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ONTOLOGY REPORT - ANNOTATIONS

Term:T cell differentiation
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Accession:GO:0030217 term browser browse the term
Definition:The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
Comment:Note that the term 'thymocyte differentiation' was merged into this term because thymocytes are T cells, and thus the term was essentially redundant. Note that immunologists typically use the word 'development' to refer to cells of B or T cell lineages undergoing the process that GO describes as 'cell differentiation'.
Synonyms:exact_synonym: T lymphocyte differentiation
 related_synonym: T cell development
 alt_id: GO:0042112;   GO:0046652


show annotations for term's descendants           Sort by:
T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of IMP (MGI:72798|PMID:7731963)
(MGI:2155238|PMID:9478961)		 MGI PMID:7731963 PMID:9478961 MGI:2155238 MGI:72798 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Bcl11a B cell CLL/lymphoma 11A (zinc finger protein) acts_upstream_of_or_within IMP (MGI:2662805|PMID:12717432) MGI PMID:12717432 MGI:2662805 NCBI chr11:24,026,498...24,123,558
Ensembl chr11:24,028,056...24,124,123 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IGI
IMP		 (MGI:893318|PMID:9215624)
(MGI:2156164|PMID:8170972)		 MGI PMID:8170972 PMID:9215624 MGI:2156164 MGI:893318 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Bcl2a1d B cell leukemia/lymphoma 2 related protein A1d acts_upstream_of_or_within IMP (MGI:3531056|PMID:15728238) MGI PMID:15728238 MGI:3531056 NCBI chr 9:88,605,341...88,613,903
Ensembl chr 9:88,605,338...88,613,967 		JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit NOT|acts_upstream_of_or_within IMP (MGI:3691409|PMID:17028169) MGI PMID:17028169 MGI:3691409 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,332...52,566,843 		JBrowse link
G Cd4 CD4 antigen involved_in ISO
ISS		 (MGI:3687440|PMID:1533274) MGI
UniProt		 PMID:1533274 GO_REF:0000096 MGI:3687440 MGI:4834177 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:2680853|PMID:14608382) MGI PMID:14608382 MGI:2680853 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IDA (MGI:3044313|PMID:15146182) UniProt PMID:15146182 MGI:3044313 NCBI chr 2:119,156,265...119,166,147
Ensembl chr 2:119,156,265...119,166,443 		JBrowse link
G Dtx1 deltex 1, E3 ubiquitin ligase acts_upstream_of IDA (MGI:2663321|PMID:12794108) MGI PMID:12794108 MGI:2663321 NCBI chr 5:120,818,268...120,849,755
Ensembl chr 5:120,818,267...120,849,992 		JBrowse link
G Egr1 early growth response 1 acts_upstream_of_or_within IMP (MGI:2183854|PMID:12165491) MGI PMID:12165491 MGI:2183854 NCBI chr18:34,994,260...34,998,009
Ensembl chr18:34,992,876...34,998,037 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in IMP (MGI:5464938|PMID:23169635) MGI PMID:23169635 MGI:5464938 NCBI chr10:24,513,812...24,588,057
Ensembl chr10:24,513,812...24,588,057 		JBrowse link
G Fadd Fas (TNFRSF6)-associated via death domain involved_in TAS (MGI:5306292|PMID:18309324) UniProt PMID:18309324 MGI:5306292 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IDA
ISO		 (MGI:68274|PMID:7956841)
(MGI:67040|PMID:8088776)		 MGI PMID:7956841 PMID:8088776 MGI:67040 MGI:68274 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 ISO RGD PMID:16103028 RGD:1579831 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Gpr89 G protein-coupled receptor 89 involved_in IMP (MGI:6405642|PMID:32220963) UniProt PMID:32220963 MGI:6405642 NCBI chr 3:96,775,614...96,812,662
Ensembl chr 3:96,775,597...96,812,662 		JBrowse link
G Hs1bp3 HCLS1 binding protein 3 acts_upstream_of_or_within TAS (MGI:1891513|PMID:10590261) MGI PMID:10590261 MGI:1891513 NCBI chr12:8,363,389...8,393,824
Ensembl chr12:8,363,432...8,393,824 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (MGI:68746|PMID:7923373) MGI PMID:7923373 MGI:68746 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Ikzf3 IKAROS family zinc finger 3 involved_in IMP (MGI:6740265|PMID:34155405) UniProt PMID:34155405 MGI:6740265 NCBI chr11:98,355,436...98,437,157
Ensembl chr11:98,355,728...98,436,857 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within IMP
IGI		 (MGI:893318|PMID:9215624) MGI PMID:9215624 MGI:893318 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (MGI:2679165|PMID:14517551) MGI PMID:14517551 MGI:2679165 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Jag2 jagged 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:112,871,423...112,893,432
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Kat7 K(lysine) acetyltransferase 7 involved_in IMP (MGI:6393224|PMID:27733580) GO_Central PMID:27733580 MGI:6393224 NCBI chr11:95,162,679...95,201,085
Ensembl chr11:95,165,085...95,201,072 		JBrowse link
G Kdelr1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 acts_upstream_of_or_within IMP (MGI:5689875|PMID:26438836) MGI PMID:26438836 MGI:5689875 NCBI chr 7:45,522,264...45,533,150
Ensembl chr 7:45,522,196...45,533,156 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in IMP (MGI:2387257|PMID:12354381) UniProt PMID:12354381 MGI:2387257 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Lck lymphocyte protein tyrosine kinase involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:129,442,137...129,467,434
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Lep leptin involved_in IMP (MGI:1277764|PMID:9732873) UniProt PMID:9732873 MGI:1277764 NCBI chr 6:29,060,220...29,073,875
Ensembl chr 6:29,060,219...29,073,876 		JBrowse link
G Lepr leptin receptor involved_in IMP (MGI:1277764|PMID:9732873) UniProt PMID:9732873 MGI:1277764 NCBI chr 4:101,574,393...101,676,375
Ensembl chr 4:101,574,601...101,672,549 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IMP (MGI:3838059|PMID:19217325) UniProt PMID:19217325 MGI:3838059 NCBI chr 5:140,593,096...140,601,300
Ensembl chr 5:140,593,075...140,601,300 		JBrowse link
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (MGI:3838096|PMID:19179613) MGI PMID:19179613 MGI:3838096 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Lmbr1l limb region 1 like involved_in IMP (MGI:6303730|PMID:31073040) UniProt PMID:31073040 MGI:6303730 NCBI chr15:98,801,799...98,815,979
Ensembl chr15:98,801,798...98,816,112 		JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 acts_upstream_of_or_within IMP (MGI:1289938|PMID:9768749) MGI PMID:9768749 MGI:1289938 NCBI chr 8:106,785,450...106,857,169
Ensembl chr 8:106,785,472...106,857,169 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (MGI:5906114|PMID:26019294)
(MGI:6357443|PMID:31182790)		 MGI PMID:26019294 PMID:31182790 MGI:5906114 MGI:6357443 NCBI chr16:55,631,740...55,659,004
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in ISS
ISO		 (MGI:3694283|PMID:16439204) UniProt
MGI		 PMID:16439204 GO_REF:0000096 MGI:3694283 MGI:4834177 NCBI chr 1:75,006,505...75,101,870
Ensembl chr 1:75,006,298...75,101,844 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of IDA (MGI:2663321|PMID:12794108) MGI PMID:12794108 MGI:2663321 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351 		JBrowse link
G Patz1 POZ (BTB) and AT hook containing zinc finger 1 acts_upstream_of_or_within IDA (MGI:3662835|PMID:16491076) MGI PMID:16491076 MGI:3662835 NCBI chr11:3,239,131...3,259,083
Ensembl chr11:3,238,874...3,259,083 		JBrowse link
G Pknox1 Pbx/knotted 1 homeobox acts_upstream_of_or_within IMP (MGI:3610703|PMID:16314502) MGI PMID:16314502 MGI:3610703 NCBI chr17:31,783,688...31,826,667
Ensembl chr17:31,783,708...31,826,667 		JBrowse link
G Ppp3cb protein phosphatase 3, catalytic subunit, beta isoform acts_upstream_of_or_within IMP (MGI:2182491|PMID:12091710) MGI PMID:12091710 MGI:2182491 NCBI chr14:20,549,432...20,596,641
Ensembl chr14:20,549,432...20,596,641 		JBrowse link
G Prex1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 acts_upstream_of_or_within IGI (MGI:4939305|PMID:21178006) MGI PMID:21178006 MGI:4939305 NCBI chr 2:166,408,265...166,555,752
Ensembl chr 2:166,408,262...166,555,752 		JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in IMP (MGI:1096020|PMID:9271584) UniProt PMID:9271584 MGI:1096020 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:3042327|PMID:14752163)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:14752163 PMID:21873635 MGI:3042327 MGI:6201960 NCBI chr 3:103,763,891...103,819,568
Ensembl chr 3:103,767,111...103,819,563 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in IMP (MGI:3521537|PMID:15557316), (MGI:61371|PMID:8334701) UniProt PMID:8334701 PMID:15557316 MGI:3521537 MGI:61371 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K ISO RGD PMID:17434290 RGD:15036800 NCBI chr10:27,950,406...28,473,393
Ensembl chr10:27,950,816...28,473,393 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (MGI:2179579|PMID:11980719), (MGI:3709144|PMID:14595002) MGI PMID:11980719 PMID:14595002 MGI:2179579 MGI:3709144 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Rhoh ras homolog family member H involved_in IDA (MGI:3686961|PMID:17028588), (MGI:3822992|PMID:17119112) UniProt PMID:17028588 PMID:17119112 MGI:3686961 MGI:3822992 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Runx2 runt related transcription factor 2 acts_upstream_of_or_within IDA (MGI:70850|PMID:7862157) MGI PMID:7862157 MGI:70850 NCBI chr17:44,806,874...45,125,684
Ensembl chr17:44,806,874...45,125,684 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of IDA (MGI:4940419|PMID:21300860) MGI PMID:21300860 MGI:4940419 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 involved_in IMP (MGI:3813366|PMID:9174623) BHF-UCL PMID:9174623 MGI:3813366 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Sp3 trans-acting transcription factor 3 acts_upstream_of_or_within IMP (MGI:2670314|PMID:12676787) MGI PMID:12676787 MGI:2670314 NCBI chr 2:72,766,774...72,810,790
Ensembl chr 2:72,766,771...72,810,790 		JBrowse link
G Tbx21 T-box 21 acts_upstream_of_or_within IMP (MGI:4454353|PMID:20399120) MGI PMID:20399120 MGI:4454353 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 acts_upstream_of_or_within IMP (MGI:3054344|PMID:15294947) MGI PMID:15294947 MGI:3054344 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IMP (MGI:3718815|PMID:17481928) MGI PMID:17481928 MGI:3718815 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in IMP (MGI:5438168|PMID:22585710) MGI PMID:22585710 MGI:5438168 NCBI chr10:39,488,930...39,531,303
Ensembl chr10:39,488,930...39,531,303 		JBrowse link
G Vav1 vav 1 oncogene acts_upstream_of_or_within TAS
IGI		 (MGI:2388463|PMID:11070165)
(MGI:4939305|PMID:21178006)		 MGI PMID:11070165 PMID:21178006 MGI:2388463 MGI:4939305 NCBI chr17:57,586,080...57,636,236
Ensembl chr17:57,586,100...57,635,031 		JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of IDA (MGI:4358631|PMID:19723499) MGI PMID:19723499 MGI:4358631 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031 		JBrowse link
G Wwp1 WW domain containing E3 ubiquitin protein ligase 1 involved_in TAS (MGI:3688077|PMID:11375995) UniProt PMID:11375995 MGI:3688077 NCBI chr 4:19,608,296...19,709,004
Ensembl chr 4:19,608,303...19,708,993 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of IMP (MGI:893249|PMID:9208839) MGI PMID:9208839 MGI:893249 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (MGI:4399009|PMID:18025176) MGI PMID:18025176 MGI:4399009 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) acts_upstream_of_or_within IGI (MGI:4399009|PMID:18025176) MGI PMID:18025176 MGI:4399009 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Ada adenosine deaminase acts_upstream_of IMP (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)
(MGI:3620422|PMID:12163459), (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)		 MGI PMID:11067867 PMID:12163459 PMID:16670300 MGI:3620422 MGI:3690682 MGI:3774231 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Anxa1 annexin A1 involved_in IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:4943619|PMID:20139728)		 GO_Central
BHF-UCL		 PMID:20139728 PMID:21873635 MGI:4943619 MGI:6201960 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (MGI:2662810|PMID:12717433) MGI PMID:12717433 MGI:2662810 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (MGI:3700903|PMID:17210642) MGI PMID:17210642 MGI:3700903 NCBI chr 7:80,104,741...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:5473721|PMID:23334952) MGI PMID:23334952 MGI:5473721 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:3695957|PMID:15855276) MGI PMID:15855276 MGI:3695957 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (MGI:3640275|PMID:9462507) MGI PMID:9462507 MGI:3640275 NCBI chr 3:130,903,946...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Pnp purine-nucleoside phosphorylase acts_upstream_of IMP (MGI:1859999|PMID:10859343), (MGI:3689284|PMID:16964310)
(MGI:86711|PMID:9122228)		 MGI PMID:9122228 PMID:10859343 PMID:16964310 MGI:1859999 MGI:3689284 MGI:86711 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,202,694 		JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in IMP (MGI:5816780|PMID:27657535) MGI PMID:27657535 MGI:5816780 NCBI chr13:55,612,080...55,620,968
Ensembl chr13:55,612,080...55,620,967 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IMP (MGI:3047471|PMID:15247480) MGI PMID:15247480 MGI:3047471 NCBI chr 3:94,280,101...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Rpl22 ribosomal protein L22 acts_upstream_of_or_within IMP (MGI:3718837|PMID:17555992) MGI PMID:17555992 MGI:3718837 NCBI chr 4:152,408,893...152,418,539
Ensembl chr 4:152,410,199...152,418,528 		JBrowse link
G Shh sonic hedgehog acts_upstream_of IMP (MGI:1888832|PMID:10981962) MGI PMID:10981962 MGI:1888832 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (MGI:3640275|PMID:9462507) MGI PMID:9462507 MGI:3640275 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of IMP
IGI		 (MGI:75253|PMID:7630421)
(MGI:893249|PMID:9208839)
(MGI:1096306|PMID:9275205)		 MGI PMID:7630421 PMID:9208839 PMID:9275205 MGI:1096306 MGI:75253 MGI:893249 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
beta selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IGI (MGI:1096306|PMID:9275205) MGI PMID:9275205 MGI:1096306 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IGI (MGI:1096306|PMID:9275205) MGI PMID:9275205 MGI:1096306 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
CD4-positive or CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:3773982|PMID:18228248) MGI PMID:18228248 MGI:3773982 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase acts_upstream_of_or_within IMP (MGI:3656194|PMID:16501569) MGI PMID:16501569 MGI:3656194 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,656...89,478,573 		JBrowse link
G Shh sonic hedgehog involved_in IMP
ISO		 (MGI:3834308|PMID:17227833) BHF-UCL
MGI		 PMID:17227833 GO_REF:0000096 MGI:3834308 MGI:4834177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within IMP (MGI:5913441|PMID:28169274) MGI PMID:28169274 MGI:5913441 NCBI chr 7:127,836,460...127,844,272
Ensembl chr 7:127,836,514...127,844,272 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:5473721|PMID:23334952) MGI PMID:23334952 MGI:5473721 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cd83 CD83 antigen acts_upstream_of IMP (MGI:3054335|PMID:15322158) MGI PMID:15322158 MGI:3054335 NCBI chr13:43,938,588...43,956,609
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IDA (MGI:3697020|PMID:17028180) MGI PMID:17028180 MGI:3697020 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within IMP (MGI:4455099|PMID:20194894) MGI PMID:20194894 MGI:4455099 NCBI chr 6:48,715,981...48,720,729
Ensembl chr 6:48,715,988...48,720,729 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (MGI:1888604|PMID:10926756) MGI PMID:10926756 MGI:1888604 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 involved_in IMP (MGI:3844206|PMID:19047684) UniProt PMID:19047684 MGI:3844206 NCBI chr12:26,492,742...26,506,451
Ensembl chr12:26,492,745...26,506,451 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of IMP (MGI:3607020|PMID:16227612) MGI PMID:16227612 MGI:3607020 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 acts_upstream_of_or_within IMP (MGI:1354431|PMID:10716941) MGI PMID:10716941 MGI:1354431 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
CD4-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in IMP (MGI:2655909|PMID:9545226) UniProt PMID:9545226 MGI:2655909 NCBI chr13:64,509,704...64,518,586
Ensembl chr13:64,507,151...64,518,704 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in
acts_upstream_of		 ISO
IMP		 (PMID:22079196)
(MGI:3700459|PMID:16301745), (MGI:3799419|PMID:18573908)
(MGI:3695768|PMID:16275384)		 CACAO
MGI		 PMID:16275384 PMID:16301745 PMID:18573908 PMID:22079196 MGI:3695768 MGI:3700459 MGI:3799419 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Fut7 fucosyltransferase 7 acts_upstream_of_or_within IMP (MGI:3799419|PMID:18573908) MGI PMID:18573908 MGI:3799419 NCBI chr 2:25,312,363...25,316,386
Ensembl chr 2:25,313,279...25,316,386 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of IMP (MGI:3662823|PMID:16227984) MGI PMID:16227984 MGI:3662823 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within IMP (MGI:1926554|PMID:11030619) MGI PMID:11030619 MGI:1926554 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367 		JBrowse link
G Pla2g2d phospholipase A2, group IID acts_upstream_of_or_within IDA (MGI:3851856|PMID:19564598) MGI PMID:19564598 MGI:3851856 NCBI chr 4:138,503,046...138,509,363
Ensembl chr 4:138,503,046...138,509,357 		JBrowse link
CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD8-positive, alpha-beta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within IMP
IDA		 (MGI:5629467|PMID:25348153) MGI PMID:25348153 MGI:5629467 NCBI chr14:122,148,846...122,153,300
Ensembl chr14:122,148,665...122,153,193 		JBrowse link
CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap1 GTPase, IMAP family member 1 acts_upstream_of_or_within IMP (MGI:4455099|PMID:20194894) MGI PMID:20194894 MGI:4455099 NCBI chr 6:48,715,981...48,720,729
Ensembl chr 6:48,715,988...48,720,729 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IDA (MGI:5751358|PMID:25644000) UniProt PMID:25644000 MGI:5751358 NCBI chr11:58,090,382...58,098,418
Ensembl chr11:58,090,382...58,098,417 		JBrowse link
G Irf1 interferon regulatory factor 1 acts_upstream_of_or_within IMP (MGI:1934722|PMID:11359801) MGI PMID:11359801 MGI:1934722 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Otud5 OTU domain containing 5 acts_upstream_of_or_within IMP (MGI:5621075|PMID:25470037) MGI PMID:25470037 MGI:5621075 NCBI chr  X:7,705,852...7,742,865
Ensembl chr  X:7,707,603...7,742,865 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within IMP (MGI:3590033|PMID:16093716) MGI PMID:16093716 MGI:3590033 NCBI chr 2:147,203,850...147,216,972
Ensembl chr 2:147,203,845...147,235,215 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 acts_upstream_of_or_within IMP (MGI:6392185|PMID:31915251)
(MGI:3712579|PMID:17540904)		 MGI PMID:17540904 PMID:31915251 MGI:3712579 MGI:6392185 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Satb1 special AT-rich sequence binding protein 1 acts_upstream_of_or_within IMP (MGI:1354431|PMID:10716941), (MGI:3577552|PMID:15814699) MGI PMID:10716941 PMID:15814699 MGI:1354431 MGI:3577552 NCBI chr17:52,043,215...52,140,318
Ensembl chr17:52,043,215...52,140,318 		JBrowse link
G Tnfsf8 tumor necrosis factor (ligand) superfamily, member 8 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:3700858|PMID:16177108)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:16177108 PMID:21873635 MGI:3700858 MGI:6201960 NCBI chr 4:63,749,439...63,779,745
Ensembl chr 4:63,749,545...63,779,584 		JBrowse link
CD8-positive, alpha-beta T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in IBA
ISO
IDA		 (MGI:6201960|PMID:21873635)
(MGI:4399030|PMID:14605368)		 GO_Central
MGI
UniProt		 PMID:14605368 PMID:21873635 GO_REF:0000096 MGI:4399030 MGI:4834177 MGI:6201960 NCBI chr 9:118,307,254...118,315,200
Ensembl chr 9:118,307,280...118,315,200 		JBrowse link
G Ifng interferon gamma acts_upstream_of_or_within IDA (MGI:3829555|PMID:17277142) MGI PMID:17277142 MGI:3829555 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
CD8-positive, alpha-beta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:2156164|PMID:8170972) MGI PMID:8170972 MGI:2156164 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:2159528|PMID:11850626), (MGI:3045816|PMID:15078895) UniProt PMID:11850626 PMID:15078895 MGI:2159528 MGI:3045816 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
CD8-positive, gamma-delta intraepithelial T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr9 chemokine (C-C motif) receptor 9 acts_upstream_of_or_within IMP (MGI:5629467|PMID:25348153) MGI PMID:25348153 MGI:5629467 NCBI chr 9:123,596,276...123,612,522
Ensembl chr 9:123,507,504...123,613,395 		JBrowse link
G Gpr18 G protein-coupled receptor 18 acts_upstream_of_or_within IDA
IMP		 (MGI:5629467|PMID:25348153) MGI PMID:25348153 MGI:5629467 NCBI chr14:122,148,846...122,153,300
Ensembl chr14:122,148,665...122,153,193 		JBrowse link
G Klrc1 killer cell lectin-like receptor subfamily C, member 1 involved_in ISO (PMID:18064301) UniProt PMID:18064301 NCBI chr 6:129,642,978...129,659,815
Ensembl chr 6:129,642,978...129,655,936 		JBrowse link
cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd8a CD8 antigen, alpha chain acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:1933767|PMID:1673361)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:1673361 PMID:21873635 MGI:1933767 MGI:6201960 NCBI chr 6:71,350,411...71,356,155
Ensembl chr 6:71,350,411...71,356,157 		JBrowse link
DN2 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 chemokine (C-C motif) receptor 6 involved_in IMP (MGI:5784970|PMID:24638065) UniProt PMID:24638065 MGI:5784970 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (MGI:1312981|PMID:9823897), (MGI:1860400|PMID:10911993) MGI PMID:9823897 PMID:10911993 MGI:1312981 MGI:1860400 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (MGI:1913213|PMID:9875844) MGI PMID:9875844 MGI:1913213 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Xrcc4 X-ray repair complementing defective repair in Chinese hamster cells 4 acts_upstream_of_or_within IMP (MGI:1913213|PMID:9875844) MGI PMID:9875844 MGI:1913213 NCBI chr13:89,997,033...90,237,727
Ensembl chr13:89,922,146...90,237,727 		JBrowse link
DN3 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr6 chemokine (C-C motif) receptor 6 involved_in IMP (MGI:5784970|PMID:24638065) UniProt PMID:24638065 MGI:5784970 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
DN4 thymocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within IGI (MGI:4399009|PMID:18025176) MGI PMID:18025176 MGI:4399009 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) acts_upstream_of_or_within IGI (MGI:4399009|PMID:18025176) MGI PMID:18025176 MGI:4399009 NCBI chr 1:156,386,160...156,477,189
Ensembl chr 1:156,386,356...156,477,138 		JBrowse link
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (MGI:3700903|PMID:17210642) MGI PMID:17210642 MGI:3700903 NCBI chr 7:80,104,741...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
extrathymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btnl1 butyrophilin-like 1 involved_in IMP
IGI		 (MGI:5806345|PMID:27641500) MGI PMID:27641500 MGI:5806345 NCBI chr17:34,596,097...34,605,136
Ensembl chr17:34,596,106...34,605,002 		JBrowse link
G Btnl6 butyrophilin-like 6 involved_in IGI (MGI:5806345|PMID:27641500) MGI PMID:27641500 MGI:5806345 NCBI chr17:34,726,844...34,737,750
Ensembl chr17:34,726,778...34,736,326 		JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within IMP (MGI:1354083|PMID:10704459) MGI PMID:10704459 MGI:1354083 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag2 jagged 2 involved_in IMP (MGI:1342169|PMID:10383933) UniProt PMID:10383933 MGI:1342169 NCBI chr12:112,871,423...112,893,432
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of IMP (MGI:70338|PMID:7807014) MGI PMID:7807014 MGI:70338 NCBI chr 4:129,442,137...129,467,434
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of IMP (MGI:70338|PMID:7807014) MGI PMID:7807014 MGI:70338 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of IDA (MGI:4940419|PMID:21300860) MGI PMID:21300860 MGI:4940419 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 involved_in IMP (MGI:3695974|PMID:17218525), (MGI:6276541|PMID:30413363) UniProt PMID:17218525 PMID:30413363 MGI:3695974 MGI:6276541 NCBI chr 1:133,310,038...133,352,198
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of IMP (MGI:83585|PMID:8790395)
(MGI:77314|PMID:7477352)		 MGI PMID:7477352 PMID:8790395 MGI:77314 MGI:83585 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Tcf7 transcription factor 7, T cell specific involved_in IMP (MGI:6276541|PMID:30413363) UniProt PMID:30413363 MGI:6276541 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
gamma-delta T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scart2 scavenger receptor family member expressed on T cells 2 acts_upstream_of_or_within IDA (MGI:3803061|PMID:18641307) MGI PMID:18641307 MGI:3803061 NCBI chr 7:139,827,192...139,880,647
Ensembl chr 7:139,827,197...139,880,649 		JBrowse link
immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of IMP (MGI:3700903|PMID:17210642) MGI PMID:17210642 MGI:3700903 NCBI chr 7:80,104,741...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Clec4g C-type lectin domain family 4, member g acts_upstream_of IMP (MGI:5475030|PMID:23487419) MGI PMID:23487419 MGI:5475030 NCBI chr 8:3,757,066...3,770,695
Ensembl chr 8:3,757,064...3,770,651 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 acts_upstream_of IMP (MGI:3695084|PMID:16230479) MGI PMID:16230479 MGI:3695084 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of IMP (MGI:3695084|PMID:16230479) MGI PMID:16230479 MGI:3695084 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Ifnar2 interferon (alpha and beta) receptor 2 acts_upstream_of_or_within IDA (MGI:1929548|PMID:11154225) MGI PMID:11154225 MGI:1929548 NCBI chr16:91,166,517...91,202,477
Ensembl chr16:91,169,671...91,202,477 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of IMP (MGI:2176422|PMID:11894098) MGI PMID:11894098 MGI:2176422 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IMP (MGI:3803049|PMID:18617424) MGI PMID:18617424 MGI:3803049 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within IMP (MGI:5608813|PMID:25271321) MGI PMID:25271321 MGI:5608813 NCBI chr 2:28,531,005...28,581,184
Ensembl chr 2:28,531,240...28,581,179 		JBrowse link
negative regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:4355451|PMID:19667090) BHF-UCL PMID:19667090 MGI:4355451 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:1888832|PMID:10981962) MGI PMID:10981962 MGI:1888832 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
negative regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core binding factor beta involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 8:105,897,230...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Runx1 runt related transcription factor 1 involved_in IDA (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
negative regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a2 solute carrier family 4 (anion exchanger), member 2 involved_in IMP (MGI:6840447|PMID:24515893) UniProt PMID:24515893 MGI:6840447 NCBI chr 5:24,628,939...24,645,945
Ensembl chr 5:24,628,835...24,645,948 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:5446998|PMID:22730529), (MGI:6140589|PMID:24880459) UniProt PMID:22730529 PMID:24880459 MGI:5446998 MGI:6140589 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
negative regulation of cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,366,994...51,372,709
Ensembl chr10:51,356,708...51,372,709
Ensembl chr10:51,356,708...51,372,709 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,356,708...51,362,425
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
negative regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Cdkn2a cyclin dependent kinase inhibitor 2A involved_in IMP (MGI:3615850|PMID:15964995) HGNC-UCL PMID:15964995 MGI:3615850 NCBI chr 4:89,192,710...89,212,856
Ensembl chr 4:89,192,708...89,212,890 		JBrowse link
G Clec4g C-type lectin domain family 4, member g acts_upstream_of_or_within IMP (MGI:5475030|PMID:23487419) MGI PMID:23487419 MGI:5475030 NCBI chr 8:3,757,066...3,770,695
Ensembl chr 8:3,757,064...3,770,651 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 acts_upstream_of_or_within IMP (MGI:3695084|PMID:16230479) MGI PMID:16230479 MGI:3695084 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Tmem131l transmembrane 131 like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:83,805,512...83,947,497
Ensembl chr 3:83,804,962...83,947,482 		JBrowse link
negative regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgl2 fibrinogen-like protein 2 acts_upstream_of_or_within IMP (MGI:6188369|PMID:29341118) MGI PMID:29341118 MGI:6188369 NCBI chr 5:21,577,671...21,583,384
Ensembl chr 5:21,577,640...21,583,372 		JBrowse link
negative regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 involved_in IMP (MGI:5320871|PMID:22080863) UniProt PMID:22080863 MGI:5320871 NCBI chr18:67,798,571...67,857,697
Ensembl chr18:67,798,581...67,857,665 		JBrowse link
negative regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 antigen involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr 2:102,641,486...102,732,014
Ensembl chr 2:102,641,486...102,732,010 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 1:60,948,184...60,954,991
Ensembl chr 1:60,926,159...60,954,991 		JBrowse link
G Hspb1 heat shock protein 1 involved_in ISO RGD
MGI		 PMID:30287503 GO_REF:0000096 MGI:4417868 RGD:38549580 NCBI chr 5:135,916,773...135,918,417
Ensembl chr 5:135,916,773...135,918,417 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in IMP (MGI:3803082|PMID:18641303) UniProt PMID:18641303 MGI:3803082 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Lag3 lymphocyte-activation gene 3 involved_in IMP (MGI:3510279|PMID:15485628) UniProt PMID:15485628 MGI:3510279 NCBI chr 6:124,881,322...124,888,668
Ensembl chr 6:124,881,324...124,888,668 		JBrowse link
G Mdk midkine involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:91,760,150...91,762,642
Ensembl chr 2:91,760,150...91,762,642 		JBrowse link
G Mir21a microRNA 21a involved_in ISO (PMID:22387553) BHF-UCL PMID:22387553 NCBI chr11:86,474,893...86,474,984
Ensembl chr11:86,474,893...86,474,984 		JBrowse link
G Mir30b microRNA 30b involved_in ISO (PMID:22387553) BHF-UCL PMID:22387553 NCBI chr15:68,209,264...68,209,359
Ensembl chr15:68,209,264...68,209,359 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IMP (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
G Tug1 taurine upregulated gene 1 ISO RGD PMID:30287503 RGD:38549580 NCBI chr11:3,589,785...3,598,814
Ensembl chr11:3,589,785...3,599,673 		JBrowse link
negative regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (MGI:52620|PMID:7679955) MGI PMID:7679955 MGI:52620 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase acts_upstream_of_or_within IDA (MGI:5449492|PMID:23066153) MGI PMID:23066153 MGI:5449492 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,656...89,478,573 		JBrowse link
G Dtx1 deltex 1, E3 ubiquitin ligase acts_upstream_of_or_within IDA (MGI:2663321|PMID:12794108) MGI PMID:12794108 MGI:2663321 NCBI chr 5:120,818,268...120,849,755
Ensembl chr 5:120,818,267...120,849,992 		JBrowse link
G Ifnb1 interferon beta 1, fibroblast involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:88,440,262...88,441,031
Ensembl chr 4:88,440,262...88,441,011 		JBrowse link
G Nrarp Notch-regulated ankyrin repeat protein acts_upstream_of_or_within IDA (MGI:2663321|PMID:12794108) MGI PMID:12794108 MGI:2663321 NCBI chr 2:25,070,770...25,073,351
Ensembl chr 2:25,070,770...25,073,351 		JBrowse link
G Prdx2 peroxiredoxin 2 acts_upstream_of_or_within IMP (MGI:3796974|PMID:16290204) MGI PMID:16290204 MGI:3796974 NCBI chr 8:85,696,251...85,701,440
Ensembl chr 8:85,696,216...85,701,463 		JBrowse link
negative regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Foxj1 forkhead box J1 involved_in IMP (MGI:3713603|PMID:16339515) BHF-UCL PMID:16339515 MGI:3713603 NCBI chr11:116,221,530...116,226,331
Ensembl chr11:116,221,530...116,226,225 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta acts_upstream_of_or_within IDA (MGI:2177878|PMID:11931770) MGI PMID:11931770 MGI:2177878 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Rag2 recombination activating gene 2 involved_in ISO RGD
MGI		 PMID:30206106 GO_REF:0000096 MGI:4417868 RGD:38508903 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:1888832|PMID:10981962) MGI PMID:10981962 MGI:1888832 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:128,768,188...128,786,018
Ensembl chr 2:128,768,188...128,785,997 		JBrowse link
G Zfp608 zinc finger protein 608 involved_in TAS (MGI:5908329|PMID:23076336) UniProt PMID:23076336 MGI:5908329 NCBI chr18:55,021,117...55,125,690
Ensembl chr18:55,021,120...55,125,627 		JBrowse link
negative regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4ra interleukin 4 receptor, alpha acts_upstream_of_or_within IGI (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Jak3 Janus kinase 3 involved_in IMP (MGI:3719947|PMID:16020505) BHF-UCL PMID:16020505 MGI:3719947 NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4942267|PMID:9670042) BHF-UCL PMID:9670042 MGI:4942267 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
negative regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Il2 interleukin 2 involved_in IGI (MGI:5634593|PMID:25642768) BHF-UCL PMID:25642768 MGI:5634593 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il4 interleukin 4 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (MGI:3817792|PMID:18792410)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:18792410 PMID:21873635 MGI:3817792 MGI:6201960 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915 		JBrowse link
G Smad7 SMAD family member 7 involved_in IMP (MGI:5634593|PMID:25642768) BHF-UCL PMID:25642768 MGI:5634593 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006 		JBrowse link
G Tbx21 T-box 21 involved_in IDA (MGI:4868293|PMID:21151104) UniProt PMID:21151104 MGI:4868293 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (MGI:5450776|PMID:23034280) MGI PMID:23034280 MGI:5450776 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 4:125,012,207...125,021,674
Ensembl chr 4:125,012,216...125,021,633 		JBrowse link
negative regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Loxl3 lysyl oxidase-like 3 involved_in IMP (MGI:5825383|PMID:28065600) UniProt PMID:28065600 MGI:5825383 NCBI chr 6:83,011,186...83,029,547
Ensembl chr 6:83,011,154...83,029,543 		JBrowse link
G Tbx21 T-box 21 involved_in IMP (MGI:4868293|PMID:21151104) UniProt PMID:21151104 MGI:4868293 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
G Tnfsf18 tumor necrosis factor (ligand) superfamily, member 18 involved_in IMP (MGI:5551556|PMID:24107315) UniProt PMID:24107315 MGI:5551556 NCBI chr 1:161,322,226...161,332,859
Ensembl chr 1:161,322,224...161,332,859 		JBrowse link
negative regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of_or_within IGI (MGI:2450484|PMID:12594267) MGI PMID:12594267 MGI:2450484 NCBI chr16:23,783,800...23,807,623
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IGI
IMP		 (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in TAS (MGI:5319622|PMID:11244049) UniProt PMID:11244049 MGI:5319622 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IDA (MGI:3687909|PMID:12242343) UniProt PMID:12242343 MGI:3687909 NCBI chr17:87,414,707...87,445,153
Ensembl chr17:87,415,107...87,445,267 		JBrowse link
G Zfp35 zinc finger protein 35 acts_upstream_of_or_within IMP (MGI:4366385|PMID:19783676) MGI PMID:19783676 MGI:4366385 NCBI chr18:24,122,134...24,138,428
Ensembl chr18:24,122,689...24,138,433 		JBrowse link
negative regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IMP (MGI:3580753|PMID:15917799) MGI PMID:15917799 MGI:3580753 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
negative T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Themis thymocyte selection associated involved_in IMP (MGI:4352756|PMID:19597499), (MGI:4352757|PMID:19597498) UniProt PMID:19597498 PMID:19597499 MGI:4352756 MGI:4352757 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
negative thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) acts_upstream_of_or_within
involved_in		 IGI
IBA		 (MGI:5488556|PMID:23382543)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:23382543 MGI:5488556 MGI:6201960 NCBI chr10:77,865,856...77,879,444
Ensembl chr10:77,865,856...77,879,444 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within IGI
IMP		 (MGI:5488556|PMID:23382543) MGI PMID:23382543 MGI:5488556 NCBI chr10:44,144,325...44,240,295
Ensembl chr10:44,144,354...44,240,287 		JBrowse link
G Ccr7 chemokine (C-C motif) receptor 7 involved_in IMP (MGI:3847607|PMID:17785582) BHF-UCL PMID:17785582 MGI:3847607 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Cd28 CD28 antigen acts_upstream_of_or_within IMP (MGI:1340173|PMID:10429671) MGI PMID:10429671 MGI:1340173 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide acts_upstream_of_or_within IDA (MGI:75253|PMID:7630421) MGI PMID:7630421 MGI:75253 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (MGI:52620|PMID:7679955) MGI PMID:7679955 MGI:52620 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 acts_upstream_of_or_within IMP (MGI:2668308|PMID:12871644) MGI PMID:12871644 MGI:2668308 NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G Fas Fas (TNF receptor superfamily member 6) acts_upstream_of_or_within IMP (MGI:1340173|PMID:10429671) MGI PMID:10429671 MGI:1340173 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:4355451|PMID:19667090) BHF-UCL PMID:19667090 MGI:4355451 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Mink1 misshapen-like kinase 1 (zebrafish) acts_upstream_of_or_within IMP (MGI:3521627|PMID:15608642) MGI PMID:15608642 MGI:3521627 NCBI chr11:70,452,272...70,505,308
Ensembl chr11:70,453,707...70,505,309 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of_or_within IMP (MGI:80946|PMID:8666928) MGI PMID:8666928 MGI:80946 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3834308|PMID:17227833) BHF-UCL PMID:17227833 MGI:3834308 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Spn sialophorin acts_upstream_of_or_within IMP (MGI:1340173|PMID:10429671) MGI PMID:10429671 MGI:1340173 NCBI chr 7:126,731,404...126,743,785
Ensembl chr 7:126,731,404...126,736,995 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IMP (MGI:75253|PMID:7630421) MGI PMID:7630421 MGI:75253 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IMP (MGI:3763962|PMID:16223777) MGI PMID:16223777 MGI:3763962 NCBI chr 2:73,646,853...73,723,094
Ensembl chr 2:73,646,853...73,722,983 		JBrowse link
G Cd1d1 CD1d1 antigen involved_in IMP (MGI:87097|PMID:9133426) CACAO PMID:9133426 MGI:87097 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Itk IL2 inducible T cell kinase acts_upstream_of_or_within
involved_in		 IMP
IGI
IBA		 (MGI:3773943|PMID:18292523)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:18292523 PMID:21873635 MGI:3773943 MGI:6201960 NCBI chr11:46,215,975...46,280,342
Ensembl chr11:46,215,977...46,280,342 		JBrowse link
G Psap prosaposin acts_upstream_of_or_within IMP (MGI:3043877|PMID:14684827) MGI PMID:14684827 MGI:3043877 NCBI chr10:60,113,436...60,138,379
Ensembl chr10:60,113,449...60,138,376 		JBrowse link
G Traj18 T cell receptor alpha joining 18 involved_in IMP (MGI:5694641|PMID:26423156) MGI PMID:26423156 MGI:5694641 NCBI chr14:54,438,234...54,438,299
Ensembl chr14:54,438,234...54,438,299 		JBrowse link
G Txk TXK tyrosine kinase acts_upstream_of_or_within IGI (MGI:3773943|PMID:18292523) MGI PMID:18292523 MGI:3773943 NCBI chr 5:72,853,321...72,910,337
Ensembl chr 5:72,853,321...72,910,120 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:5449456|PMID:23105140) UniProt PMID:23105140 MGI:5449456 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
G Zfp683 zinc finger protein 683 acts_upstream_of_or_within IMP (MGI:5437828|PMID:22885984) MGI PMID:22885984 MGI:5437828 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
NK T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
positive regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)
(MGI:3620422|PMID:12163459), (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)		 MGI PMID:11067867 PMID:12163459 PMID:16670300 MGI:3620422 MGI:3690682 MGI:3774231 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 involved_in IMP (MGI:3695957|PMID:15855276) BHF-UCL PMID:15855276 MGI:3695957 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (MGI:3039326|PMID:15064401) MGI PMID:15064401 MGI:3039326 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Nkap NFKB activating protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Pnp purine-nucleoside phosphorylase acts_upstream_of_or_within IMP
ISO		 (MGI:1859999|PMID:10859343), (MGI:3689284|PMID:16964310)
(MGI:86711|PMID:9122228)		 MGI PMID:9122228 PMID:10859343 PMID:16964310 GO_REF:0000008 MGI:1859999 MGI:2154458 MGI:3689284 MGI:86711 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,202,694 		JBrowse link
G Pnp2 purine-nucleoside phosphorylase 2 acts_upstream_of_or_within ISO (PMID:16964310) MGI PMID:16964310 NCBI chr14:51,193,598...51,202,206
Ensembl chr14:51,193,449...51,202,206 		JBrowse link
G Rhoa ras homolog family member A involved_in IMP (MGI:5640904|PMID:25398325) CACAO PMID:25398325 MGI:5640904 NCBI chr 9:108,183,359...108,215,142
Ensembl chr 9:108,183,328...108,215,133 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3029054|PMID:14764698) BHF-UCL PMID:14764698 MGI:3029054 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IGI (MGI:1096306|PMID:9275205) MGI PMID:9275205 MGI:1096306 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within IMP
IGI		 (MGI:893249|PMID:9208839)
(MGI:1096306|PMID:9275205)
(MGI:75253|PMID:7630421)		 MGI PMID:7630421 PMID:9208839 PMID:9275205 MGI:1096306 MGI:75253 MGI:893249 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
positive regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd83 CD83 antigen acts_upstream_of_or_within IMP (MGI:3054335|PMID:15322158) MGI PMID:15322158 MGI:3054335 NCBI chr13:43,938,588...43,956,609
Ensembl chr13:43,938,251...43,956,608 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IDA (MGI:3697020|PMID:17028180) MGI PMID:17028180 MGI:3697020 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Sash3 SAM and SH3 domain containing 3 acts_upstream_of_or_within IMP (MGI:3607020|PMID:16227612) MGI PMID:16227612 MGI:3607020 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4819294|PMID:20639485) BHF-UCL PMID:20639485 MGI:4819294 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B involved_in IMP (MGI:6140589|PMID:24880459) UniProt PMID:24880459 MGI:6140589 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 acts_upstream_of_or_within
involved_in		 IMP
TAS		 (MGI:3695768|PMID:16275384)
(MGI:3700459|PMID:16301745), (MGI:3799419|PMID:18573908)
(MGI:2653673|PMID:12612578)
(MGI:3795336|PMID:18368049)		 MGI
UniProt		 PMID:12612578 PMID:16275384 PMID:16301745 PMID:18368049 PMID:18573908 MGI:2653673 MGI:3695768 MGI:3700459 MGI:3795336 MGI:3799419 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gimap3 GTPase, IMAP family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:48,741,398...48,747,785
Ensembl chr 6:48,741,398...48,747,785 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 involved_in ISO RGD
MGI		 PMID:15778366 GO_REF:0000096 MGI:4417868 RGD:2303772 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO (PMID:28467828) UniProt PMID:28467828 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:28467828) UniProt PMID:28467828 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of_or_within IMP (MGI:3662823|PMID:16227984) MGI PMID:16227984 MGI:3662823 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Klhl25 kelch-like 25 involved_in IDA
ISO		 (MGI:6765767|PMID:34491895) UniProt
MGI		 PMID:34491895 GO_REF:0000096 MGI:4834177 MGI:6765767 NCBI chr 7:75,498,086...75,523,881
Ensembl chr 7:75,498,058...75,523,879 		JBrowse link
positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 involved_in ISO (PMID:20209097) UniProt PMID:20209097 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
positive regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core binding factor beta involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 8:105,897,230...105,944,621
Ensembl chr 8:105,897,306...105,944,621 		JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,366,994...51,372,709
Ensembl chr10:51,356,708...51,372,709
Ensembl chr10:51,356,708...51,372,709 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,356,708...51,362,425
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Runx1 runt related transcription factor 1 involved_in IDA (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037 		JBrowse link
G Runx3 runt related transcription factor 3 involved_in IMP (MGI:3772948|PMID:18258917) UniProt PMID:18258917 MGI:3772948 NCBI chr 4:134,847,956...134,905,301
Ensembl chr 4:134,847,963...134,905,301 		JBrowse link
positive regulation of cytotoxic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsp90aa1 heat shock protein 90, alpha (cytosolic), class A member 1 involved_in TAS (MGI:3687888|PMID:12855682) UniProt PMID:12855682 MGI:3687888 NCBI chr12:110,657,470...110,662,829
Ensembl chr12:110,657,039...110,669,162 		JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:5,427,551...5,438,731
Ensembl chr19:5,427,551...5,438,731 		JBrowse link
G Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:19187795 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:2317344 NCBI chr17:57,412,113...57,414,757
Ensembl chr17:57,412,325...57,414,757 		JBrowse link
positive regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gimap3 GTPase, IMAP family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:48,741,398...48,747,785
Ensembl chr 6:48,741,398...48,747,785 		JBrowse link
G Gimap5 GTPase, IMAP family member 5 involved_in ISO RGD
MGI		 PMID:11859104 GO_REF:0000096 MGI:4417868 RGD:625608 NCBI chr 6:48,723,131...48,731,134
Ensembl chr 6:48,723,131...48,731,144 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of_or_within IMP (MGI:70338|PMID:7807014) MGI PMID:7807014 MGI:70338 NCBI chr 4:129,442,137...129,467,434
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr 3:130,903,946...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Nckap1l NCK associated protein 1 like involved_in IMP (MGI:3818191|PMID:19015308) UniProt PMID:19015308 MGI:3818191 NCBI chr15:103,362,219...103,411,288
Ensembl chr15:103,362,221...103,407,237 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of_or_within IMP (MGI:70338|PMID:7807014) MGI PMID:7807014 MGI:70338 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA (MGI:4940419|PMID:21300860) MGI PMID:21300860 MGI:4940419 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr 1:133,310,038...133,352,198
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Syk spleen tyrosine kinase acts_upstream_of_or_within IMP (MGI:77314|PMID:7477352)
(MGI:83585|PMID:8790395)		 MGI PMID:7477352 PMID:8790395 MGI:77314 MGI:83585 NCBI chr13:52,736,670...52,802,828
Ensembl chr13:52,737,209...52,802,828 		JBrowse link
positive regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm Bloom syndrome, RecQ like helicase acts_upstream_of_or_within IMP (MGI:3700903|PMID:17210642) MGI PMID:17210642 MGI:3700903 NCBI chr 7:80,104,741...80,184,896
Ensembl chr 7:80,104,481...80,184,867 		JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene involved_in IMP (MGI:3615850|PMID:15964995) HGNC-UCL PMID:15964995 MGI:3615850 NCBI chr 2:18,681,829...18,691,440
Ensembl chr 2:18,681,829...18,691,440 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within IMP (MGI:3695084|PMID:16230479) MGI PMID:16230479 MGI:3695084 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Il1a interleukin 1 alpha involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:129,141,530...129,151,892
Ensembl chr 2:129,141,530...129,151,892 		JBrowse link
G Il1b interleukin 1 beta involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI
RGD		 PMID:8590311 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:7401228 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of_or_within IMP (MGI:2176422|PMID:11894098) MGI PMID:11894098 MGI:2176422 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3029054|PMID:14764698), (MGI:3847177|PMID:19273836) BHF-UCL PMID:14764698 PMID:19273836 MGI:3029054 MGI:3847177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
positive regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd46 CD46 antigen, complement regulatory protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:194,721,279...194,781,149
Ensembl chr 1:194,719,134...194,774,557 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO (PMID:27591323) UniProt PMID:27591323 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:27591323) UniProt PMID:27591323 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Il23a interleukin 23, alpha subunit p19 involved_in IDA (MGI:3027369|PMID:14688363) BHF-UCL PMID:14688363 MGI:3027369 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621 		JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1, cytosolic involved_in IMP (MGI:6119963|PMID:29230018) UniProt PMID:29230018 MGI:6119963 NCBI chr 2:172,994,866...173,001,067
Ensembl chr 2:172,994,841...173,001,066 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:3806904|PMID:18713990) BHF-UCL PMID:18713990 MGI:3806904 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
positive regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit acts_upstream_of_or_within IMP (MGI:2679144|PMID:14557411) MGI PMID:14557411 MGI:2679144 NCBI chr13:94,492,332...94,702,838
Ensembl chr13:94,495,468...94,702,825 		JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit acts_upstream_of_or_within IMP (MGI:2679144|PMID:14557411) MGI PMID:14557411 MGI:2679144 NCBI chr10:80,542,790...80,578,137
Ensembl chr10:80,542,790...80,578,098 		JBrowse link
G Cd1d1 CD1d1 antigen acts_upstream_of_or_within IMP (MGI:87097|PMID:9133426)
(MGI:2180705|PMID:10201995)		 MGI PMID:9133426 PMID:10201995 MGI:2180705 MGI:87097 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within IMP (MGI:1340364|PMID:10366784) MGI PMID:10366784 MGI:1340364 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II acts_upstream_of_or_within IMP (MGI:3686949|PMID:16973387) MGI PMID:16973387 MGI:3686949 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 involved_in IMP (MGI:3807724|PMID:18660811) UniProt PMID:18660811 MGI:3807724 NCBI chr 9:48,563,097...48,747,525
Ensembl chr 9:48,565,597...48,747,522 		JBrowse link
positive regulation of pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb1 zinc finger and BTB domain containing 1 involved_in IMP (MGI:5446979|PMID:22753936) UniProt PMID:22753936 MGI:5446979 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
positive regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy/beclin 1 regulator 1 involved_in ISO
IMP		 (MGI:6284097|PMID:30513302) MGI
UniProt		 PMID:30513302 GO_REF:0000096 MGI:4834177 MGI:6284097 NCBI chr 2:91,560,464...91,749,194
Ensembl chr 2:91,560,479...91,749,194 		JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:23,783,800...23,807,623
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
G Btn2a2 butyrophilin, subfamily 2, member A2 acts_upstream_of_or_within IDA (MGI:5520006|PMID:23589618) MGI PMID:23589618 MGI:5520006 NCBI chr13:23,661,219...23,673,028
Ensembl chr13:23,661,846...23,673,027 		JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within IMP (MGI:5544872|PMID:23793062) MGI PMID:23793062 MGI:5544872 NCBI chr 8:106,412,642...106,424,827
Ensembl chr 8:106,412,906...106,424,819 		JBrowse link
G Cd46 CD46 antigen, complement regulatory protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:194,721,279...194,781,149
Ensembl chr 1:194,719,134...194,774,557 		JBrowse link
G Dusp10 dual specificity phosphatase 10 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:183,766,575...183,807,833
Ensembl chr 1:183,745,499...183,807,833 		JBrowse link
G Foxo3 forkhead box O3 involved_in ISO (PMID:30513302) UniProt PMID:30513302 NCBI chr10:42,057,841...42,152,691
Ensembl chr10:42,057,837...42,152,751 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of_or_within
involved_in		 IMP
ISO
IDA		 (MGI:3574163|PMID:15780990)
(MGI:2450778|PMID:12522256), (MGI:3041050|PMID:15100250), (MGI:3693968|PMID:16769892), (MGI:3697020|PMID:17028180)		 MGI PMID:12522256 PMID:15100250 PMID:15780990 PMID:16769892 PMID:17028180 GO_REF:0000096 MGI:2450778 MGI:3041050 MGI:3574163 MGI:3693968 MGI:3697020 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G H2-M3 histocompatibility 2, M region locus 3 involved_in ISO (PMID:20448110) BHF-UCL PMID:20448110 NCBI chr17:37,581,094...37,585,376
Ensembl chr17:37,581,111...37,585,375 		JBrowse link
G Il2 interleukin 2 involved_in ISO RGD
MGI		 PMID:6233372 GO_REF:0000096 MGI:4417868 RGD:1600097 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il4i1 interleukin 4 induced 1 involved_in IDA
ISO		 (MGI:5753024|PMID:25778793) UniProt
MGI		 PMID:25778793 GO_REF:0000096 MGI:4834177 MGI:5753024 NCBI chr 7:44,485,712...44,490,233
Ensembl chr 7:44,465,811...44,490,233 		JBrowse link
G Il4i1b interleukin 4 induced 1B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:44,465,794...44,490,228
Ensembl chr 7:44,465,811...44,490,233 		JBrowse link
G Kat5 K(lysine) acetyltransferase 5 involved_in ISO
IMP		 (MGI:5576410|PMID:24835996) MGI
UniProt		 PMID:24835996 GO_REF:0000096 MGI:4834177 MGI:5576410 NCBI chr19:5,653,042...5,661,584
Ensembl chr19:5,653,042...5,660,265 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
G Lilrb4a leukocyte immunoglobulin-like receptor, subfamily B, member 4A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,366,994...51,372,709
Ensembl chr10:51,356,708...51,372,709
Ensembl chr10:51,356,708...51,372,709 		JBrowse link
G Lilrb4b leukocyte immunoglobulin-like receptor, subfamily B, member 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:51,356,708...51,362,425
Ensembl chr10:51,356,728...51,362,799 		JBrowse link
G Mir214 microRNA 214 ISO RGD PMID:30287503 RGD:38549580 NCBI chr 1:162,050,937...162,051,046
Ensembl chr 1:162,050,937...162,051,046 		JBrowse link
G Socs1 suppressor of cytokine signaling 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400 		JBrowse link
G Sox12 SRY (sex determining region Y)-box 12 involved_in IMP (MGI:6203502|PMID:30190287) UniProt PMID:30190287 MGI:6203502 NCBI chr 2:152,235,531...152,239,966
Ensembl chr 2:152,235,531...152,239,983 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Vsir V-set immunoregulatory receptor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:60,182,630...60,266,073
Ensembl chr10:60,182,630...60,208,463 		JBrowse link
positive regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:142,888,870...142,892,509
Ensembl chr 5:142,888,870...142,892,509 		JBrowse link
G Actl6a actin-like 6A involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 3:32,762,695...32,781,122
Ensembl chr 3:32,760,447...32,781,122 		JBrowse link
G Actl6b actin-like 6B involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:137,551,623...137,567,844
Ensembl chr 5:137,551,779...137,567,844 		JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:72798|PMID:7731963)
(MGI:2155238|PMID:9478961)		 MGI PMID:7731963 PMID:9478961 MGI:2155238 MGI:72798 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Arid1a AT rich interactive domain 1A (SWI-like) involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080 		JBrowse link
G Arid1b AT rich interactive domain 1B (SWI-like) involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr17:5,044,481...5,397,931
Ensembl chr17:5,044,607...5,397,931 		JBrowse link
G Arid2 AT rich interactive domain 2 (ARID, RFX-like) involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr15:96,185,403...96,303,344
Ensembl chr15:96,185,399...96,302,873 		JBrowse link
G Bad BCL2-associated agonist of cell death acts_upstream_of_or_within IMP (MGI:3029504|PMID:12431371) MGI PMID:12431371 MGI:3029504 NCBI chr19:6,919,229...6,929,273
Ensembl chr19:6,919,229...6,929,267 		JBrowse link
G Brd7 bromodomain containing 7 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 8:89,056,522...89,089,249
Ensembl chr 8:89,057,667...89,088,822 		JBrowse link
G Cd27 CD27 antigen involved_in NAS (MGI:2154603|PMID:11728341) UniProt PMID:11728341 MGI:2154603 NCBI chr 6:125,209,583...125,214,014
Ensembl chr 6:125,209,585...125,213,973 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (MGI:3033881|PMID:9432982)
(MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040)		 MGI PMID:7679955 PMID:8598040 PMID:9432982 MGI:3033881 MGI:52620 MGI:79110 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Cyld CYLD lysine 63 deubiquitinase acts_upstream_of_or_within IMP (MGI:3656194|PMID:16501569) MGI PMID:16501569 MGI:3656194 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,656...89,478,573 		JBrowse link
G Gata3 GATA binding protein 3 involved_in IDA (MGI:5285154|PMID:20696860) UniProt PMID:20696860 MGI:5285154 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G H2-Aa histocompatibility 2, class II antigen A, alpha acts_upstream_of_or_within IDA (MGI:79111|PMID:8598041) MGI PMID:8598041 MGI:79111 NCBI chr17:34,501,718...34,506,797
Ensembl chr17:34,501,718...34,506,797 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa acts_upstream_of_or_within IMP (MGI:79110|PMID:8598040)
(MGI:79272|PMID:8638109)
(MGI:3033881|PMID:9432982), (MGI:79111|PMID:8598041)		 MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 MGI:3033881 MGI:79110 MGI:79111 MGI:79272 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G Il12a interleukin 12a acts_upstream_of_or_within IGI (MGI:5461742|PMID:22968459) MGI PMID:22968459 MGI:5461742 NCBI chr 3:68,597,977...68,605,883
Ensembl chr 3:68,597,977...68,605,880 		JBrowse link
G Il1rl2 interleukin 1 receptor-like 2 acts_upstream_of_or_within IMP (MGI:5461742|PMID:22968459) MGI PMID:22968459 MGI:5461742 NCBI chr 1:40,363,697...40,406,722
Ensembl chr 1:40,363,770...40,406,722 		JBrowse link
G Il2 interleukin 2 involved_in ISO RGD
MGI		 PMID:9352365 GO_REF:0000096 MGI:4417868 RGD:1600138 NCBI chr 3:37,174,862...37,180,103
Ensembl chr 3:37,174,672...37,180,108 		JBrowse link
G Il2ra interleukin 2 receptor, alpha chain involved_in ISO RGD
MGI		 PMID:9352365 GO_REF:0000096 MGI:4417868 RGD:1600138 NCBI chr 2:11,647,603...11,698,005
Ensembl chr 2:11,647,618...11,698,004 		JBrowse link
G Il36b interleukin 36B acts_upstream_of_or_within
involved_in		 IGI
IBA		 (MGI:5461742|PMID:22968459)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:22968459 MGI:5461742 MGI:6201960 NCBI chr 2:24,043,184...24,050,115
Ensembl chr 2:24,043,173...24,050,531 		JBrowse link
G Il4 interleukin 4 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr11:53,503,287...53,509,492
Ensembl chr11:53,493,809...53,509,496 		JBrowse link
G Il7 interleukin 7 acts_upstream_of_or_within IDA (MGI:3029504|PMID:12431371) MGI PMID:12431371 MGI:3029504 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820 		JBrowse link
G Mdk midkine involved_in IMP (MGI:5897914|PMID:28183532) UniProt PMID:28183532 MGI:5897914 NCBI chr 2:91,760,150...91,762,642
Ensembl chr 2:91,760,150...91,762,642 		JBrowse link
G Pbrm1 polybromo 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr14:30,741,095...30,843,549
Ensembl chr14:30,741,095...30,843,549 		JBrowse link
G Phf10 PHD finger protein 10 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr17:15,165,256...15,181,522
Ensembl chr17:15,165,271...15,181,535 		JBrowse link
G Pik3r6 phosphoinositide-3-kinase regulatory subunit 5 involved_in IMP (MGI:3641361|PMID:12707323) CACAO PMID:12707323 MGI:3641361 NCBI chr11:68,393,845...68,443,524
Ensembl chr11:68,393,845...68,443,524 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of_or_within IMP (MGI:80946|PMID:8666928) MGI PMID:8666928 MGI:80946 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Rag1 recombination activating 1 involved_in IMP (MGI:50458|PMID:1547488) CACAO PMID:1547488 MGI:50458 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rhoh ras homolog family member H involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:66,018,092...66,054,043
Ensembl chr 5:66,018,556...66,054,043 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA (MGI:4940419|PMID:21300860) MGI PMID:21300860 MGI:4940419 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr19:26,580,804...26,755,721
Ensembl chr19:26,582,450...26,755,722 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr10:75,732,603...75,757,448
Ensembl chr10:75,732,603...75,757,451 		JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 9:109,961,092...110,069,246
Ensembl chr 9:109,946,776...110,069,246 		JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr10:128,294,823...128,326,460
Ensembl chr10:128,295,117...128,326,351 		JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr15:99,600,168...99,611,876
Ensembl chr15:99,600,010...99,611,872 		JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr11:106,153,997...106,163,810
Ensembl chr11:106,154,005...106,163,798 		JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr 5:24,797,620...24,829,649
Ensembl chr 5:24,795,816...24,829,409 		JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 involved_in NAS (MGI:3774198|PMID:12110891) ComplexPortal PMID:12110891 MGI:3774198 NCBI chr11:99,099,873...99,121,843
Ensembl chr11:99,099,873...99,121,843 		JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of_or_within IDA (MGI:4358631|PMID:19723499) MGI PMID:19723499 MGI:4358631 NCBI chr15:98,668,593...98,676,093
Ensembl chr15:98,668,593...98,676,031 		JBrowse link
G Xbp1 X-box binding protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:5,470,641...5,475,993
Ensembl chr11:5,470,659...5,475,893 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within ISO
IMP		 (MGI:893249|PMID:9208839) MGI PMID:9208839 GO_REF:0000008 MGI:2154458 MGI:893249 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in IMP (MGI:5300225|PMID:22201126) UniProt PMID:22201126 MGI:5300225 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 involved_in IMP (MGI:5790022|PMID:26522984) UniProt PMID:26522984 MGI:5790022 NCBI chr14:25,458,299...25,667,167
Ensembl chr14:25,459,609...25,667,167 		JBrowse link
positive regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:3620422|PMID:12163459), (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)
(MGI:3640996|PMID:11435465)
(MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)		 MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 MGI:3620422 MGI:3640996 MGI:3690682 MGI:3774231 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adam8 a disintegrin and metallopeptidase domain 8 involved_in IDA (MGI:4836302|PMID:20856819) BHF-UCL PMID:20856819 MGI:4836302 NCBI chr 7:139,558,845...139,573,016
Ensembl chr 7:139,558,845...139,572,475 		JBrowse link
G Egr3 early growth response 3 acts_upstream_of_or_within IMP (MGI:5139961|PMID:21737317) MGI PMID:21737317 MGI:5139961 NCBI chr14:70,314,766...70,320,062
Ensembl chr14:70,314,652...70,320,063 		JBrowse link
G Ihh Indian hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 1:74,984,474...74,990,831
Ensembl chr 1:74,984,474...74,990,831 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of_or_within IMP (MGI:1095961|PMID:9252128)
(MGI:1327709|PMID:9916699)		 MGI PMID:9252128 PMID:9916699 MGI:1095961 MGI:1327709 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within IMP (MGI:893320|PMID:9215626) MGI PMID:9215626 MGI:893320 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 involved_in IMP (MGI:1891792|PMID:11017103) CACAO PMID:11017103 MGI:1891792 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3836494|PMID:19109233) BHF-UCL PMID:19109233 MGI:3836494 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IMP (MGI:5139961|PMID:21737317) MGI PMID:21737317 MGI:5139961 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 involved_in IMP (MGI:5432321|PMID:22561606) UniProt PMID:22561606 MGI:5432321 NCBI chr10:130,158,696...130,199,338
Ensembl chr10:130,158,739...130,199,980 		JBrowse link
G Vnn1 vanin 1 involved_in IDA (MGI:84472|PMID:8934567) BHF-UCL PMID:8934567 MGI:84472 NCBI chr10:23,770,586...23,781,242
Ensembl chr10:23,770,586...23,781,241 		JBrowse link
G Zfp609 zinc finger protein 609 involved_in TAS (MGI:5908329|PMID:23076336) UniProt PMID:23076336 MGI:5908329 NCBI chr 9:65,598,860...65,735,004
Ensembl chr 9:65,599,673...65,734,846 		JBrowse link
positive regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa1 annexin A1 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr19:20,350,798...20,368,035
Ensembl chr19:20,350,792...20,368,308 		JBrowse link
G Ccl19 chemokine (C-C motif) ligand 19 involved_in IDA (MGI:3576832|PMID:15845453) BHF-UCL PMID:15845453 MGI:3576832 NCBI chr 4:42,754,525...42,756,365
Ensembl chr 4:42,754,525...42,756,577 		JBrowse link
G Ccr2 chemokine (C-C motif) receptor 2 involved_in IC (MGI:3699670|PMID:14662900) BHF-UCL PMID:14662900 MGI:3699670 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594 		JBrowse link
G Ccr7 chemokine (C-C motif) receptor 7 involved_in IC (MGI:3576832|PMID:15845453) BHF-UCL PMID:15845453 MGI:3576832 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IMP
IGI		 (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Irf1 interferon regulatory factor 1 involved_in TAS (MGI:5319622|PMID:11244049) UniProt PMID:11244049 MGI:5319622 NCBI chr11:53,660,841...53,669,200
Ensembl chr11:53,660,841...53,669,200 		JBrowse link
G Ripk2 receptor (TNFRSF)-interacting serine-threonine kinase 2 acts_upstream_of_or_within IMP (MGI:2176424|PMID:11894097) MGI PMID:11894097 MGI:2176424 NCBI chr 4:16,122,740...16,163,674
Ensembl chr 4:16,122,733...16,163,647 		JBrowse link
G Socs5 suppressor of cytokine signaling 5 involved_in IDA (MGI:3687909|PMID:12242343) UniProt PMID:12242343 MGI:3687909 NCBI chr17:87,414,707...87,445,153
Ensembl chr17:87,415,107...87,445,267 		JBrowse link
positive regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malt1 MALT1 paracaspase involved_in IDA (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr18:65,564,010...65,611,959
Ensembl chr18:65,564,009...65,612,138 		JBrowse link
G Mir326 microRNA 326 acts_upstream_of_or_within IDA
IMP		 (MGI:4436838|PMID:19838199) MGI PMID:19838199 MGI:4436838 NCBI chr 7:99,201,476...99,201,570
Ensembl chr 7:99,201,476...99,201,570 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Nfkbiz nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta involved_in IMP (MGI:6142401|PMID:25282160) UniProt PMID:25282160 MGI:6142401 NCBI chr16:55,631,740...55,659,004
Ensembl chr16:55,631,738...55,659,262 		JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in IMP (MGI:5689221|PMID:26098997) UniProt PMID:26098997 MGI:5689221 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782 		JBrowse link
positive regulation of T-helper 17 cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il23a interleukin 23, alpha subunit p19 involved_in IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:3851279|PMID:19501566)		 GO_Central
BHF-UCL		 PMID:19501566 PMID:21873635 MGI:3851279 MGI:6201960 NCBI chr10:128,132,009...128,133,953
Ensembl chr10:128,132,008...128,134,621 		JBrowse link
positive regulation of T-helper 2 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il18 interleukin 18 involved_in IMP (MGI:3608083|PMID:12829194) BHF-UCL PMID:12829194 MGI:3608083 NCBI chr 9:50,466,000...50,493,141
Ensembl chr 9:50,466,127...50,493,140 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of_or_within IGI (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Il6 interleukin 6 acts_upstream_of_or_within IDA (MGI:2450484|PMID:12594267) MGI PMID:12594267 MGI:2450484 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Nlrp3 NLR family, pyrin domain containing 3 involved_in IMP (MGI:5689221|PMID:26098997) UniProt PMID:26098997 MGI:5689221 NCBI chr11:59,432,395...59,457,781
Ensembl chr11:59,432,394...59,457,782 		JBrowse link
G Prkcz protein kinase C, zeta involved_in IMP (MGI:3584076|PMID:15987782) UniProt PMID:15987782 MGI:3584076 NCBI chr 4:155,344,575...155,445,885
Ensembl chr 4:155,344,586...155,445,818 		JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768 		JBrowse link
G Tnfsf4 tumor necrosis factor (ligand) superfamily, member 4 involved_in IDA (MGI:4943387|PMID:18354165) BHF-UCL PMID:18354165 MGI:4943387 NCBI chr 1:161,223,009...161,245,777
Ensembl chr 1:161,222,980...161,245,981 		JBrowse link
positive regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myb myeloblastosis oncogene involved_in ISO (PMID:20484083) UniProt PMID:20484083 NCBI chr10:21,000,829...21,036,883
Ensembl chr10:21,000,834...21,036,883 		JBrowse link
G Shb src homology 2 domain-containing transforming protein B acts_upstream_of_or_within IMP (MGI:5617929|PMID:24645804) MGI PMID:24645804 MGI:5617929 NCBI chr 4:45,423,276...45,530,828
Ensembl chr 4:45,423,278...45,532,470 		JBrowse link
positive T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (MGI:3767367|PMID:17998389) MGI PMID:17998389 MGI:3767367 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:5473721|PMID:23334952) MGI PMID:23334952 MGI:5473721 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Themis thymocyte selection associated involved_in IMP (MGI:4352756|PMID:19597499), (MGI:4352757|PMID:19597498), (MGI:4352758|PMID:19597497), (MGI:4361774|PMID:19805304) UniProt PMID:19597497 PMID:19597498 PMID:19597499 PMID:19805304 MGI:4352756 MGI:4352757 MGI:4352758 MGI:4361774 NCBI chr10:28,544,356...28,759,816
Ensembl chr10:28,544,356...28,759,814 		JBrowse link
positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 antigen acts_upstream_of_or_within IMP (MGI:87097|PMID:9133426) MGI PMID:9133426 MGI:87097 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Cd3d CD3 antigen, delta polypeptide involved_in IBA
IMP		 (MGI:6201960|PMID:21873635)
(MGI:87267|PMID:9135151)		 GO_Central
UniProt		 PMID:9135151 PMID:21873635 MGI:6201960 MGI:87267 NCBI chr 9:44,893,067...44,898,350
Ensembl chr 9:44,893,084...44,898,637 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cd3g CD3 antigen, gamma polypeptide involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:44,880,870...44,891,729
Ensembl chr 9:44,880,870...44,891,729 		JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) acts_upstream_of_or_within IMP (MGI:3033881|PMID:9432982)
(MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040)		 MGI PMID:7679955 PMID:8598040 PMID:9432982 MGI:3033881 MGI:52620 MGI:79110 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724 		JBrowse link
G Dock2 dedicator of cyto-kinesis 2 acts_upstream_of_or_within IMP (MGI:2668308|PMID:12871644) MGI PMID:12871644 MGI:2668308 NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719 		JBrowse link
G H2-DMa histocompatibility 2, class II, locus DMa acts_upstream_of_or_within IMP (MGI:79272|PMID:8638109)
(MGI:3033881|PMID:9432982), (MGI:79111|PMID:8598041)
(MGI:79110|PMID:8598040)		 MGI PMID:8598040 PMID:8598041 PMID:8638109 PMID:9432982 MGI:3033881 MGI:79110 MGI:79111 MGI:79272 NCBI chr17:34,338,667...34,358,075
Ensembl chr17:34,338,515...34,358,075 		JBrowse link
G Itpkb inositol 1,4,5-trisphosphate 3-kinase B acts_upstream_of_or_within IMP (MGI:3039326|PMID:15064401) MGI PMID:15064401 MGI:3039326 NCBI chr 1:180,156,655...180,252,367
Ensembl chr 1:180,158,050...180,252,367 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C acts_upstream_of_or_within IMP (MGI:80946|PMID:8666928) MGI PMID:8666928 MGI:80946 NCBI chr 1:137,990,597...138,103,491
Ensembl chr 1:137,990,599...138,103,446 		JBrowse link
G Shh sonic hedgehog involved_in IMP (MGI:3834308|PMID:17227833) BHF-UCL PMID:17227833 MGI:3834308 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Skint1 selection and upkeep of intraepithelial T cells 1 acts_upstream_of_or_within IDA
IMP		 (MGI:4940419|PMID:21300860)
(MGI:3809697|PMID:18408721)		 MGI PMID:18408721 PMID:21300860 MGI:3809697 MGI:4940419 NCBI chr 4:111,863,466...111,886,735
Ensembl chr 4:111,863,466...111,886,735 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within IMP (MGI:4940955|PMID:21098124) MGI PMID:21098124 MGI:4940955 NCBI chr17:46,857,764...46,869,194
Ensembl chr17:46,859,255...46,867,101 		JBrowse link
G Stk11 serine/threonine kinase 11 acts_upstream_of_or_within IMP (MGI:5003385|PMID:21487392) MGI PMID:21487392 MGI:5003385 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516 		JBrowse link
G Zap70 zeta-chain (TCR) associated protein kinase acts_upstream_of_or_within ISO
IMP		 (MGI:75253|PMID:7630421) MGI PMID:7630421 GO_REF:0000008 MGI:2154458 MGI:75253 NCBI chr 1:36,800,879...36,821,902
Ensembl chr 1:36,800,879...36,821,899 		JBrowse link
pro-T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Flt3 FMS-like tyrosine kinase 3 acts_upstream_of_or_within IMP (MGI:74655|PMID:7621074) MGI PMID:7621074 MGI:74655 NCBI chr 5:147,267,551...147,337,299
Ensembl chr 5:147,267,551...147,337,299 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (MGI:4415096|PMID:19934022) MGI PMID:19934022 MGI:4415096 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Spi1 spleen focus forming virus (SFFV) proviral integration oncogene involved_in IMP (MGI:6508514|PMID:30171019) ARUK-UCL PMID:30171019 MGI:6508514 NCBI chr 2:90,912,750...90,946,104
Ensembl chr 2:90,912,735...90,946,101 		JBrowse link
regulation of alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in IMP (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chr 8:71,858,630...71,868,475
Ensembl chr 8:71,858,654...71,862,548 		JBrowse link
regulation of CD4-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sh3rf1 SH3 domain containing ring finger 1 involved_in IMP (MGI:6158776|PMID:27084103) UniProt PMID:27084103 MGI:6158776 NCBI chr 8:61,677,117...61,918,327
Ensembl chr 8:61,676,906...61,849,105 		JBrowse link
regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 involved_in TAS (MGI:3795336|PMID:18368049) UniProt PMID:18368049 MGI:3795336 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
regulation of CD8-positive, alpha-beta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (MGI:3817343|PMID:18776904) MGI PMID:18776904 MGI:3817343 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
regulation of extrathymic T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR domain containing 1, with ZNF domain involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Zfp683 zinc finger protein 683 involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
regulation of gamma-delta T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr3 early growth response 3 acts_upstream_of_or_within IDA (MGI:5139961|PMID:21737317) MGI PMID:21737317 MGI:5139961 NCBI chr14:70,314,766...70,320,062
Ensembl chr14:70,314,652...70,320,063 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IDA (MGI:5139961|PMID:21737317) MGI PMID:21737317 MGI:5139961 NCBI chr 3:94,280,101...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Sox13 SRY (sex determining region Y)-box 13 acts_upstream_of_or_within IDA (MGI:5139961|PMID:21737317) MGI PMID:21737317 MGI:5139961 NCBI chr 1:133,310,038...133,352,198
Ensembl chr 1:133,310,041...133,352,115 		JBrowse link
G Tcf7 transcription factor 7, T cell specific involved_in IMP (MGI:5486619|PMID:23562159) UniProt PMID:23562159 MGI:5486619 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
regulation of immature T cell proliferation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd1d1 CD1d1 antigen involved_in IMP (MGI:3759394|PMID:11550008) CACAO PMID:11550008 MGI:3759394 NCBI chr 3:86,903,141...86,919,665
Ensembl chr 3:86,903,141...86,906,748 		JBrowse link
G Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 acts_upstream_of_or_within IDA (MGI:63416|PMID:8405064) MGI PMID:8405064 MGI:63416 NCBI chr 4:151,004,612...151,030,561
Ensembl chr 4:150,999,019...151,030,559 		JBrowse link
G Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 acts_upstream_of_or_within IDA (MGI:63416|PMID:8405064) MGI PMID:8405064 MGI:63416 NCBI chr17:57,412,113...57,414,757
Ensembl chr17:57,412,325...57,414,757 		JBrowse link
regulation of memory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl6 B cell leukemia/lymphoma 6 acts_upstream_of_or_within IMP (MGI:3051162|PMID:15240675) MGI PMID:15240675 MGI:3051162 NCBI chr16:23,783,800...23,807,623
Ensembl chr16:23,783,802...23,807,602 		JBrowse link
regulation of NK T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prdm1 PR domain containing 1, with ZNF domain involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497 		JBrowse link
G Zfp683 zinc finger protein 683 involved_in IMP (MGI:5779429|PMID:27102484) UniProt PMID:27102484 MGI:5779429 NCBI chr 4:133,778,506...133,786,252
Ensembl chr 4:133,781,149...133,786,307 		JBrowse link
regulation of positive thymic T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn1 forkhead box N1 involved_in IMP (MGI:5554515|PMID:24184560) UniProt PMID:24184560 MGI:5554515 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Tox thymocyte selection-associated high mobility group box involved_in IMP (MGI:3773459|PMID:18195075) UniProt PMID:18195075 MGI:3773459 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557 		JBrowse link
regulation of regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 antigen acts_upstream_of_or_within IGI (MGI:4946593|PMID:21245484) MGI PMID:21245484 MGI:4946593 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Ctla2a cytotoxic T lymphocyte-associated protein 2 alpha acts_upstream_of_or_within IMP (MGI:4950326|PMID:21245393) MGI PMID:21245393 MGI:4950326 NCBI chr13:61,081,969...61,084,439
Ensembl chr13:61,081,969...61,084,439 		JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (MGI:3805722|PMID:18725527) MGI PMID:18725527 MGI:3805722 NCBI chr12:104,653,999...104,718,227
Ensembl chr12:104,654,001...104,718,211 		JBrowse link
G Drosha drosha, ribonuclease type III acts_upstream_of_or_within IMP (MGI:3805722|PMID:18725527) MGI PMID:18725527 MGI:3805722 NCBI chr15:12,824,893...12,935,377
Ensembl chr15:12,824,901...12,935,377 		JBrowse link
G Fanca Fanconi anemia, complementation group A acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5569680|PMID:24501220)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:24501220 MGI:5569680 MGI:6201960 NCBI chr 8:123,993,033...124,045,390
Ensembl chr 8:123,995,039...124,045,315 		JBrowse link
G Fancd2 Fanconi anemia, complementation group D2 acts_upstream_of_or_within IMP (MGI:5569680|PMID:24501220) MGI PMID:24501220 MGI:5569680 NCBI chr 6:113,508,622...113,573,981
Ensembl chr 6:113,508,643...113,573,978 		JBrowse link
G Kat2a K(lysine) acetyltransferase 2A involved_in IMP (MGI:5926326|PMID:28424240) UniProt PMID:28424240 MGI:5926326 NCBI chr11:100,595,572...100,604,427
Ensembl chr11:100,595,572...100,603,291 		JBrowse link
G Lck lymphocyte protein tyrosine kinase acts_upstream_of_or_within IGI (MGI:4946593|PMID:21245484) MGI PMID:21245484 MGI:4946593 NCBI chr 4:129,442,137...129,467,434
Ensembl chr 4:129,442,137...129,467,434 		JBrowse link
G Sh2b3 SH2B adaptor protein 3 involved_in ISO RGD
MGI		 PMID:25776069 GO_REF:0000096 MGI:4417868 RGD:13442483 NCBI chr 5:121,953,544...121,975,706
Ensembl chr 5:121,953,551...121,975,709 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IGI (MGI:4946593|PMID:21245484) MGI PMID:21245484 MGI:4946593 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
regulation of T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase involved_in IMP (MGI:5142352|PMID:21690296) UniProt PMID:21690296 MGI:5142352 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:3773982|PMID:18228248) MGI PMID:18228248 MGI:3773982 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Card11 caspase recruitment domain family, member 11 acts_upstream_of_or_within IMP (MGI:3039643|PMID:12867038) MGI PMID:12867038 MGI:3039643 NCBI chr 5:140,858,754...140,986,351
Ensembl chr 5:140,858,745...140,986,337 		JBrowse link
G Ccr2 chemokine (C-C motif) receptor 2 involved_in IMP (MGI:5926947|PMID:28507030) UniProt PMID:28507030 MGI:5926947 NCBI chr 9:123,901,954...123,913,594
Ensembl chr 9:123,901,987...123,913,594 		JBrowse link
G Crtam cytotoxic and regulatory T cell molecule involved_in IMP (MGI:5581366|PMID:24687959) UniProt PMID:24687959 MGI:5581366 NCBI chr 9:40,884,094...40,915,924
Ensembl chr 9:40,880,987...40,915,924 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 acts_upstream_of_or_within IMP (MGI:5547469|PMID:23991089) MGI PMID:23991089 MGI:5547469 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Duxbl1 double homeobox B-like 1 acts_upstream_of_or_within IDA (MGI:4829762|PMID:17911620) MGI PMID:17911620 MGI:4829762 NCBI chr14:25,979,011...25,990,590
Ensembl chr14:25,979,001...25,990,512 		JBrowse link
G Fas Fas (TNF receptor superfamily member 6) acts_upstream_of_or_within IMP (MGI:55958|PMID:6610701) MGI PMID:6610701 MGI:55958 NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172 		JBrowse link
G H2-Oa histocompatibility 2, O region alpha locus acts_upstream_of_or_within IMP (MGI:1913231|PMID:11069069) MGI PMID:11069069 MGI:1913231 NCBI chr17:34,311,353...34,314,286
Ensembl chr17:34,311,314...34,314,208 		JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within IMP (MGI:1354083|PMID:10704459) MGI PMID:10704459 MGI:1354083 NCBI chr 8:83,058,253...83,129,883
Ensembl chr 8:83,058,261...83,129,851 		JBrowse link
G Mettl3 methyltransferase like 3 involved_in IMP (MGI:6094929|PMID:28792938) UniProt PMID:28792938 MGI:6094929 NCBI chr14:52,532,298...52,548,555
Ensembl chr14:52,532,298...52,542,585 		JBrowse link
G Prelid1 PRELI domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:55,469,868...55,473,085
Ensembl chr13:55,468,313...55,473,085 		JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within IGI (MGI:3811961|PMID:18684012) MGI PMID:18684012 MGI:3811961 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within IGI (MGI:3811961|PMID:18684012) MGI PMID:18684012 MGI:3811961 NCBI chr 4:59,905,899...59,915,056
Ensembl chr 4:59,905,126...59,915,056 		JBrowse link
G Tbx21 T-box 21 involved_in IMP (MGI:5142352|PMID:21690296) UniProt PMID:21690296 MGI:5142352 NCBI chr11:96,988,833...97,006,157
Ensembl chr11:96,988,897...97,006,157 		JBrowse link
regulation of T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO RGD
MGI		 PMID:3876160 GO_REF:0000096 MGI:4417868 RGD:152995412 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adrm1 adhesion regulating molecule 1 26S proteasome ubiquitin receptor involved_in IMP (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chr 2:179,813,381...179,818,076
Ensembl chr 2:179,813,278...179,818,079 		JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in IMP (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chr 8:71,858,630...71,868,475
Ensembl chr 8:71,858,654...71,862,548 		JBrowse link
G Clptm1 cleft lip and palate associated transmembrane protein 1 involved_in IMP (MGI:1095293|PMID:9218588) BHF-UCL PMID:9218588 MGI:1095293 NCBI chr 7:19,365,505...19,398,955
Ensembl chr 7:19,365,496...19,398,958 		JBrowse link
G Foxn1 forkhead box N1 acts_upstream_of_or_within IMP (MGI:5296987|PMID:22072979) MGI PMID:22072979 MGI:5296987 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 NOT|involved_in IMP (MGI:5688819|PMID:25065622) UniProt PMID:25065622 MGI:5688819 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within IGI (MGI:5547878|PMID:24043312) MGI PMID:24043312 MGI:5547878 NCBI chr17:80,701,181...80,787,882
Ensembl chr17:80,701,180...80,787,882 		JBrowse link
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 acts_upstream_of_or_within IGI (MGI:5547878|PMID:24043312) MGI PMID:24043312 MGI:5547878 NCBI chr12:69,630,535...69,728,626
Ensembl chr12:69,630,536...69,728,626 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within IMP (MGI:1195626|PMID:9389660)
(MGI:87214|PMID:9126927)		 MGI PMID:9126927 PMID:9389660 MGI:1195626 MGI:87214 NCBI chr18:5,591,330...5,775,468
Ensembl chr18:5,591,860...5,775,467 		JBrowse link
regulation of T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27 interleukin 27 involved_in IBA
ISO		 (MGI:6201960|PMID:21873635) GO_Central
MGI		 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:126,188,181...126,194,197
Ensembl chr 7:126,188,182...126,194,113 		JBrowse link
regulation of T-helper 17 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl20 chemokine (C-C motif) ligand 20 NOT|involved_in IDA (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chr 1:83,094,487...83,096,888
Ensembl chr 1:83,094,487...83,096,888 		JBrowse link
G Ccr6 chemokine (C-C motif) receptor 6 NOT|involved_in IMP (MGI:3820359|PMID:19050256) UniProt PMID:19050256 MGI:3820359 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973 		JBrowse link
G Mir301 microRNA 301 acts_upstream_of_or_within IMP (MGI:5426073|PMID:22517757) MGI PMID:22517757 MGI:5426073 NCBI chr11:87,003,830...87,003,915
Ensembl chr11:87,003,830...87,003,915 		JBrowse link
regulation of T-helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP (MGI:3817343|PMID:18776904) MGI PMID:18776904 MGI:3817343 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G H2-Ea histocompatibility 2, class II antigen E alpha involved_in ISO (PMID:15322540) UniProt PMID:15322540 NCBI chr17:34,560,926...34,563,619
Ensembl chr17:34,560,926...34,563,618 		JBrowse link
G H2-Eb1 histocompatibility 2, class II antigen E beta involved_in ISO (PMID:15322540) UniProt PMID:15322540 NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648 		JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B acts_upstream_of_or_within IMP (MGI:3817343|PMID:18776904) MGI PMID:18776904 MGI:3817343 NCBI chr 3:89,284,951...89,300,980
Ensembl chr 3:89,284,951...89,302,083 		JBrowse link
regulatory T cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd28 CD28 antigen involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:60,785,547...60,812,521
Ensembl chr 1:60,755,959...60,812,518 		JBrowse link
G Foxp3 forkhead box P3 acts_upstream_of
involved_in		 IDA
ISO		 (MGI:3693968|PMID:16769892), (MGI:3697020|PMID:17028180) MGI PMID:16769892 PMID:17028180 GO_REF:0000096 MGI:3693968 MGI:3697020 MGI:4834177 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within
involved_in		 IMP
ISO
IDA		 (MGI:3718815|PMID:17481928)
(MGI:3041050|PMID:15100250)		 MGI PMID:15100250 PMID:17481928 GO_REF:0000096 MGI:3041050 MGI:3718815 MGI:4834177 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502 		JBrowse link
G Usp44 ubiquitin specific peptidase 44 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:93,655,831...93,696,792
Ensembl chr10:93,667,417...93,693,950 		JBrowse link
T cell differentiation in thymus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of IMP (MGI:3620422|PMID:12163459), (MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)
(MGI:3690682|PMID:11067867), (MGI:3774231|PMID:16670300)
(MGI:3640996|PMID:11435465)		 MGI PMID:11067867 PMID:11435465 PMID:12163459 PMID:16670300 MGI:3620422 MGI:3640996 MGI:3690682 MGI:3774231 NCBI chr 2:163,568,491...163,592,161
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adam17 a disintegrin and metallopeptidase domain 17 involved_in IMP (MGI:3828349|PMID:17371977) BHF-UCL PMID:17371977 MGI:3828349 NCBI chr12:21,373,510...21,423,633
Ensembl chr12:21,373,510...21,423,633 		JBrowse link
G Apc APC, WNT signaling pathway regulator acts_upstream_of_or_within IMP (MGI:3588595|PMID:16025118) MGI PMID:16025118 MGI:3588595 NCBI chr18:34,353,350...34,455,243
Ensembl chr18:34,353,977...34,455,605 		JBrowse link
G B2m beta-2 microglobulin acts_upstream_of_or_within IGI (MGI:3817343|PMID:18776904) MGI PMID:18776904 MGI:3817343 NCBI chr 2:121,978,168...121,983,563
Ensembl chr 2:121,978,167...121,983,564 		JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (MGI:3774202|PMID:16670294) MGI PMID:16670294 MGI:3774202 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:2156164|PMID:8170972), (MGI:85476|PMID:9028316) MGI PMID:8170972 PMID:9028316 MGI:2156164 MGI:85476 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Braf Braf transforming gene acts_upstream_of_or_within IMP (MGI:5473721|PMID:23334952) MGI PMID:23334952 MGI:5473721 NCBI chr 6:39,580,171...39,702,592
Ensembl chr 6:39,580,171...39,702,397 		JBrowse link
G Cd3e CD3 antigen, epsilon polypeptide ISO RGD PMID:11896936 RGD:2313407 NCBI chr 9:44,910,033...44,920,961
Ensembl chr 9:44,910,038...44,920,925 		JBrowse link
G Cdk6 cyclin-dependent kinase 6 acts_upstream_of_or_within IMP (MGI:5140640|PMID:21508411) MGI PMID:21508411 MGI:5140640 NCBI chr 5:3,391,004...3,581,008
Ensembl chr 5:3,391,485...3,581,008 		JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:3588595|PMID:16025118) MGI PMID:16025118 MGI:3588595 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dnaja3 DnaJ heat shock protein family (Hsp40) member A3 acts_upstream_of_or_within IMP (MGI:3580938|PMID:15879105) MGI PMID:15879105 MGI:3580938 NCBI chr16:4,501,934...4,525,559
Ensembl chr16:4,457,853...4,525,559 		JBrowse link
G Fadd Fas (TNFRSF6)-associated via death domain involved_in IMP (MGI:5291865|PMID:21876153) UniProt PMID:21876153 MGI:5291865 NCBI chr 7:144,132,060...144,136,178
Ensembl chr 7:144,131,055...144,136,200 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within IMP (MGI:1929591|PMID:11265645) MGI PMID:11265645 MGI:1929591 NCBI chr 1:64,769,717...64,776,909
Ensembl chr 1:64,769,717...64,776,910 		JBrowse link
G Fzd7 frizzled class receptor 7 acts_upstream_of_or_within IMP (MGI:1929591|PMID:11265645) MGI PMID:11265645 MGI:1929591 NCBI chr 1:59,521,306...59,526,114
Ensembl chr 1:59,521,583...59,526,114 		JBrowse link
G Fzd8 frizzled class receptor 8 acts_upstream_of_or_within IMP (MGI:1929591|PMID:11265645) MGI PMID:11265645 MGI:1929591 NCBI chr18:9,212,856...9,216,201
Ensembl chr18:9,212,163...9,218,136 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within IMP
IGI		 (MGI:84497|PMID:8945476)
(MGI:2682543|PMID:14670303)
(MGI:4415096|PMID:19934022)
(MGI:3817343|PMID:18776904)		 MGI PMID:8945476 PMID:14670303 PMID:18776904 PMID:19934022 MGI:2682543 MGI:3817343 MGI:4415096 MGI:84497 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gba glucosidase, beta, acid acts_upstream_of_or_within IMP (MGI:5429097|PMID:22665763) MGI PMID:22665763 MGI:5429097 NCBI chr 3:89,110,223...89,116,180
Ensembl chr 3:89,110,235...89,116,273 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:3695957|PMID:15855276) MGI PMID:15855276 MGI:3695957 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Il2rg interleukin 2 receptor, gamma chain acts_upstream_of IMP (MGI:1095961|PMID:9252128)
(MGI:1327709|PMID:9916699)		 MGI PMID:9252128 PMID:9916699 MGI:1095961 MGI:1327709 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of IMP (MGI:893320|PMID:9215626) MGI PMID:9215626 MGI:893320 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262 		JBrowse link
G Jmjd6 jumonji domain containing 6 acts_upstream_of_or_within IMP (MGI:3042820|PMID:14715629) MGI PMID:14715629 MGI:3042820 NCBI chr11:116,728,258...116,734,593
Ensembl chr11:116,728,258...116,734,275 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within IMP (MGI:3839521|PMID:19164599) MGI PMID:19164599 MGI:3839521 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985 		JBrowse link
G Mpzl2 myelin protein zero-like 2 acts_upstream_of_or_within IMP (MGI:4367133|PMID:19851463) MGI PMID:19851463 MGI:4367133 NCBI chr 9:44,951,595...44,965,341
Ensembl chr 9:44,951,097...44,965,313 		JBrowse link
G Mr1 major histocompatibility complex, class I-related involved_in IMP (MGI:3664456|PMID:12634786) UniProt PMID:12634786 MGI:3664456 NCBI chr 1:155,003,620...155,022,560
Ensembl chr 1:155,003,023...155,022,560 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 acts_upstream_of_or_within IMP (MGI:3717964|PMID:17640884) MGI PMID:17640884 MGI:3717964 NCBI chr15:89,239,902...89,257,053
Ensembl chr15:89,239,922...89,257,029 		JBrowse link
G Ncor1 nuclear receptor co-repressor 1 acts_upstream_of_or_within IMP (MGI:1926554|PMID:11030619) MGI PMID:11030619 MGI:1926554 NCBI chr11:62,207,132...62,348,200
Ensembl chr11:62,207,252...62,349,367 		JBrowse link
G Nfkbid nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta acts_upstream_of IDA (MGI:2177878|PMID:11931770) MGI PMID:11931770 MGI:2177878 NCBI chr 7:30,121,156...30,128,173
Ensembl chr 7:30,121,157...30,128,171 		JBrowse link
G Nkap NFKB activating protein acts_upstream_of_or_within IMP (MGI:4838711|PMID:20610818) MGI PMID:20610818 MGI:4838711 NCBI chr  X:36,390,416...36,414,399
Ensembl chr  X:36,390,448...36,414,399 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (MGI:1290043|PMID:9768755) MGI PMID:9768755 MGI:1290043 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Prr7 proline rich 7 (synaptic) involved_in IMP (MGI:5816780|PMID:27657535) MGI PMID:27657535 MGI:5816780 NCBI chr13:55,612,080...55,620,968
Ensembl chr13:55,612,080...55,620,967 		JBrowse link
G Psmb11 proteasome (prosome, macropain) subunit, beta type, 11 acts_upstream_of_or_within IMP (MGI:6392185|PMID:31915251) MGI PMID:31915251 MGI:6392185 NCBI chr14:54,862,767...54,867,013
Ensembl chr14:54,858,890...54,867,013 		JBrowse link
G Rabl3 RAB, member RAS oncogene family-like 3 involved_in IMP (MGI:6405642|PMID:32220963) UniProt PMID:32220963 MGI:6405642 NCBI chr16:37,360,220...37,392,747
Ensembl chr16:37,360,247...37,392,747 		JBrowse link
G Rag1 recombination activating 1 involved_in
acts_upstream_of_or_within		 IMP (MGI:50458|PMID:1547488)
(MGI:893318|PMID:9215624)		 UniProt
MGI		 PMID:1547488 PMID:9215624 MGI:50458 MGI:893318 NCBI chr 2:101,468,597...101,479,877
Ensembl chr 2:101,468,627...101,479,846 		JBrowse link
G Rag2 recombination activating gene 2 involved_in IMP (MGI:50458|PMID:1547488) UniProt PMID:1547488 MGI:50458 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in IGI (MGI:5291865|PMID:21876153) UniProt PMID:21876153 MGI:5291865 NCBI chr14:56,022,452...56,026,314
Ensembl chr14:56,022,452...56,026,322 		JBrowse link
G Rorc RAR-related orphan receptor gamma acts_upstream_of_or_within IMP (MGI:3047471|PMID:15247480) MGI PMID:15247480 MGI:3047471 NCBI chr 3:94,280,101...94,305,583
Ensembl chr 3:94,280,101...94,305,583 		JBrowse link
G Rps6 ribosomal protein S6 acts_upstream_of_or_within IMP
IGI		 (MGI:3610868|PMID:16357222) MGI PMID:16357222 MGI:3610868 NCBI chr 4:86,772,336...86,775,604
Ensembl chr 4:86,772,897...86,775,649 		JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of		 IMP (MGI:3847177|PMID:19273836)
(MGI:1888832|PMID:10981962)		 BHF-UCL
MGI		 PMID:10981962 PMID:19273836 MGI:1888832 MGI:3847177 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,750,177...100,775,995
Ensembl chr11:100,750,177...100,775,995 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within IGI (MGI:3054293|PMID:15294943) MGI PMID:15294943 MGI:3054293 NCBI chr11:100,671,557...100,741,407
Ensembl chr11:100,671,557...100,741,550 		JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within IMP (MGI:3829828|PMID:18958875) MGI PMID:18958875 MGI:3829828 NCBI chr10:80,245,375...80,269,814
Ensembl chr10:80,245,348...80,269,481 		JBrowse link
G Tespa1 thymocyte expressed, positive selection associated 1 acts_upstream_of IMP
IDA		 (MGI:5920164|PMID:28598420) MGI PMID:28598420 MGI:5920164 NCBI chr10:130,158,696...130,199,338
Ensembl chr10:130,158,739...130,199,980 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IGI (MGI:3610868|PMID:16357222) MGI PMID:16357222 MGI:3610868 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 acts_upstream_of_or_within IDA (MGI:1929591|PMID:11265645) MGI PMID:11265645 MGI:1929591 NCBI chr15:98,687,738...98,691,711
Ensembl chr15:98,687,738...98,691,718 		JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 acts_upstream_of_or_within IDA (MGI:1929591|PMID:11265645) MGI PMID:11265645 MGI:1929591 NCBI chr 4:137,004,946...137,026,812
Ensembl chr 4:137,004,800...137,027,037 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 acts_upstream_of_or_within IMP (MGI:5300225|PMID:22201126) MGI PMID:22201126 MGI:5300225 NCBI chr12:76,416,825...76,443,729
Ensembl chr12:76,417,040...76,443,724 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IGI
IMP		 (MGI:4818820|PMID:20622884) BHF-UCL
UniProt		 PMID:20622884 MGI:4818820 NCBI chr12:80,154,534...80,159,787
Ensembl chr12:80,154,528...80,159,787 		JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in IGI
IMP		 (MGI:4818820|PMID:20622884) BHF-UCL
UniProt		 PMID:20622884 MGI:4818820 NCBI chr17:84,491,352...84,495,375
Ensembl chr17:84,491,359...84,495,375 		JBrowse link
T cell differentiation involved in immune response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4d C-type lectin domain family 4, member d acts_upstream_of_or_within IMP (MGI:5525050|PMID:23602766) MGI PMID:23602766 MGI:5525050 NCBI chr 6:123,239,066...123,252,227
Ensembl chr 6:123,239,070...123,252,224 		JBrowse link
G Clec4e C-type lectin domain family 4, member e acts_upstream_of_or_within IMP (MGI:5525050|PMID:23602766) MGI PMID:23602766 MGI:5525050 NCBI chr 6:123,258,748...123,266,830
Ensembl chr 6:123,258,748...123,266,829 		JBrowse link
G Fcer1g Fc receptor, IgE, high affinity I, gamma polypeptide acts_upstream_of_or_within
involved_in		 IMP
IBA		 (MGI:5525050|PMID:23602766)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:23602766 MGI:5525050 MGI:6201960 NCBI chr 1:171,057,141...171,061,918
Ensembl chr 1:171,057,141...171,061,934 		JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A involved_in IMP (MGI:3574161|PMID:15780988) UniProt PMID:15780988 MGI:3574161 NCBI chr 3:88,343,266...88,368,500
Ensembl chr 3:88,343,266...88,368,489 		JBrowse link
T cell lineage commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:78866|PMID:8788039) MGI PMID:8788039 MGI:78866 NCBI chr 1:106,465,906...106,642,020
Ensembl chr 1:106,465,908...106,642,004 		JBrowse link
G Foxn1 forkhead box N1 involved_in IMP (MGI:5554515|PMID:24184560) UniProt PMID:24184560 MGI:5554515 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384 		JBrowse link
G Il7 interleukin 7 acts_upstream_of_or_within IMP (MGI:894974|PMID:9252127) MGI PMID:9252127 MGI:894974 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (MGI:78866|PMID:8788039) MGI PMID:8788039 MGI:78866 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Rag2 recombination activating gene 2 acts_upstream_of_or_within IMP (MGI:78866|PMID:8788039) MGI PMID:8788039 MGI:78866 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874 		JBrowse link
G Trp53 transformation related protein 53 acts_upstream_of_or_within IMP (MGI:78866|PMID:8788039) MGI PMID:8788039 MGI:78866 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699 		JBrowse link
T cell receptor V(D)J recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b B cell leukemia/lymphoma 11B acts_upstream_of_or_within IMP (MGI:2662810|PMID:12717433) MGI PMID:12717433 MGI:2662810 NCBI chr12:107,876,662...107,970,404
Ensembl chr12:107,876,662...107,969,861 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within IGI (MGI:3640275|PMID:9462507) MGI PMID:9462507 MGI:3640275 NCBI chr 3:130,903,946...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Lig4 ligase IV, DNA, ATP-dependent acts_upstream_of_or_within IMP (MGI:1860400|PMID:10911993) MGI PMID:10911993 MGI:1860400 NCBI chr 8:10,020,020...10,027,680
Ensembl chr 8:10,019,049...10,027,686 		JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide acts_upstream_of_or_within IMP (MGI:1290043|PMID:9768755) MGI PMID:9768755 MGI:1290043 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099 		JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (MGI:3640275|PMID:9462507) MGI PMID:9462507 MGI:3640275 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
T cell selection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd4 CD4 antigen involved_in ISS
ISO		 (MGI:1194481|PMID:9551897) UniProt
MGI		 PMID:9551897 GO_REF:0000096 MGI:1194481 MGI:4834177 NCBI chr 6:124,841,656...124,865,210
Ensembl chr 6:124,841,655...124,865,184 		JBrowse link
T follicular helper cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp1 forkhead box P1 involved_in IDA (MGI:5607369|PMID:24859450) UniProt PMID:24859450 MGI:5607369 NCBI chr 6:98,902,303...99,510,587
Ensembl chr 6:98,902,299...99,499,682 		JBrowse link
G Gpr183 G protein-coupled receptor 183 involved_in IMP (MGI:5787848|PMID:27147029) UniProt PMID:27147029 MGI:5787848 NCBI chr14:122,189,743...122,202,605
Ensembl chr14:122,189,963...122,202,607 		JBrowse link
G Il21 interleukin 21 involved_in IMP (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chr 3:37,276,908...37,286,785
Ensembl chr 3:37,276,908...37,286,785 		JBrowse link
G Il6 interleukin 6 involved_in IMP (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Rc3h1 RING CCCH (C3H) domains 1 acts_upstream_of_or_within IGI (MGI:5486592|PMID:23583643) MGI PMID:23583643 MGI:5486592 NCBI chr 1:160,733,981...160,802,546
Ensembl chr 1:160,733,988...160,802,548 		JBrowse link
G Rc3h2 ring finger and CCCH-type zinc finger domains 2 acts_upstream_of_or_within IGI (MGI:5486592|PMID:23583643) MGI PMID:23583643 MGI:5486592 NCBI chr 2:37,260,078...37,313,007
Ensembl chr 2:37,260,081...37,312,915 		JBrowse link
T-helper 1 cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cracr2a calcium release activated channel regulator 2A involved_in IMP
ISO		 (MGI:6195365|PMID:29987160) UniProt
MGI		 PMID:29987160 GO_REF:0000096 MGI:4834177 MGI:6195365 NCBI chr 6:127,538,299...127,651,197
Ensembl chr 6:127,538,301...127,651,211 		JBrowse link
G Gadd45g growth arrest and DNA-damage-inducible 45 gamma acts_upstream_of_or_within TAS (MGI:2387532|PMID:12213961) MGI PMID:12213961 MGI:2387532 NCBI chr13:52,000,711...52,002,511
Ensembl chr13:52,000,714...52,002,504 		JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of IMP
IGI		 (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 1:184,459,340...184,464,690
Ensembl chr 1:184,459,337...184,464,816 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:148,983,512...148,989,867
Ensembl chr 5:148,983,512...149,121,299 		JBrowse link
G Il18r1 interleukin 18 receptor 1 acts_upstream_of_or_within IMP (MGI:2136797|PMID:10227969) MGI PMID:10227969 MGI:2136797 NCBI chr 1:40,504,712...40,540,014
Ensembl chr 1:40,504,712...40,540,014 		JBrowse link
G Il4ra interleukin 4 receptor, alpha acts_upstream_of IGI (MGI:3761239|PMID:16424184) MGI PMID:16424184 MGI:3761239 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IDA (MGI:4834989|PMID:18579517) UniProt PMID:18579517 MGI:4834989 NCBI chr 3:130,903,946...131,018,006
Ensembl chr 3:130,904,120...131,018,005