID:23937658   PMID:24003143   PMID:24083426   PMID:24333756   PMID:24477688   PMID:24958847   PMID:25065622  
PMID:25158758   PMID:25450716   PMID:25578313   PMID:25898318   PMID:25931247   PMID:26278059   PMID:26582205   PMID:28071719   PMID:28394331   PMID:28704475   PMID:28877989   PMID:28951537  
PMID:28990062   PMID:29242193   PMID:29433546   PMID:29458010   PMID:29530978   PMID:29611821   PMID:29651447   PMID:29844236   PMID:30120235   PMID:30196744   PMID:30291028   PMID:30333137  
PMID:30763585   PMID:31661141   PMID:31937306   PMID:31969388   PMID:31995728   PMID:32325033   PMID:32380082   PMID:32855403  


Genomics

Comparative Map Data
Lgals9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,853,805 - 78,875,750 (-)NCBIGRCm39mm39
GRCm39 Ensembl1178,853,800 - 78,875,772 (-)Ensembl
GRCm381178,962,979 - 78,984,924 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,962,974 - 78,984,946 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,776,481 - 78,798,426 (-)NCBIGRCm37mm9NCBIm37
MGSCv361178,779,590 - 78,801,026 (-)NCBImm8
Celera1188,596,004 - 88,617,949 (-)NCBICelera
Cytogenetic Map11B5NCBI
LGALS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1727,629,798 - 27,649,560 (+)EnsemblGRCh38hg38GRCh38
GRCh381727,631,172 - 27,649,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371725,958,214 - 25,976,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361722,982,301 - 23,000,713 (+)NCBINCBI36hg18NCBI36
Build 341722,982,362 - 23,000,707NCBI
Celera1722,819,983 - 22,838,398 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1722,165,323 - 22,183,730 (+)NCBIHuRef
CHM1_11726,020,900 - 26,039,300 (+)NCBICHM1_1
Lgals9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,907,018 - 63,930,224 (-)NCBI
Rnor_6.0 Ensembl1064,737,022 - 64,760,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01064,737,022 - 64,760,195 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01066,863,438 - 66,886,611 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41065,129,006 - 65,152,052 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11065,142,629 - 65,165,675 (-)NCBI
Celera1062,879,287 - 62,902,249 (-)NCBICelera
Cytogenetic Map10q24NCBI
Lgals9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554815,234,125 - 5,249,564 (-)NCBIChiLan1.0ChiLan1.0
LGALS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11729,623,398 - 29,642,959 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1729,623,398 - 29,642,959 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01729,125,460 - 29,145,028 (-)NCBIMhudiblu_PPA_v0panPan3
LGALS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,154,613 - 42,170,423 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,154,702 - 42,170,391 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,311,855 - 41,327,548 (+)NCBI
ROS_Cfam_1.0942,972,410 - 42,988,232 (+)NCBI
UMICH_Zoey_3.1941,753,711 - 41,769,401 (+)NCBI
UNSW_CanFamBas_1.0942,048,540 - 42,064,220 (+)NCBI
UU_Cfam_GSD_1.0942,125,818 - 42,141,545 (+)NCBI
Lgals9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,156,490 - 41,172,295 (+)NCBI
SpeTri2.0NW_0049365384,034,467 - 4,050,240 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LGALS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11244,155,079 - 44,173,634 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,002,236 - 46,021,360 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242599
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11621,421,034 - 21,439,583 (+)NCBI
Lgals9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624786478,048 - 491,086 (+)NCBI

Position Markers
AI194909  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,963,137 - 78,963,267UniSTSGRCm38
MGSCv371178,776,639 - 78,776,769UniSTSGRCm37
Celera1188,596,162 - 88,596,292UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11995.66UniSTS
AI265545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,963,248 - 78,963,527UniSTSGRCm38
MGSCv371178,776,750 - 78,777,029UniSTSGRCm37
Celera1188,596,273 - 88,596,552UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11997.81UniSTS
RH125675  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,963,041 - 78,963,224UniSTSGRCm38
MGSCv371178,776,543 - 78,776,726UniSTSGRCm37
Celera1188,596,066 - 88,596,249UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11996.28UniSTS
Lgals9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map11 UniSTS
D11Bhm83  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,964,400 - 78,964,455UniSTSGRCm38
MGSCv371178,777,902 - 78,777,957UniSTSGRCm37
Celera1188,597,425 - 88,597,480UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.64UniSTS
D11Bhm84  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,967,845 - 78,968,009UniSTSGRCm38
MGSCv371178,781,347 - 78,781,511UniSTSGRCm37
Celera1188,600,870 - 88,601,034UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.66UniSTS
D11Bhm85  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,975,998 - 78,976,051UniSTSGRCm38
MGSCv371178,789,500 - 78,789,553UniSTSGRCm37
Celera1188,609,023 - 88,609,076UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.68UniSTS
Lgals9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
cM Map11 UniSTS
Lgals9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:712
Count of miRNA genes:347
Interacting mature miRNAs:384
Transcripts:ENSMUST00000073001, ENSMUST00000108268, ENSMUST00000108269, ENSMUST00000140073
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000073001   ⟹   ENSMUSP00000072764
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,963,395 - 78,984,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108268   ⟹   ENSMUSP00000103903
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,962,974 - 78,984,946 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108269   ⟹   ENSMUSP00000103904
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,962,979 - 78,984,924 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1178,966,881 - 78,970,330 (-)Ensembl
RefSeq Acc Id: NM_001159301   ⟹   NP_001152773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,853,805 - 78,875,750 (-)NCBI
GRCm381178,962,979 - 78,984,924 (-)ENTREZGENE
MGSCv371178,776,481 - 78,798,426 (-)RGD
Celera1188,596,004 - 88,617,949 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_010708   ⟹   NP_034838
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,853,805 - 78,875,750 (-)NCBI
GRCm381178,962,979 - 78,984,924 (-)ENTREZGENE
MGSCv371178,776,481 - 78,798,426 (-)RGD
Celera1188,596,004 - 88,617,949 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034838   ⟸   NM_010708
- Peptide Label: isoform 1
- UniProtKB: O08573 (UniProtKB/Swiss-Prot),   G3X9T7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152773   ⟸   NM_001159301
- Peptide Label: isoform 2
- UniProtKB: O08573 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103904   ⟸   ENSMUST00000108269
RefSeq Acc Id: ENSMUSP00000103903   ⟸   ENSMUST00000108268
RefSeq Acc Id: ENSMUSP00000072764   ⟸   ENSMUST00000073001
Protein Domains
Galectin

Promoters
RGD ID:6848589
Promoter ID:MM_TRO:1648
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:MTR005988.11.1802.3,   MTR005988.11.1802.4
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,779,119 - 78,779,619 (-)MPROMDB
RGD ID:6821175
Promoter ID:MM_KWN:8738
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000000503
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,783,061 - 78,783,561 (-)MPROMDB
RGD ID:6821174
Promoter ID:MM_KWN:8739
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:ENSMUST00000073001,   NM_010708,   OTTMUST00000000501
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,798,199 - 78,798,699 (-)MPROMDB
RGD ID:8675752
Promoter ID:EPDNEW_M15907
Type:initiation region
Name:Lgals9_1
Description:Mus musculus lectin, galactose binding, soluble 9 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,984,879 - 78,984,939EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109496 AgrOrtholog
Ensembl Genes ENSMUSG00000001123 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000072764 UniProtKB/TrEMBL
  ENSMUSP00000103903 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000103904 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073001 UniProtKB/TrEMBL
  ENSMUST00000108268 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108269 ENTREZGENE, UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16859 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109496 ENTREZGENE
NCBI Gene 16859 ENTREZGENE
PANTHER PTHR11346 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lgals9 PhenoGen
PROSITE GALECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B1AQR8_MOUSE UniProtKB/TrEMBL
  G3X9T7 ENTREZGENE, UniProtKB/TrEMBL
  LEG9_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O08572 UniProtKB/Swiss-Prot
  Q3UKE5 UniProtKB/Swiss-Prot
  Q99L83 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-26 Lgals9  lectin, galactose binding, soluble 9  Lgals5    Data Merged 737654 PROVISIONAL