Prkcz (protein kinase C, zeta) - Rat Genome Database

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Gene: Prkcz (protein kinase C, zeta) Mus musculus
Analyze
Symbol: Prkcz
Name: protein kinase C, zeta
RGD ID: 736362
MGI Page MGI
Description: Enables protein serine/threonine kinase activity. Involved in positive regulation of T-helper 2 cell differentiation and positive regulation of cytokine production. Acts upstream of or within several processes, including neuron projection extension; protein localization to plasma membrane; and protein phosphorylation. Located in several cellular components, including axon hillock; myelin sheath abaxonal region; and nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human PRKCZ (protein kinase C zeta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI098070; aPKCz; aPKCzeta; atypical protein kinase C; C80388; nPKC-zeta; Pkc; Pkcz; protein kinase C zeta subspecies; protein kinase C zeta type; R74924; zetaP; zetaPKC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Prkcz2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,344,575 - 155,445,885 (-)NCBIGRCm39mm39
GRCm39 Ensembl4155,344,586 - 155,445,818 (-)Ensembl
GRCm384155,260,118 - 155,361,428 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,260,129 - 155,361,361 (-)EnsemblGRCm38mm10GRCm38
MGSCv374154,634,229 - 154,735,500 (-)NCBIGRCm37mm9NCBIm37
MGSCv364154,103,920 - 154,205,191 (-)NCBImm8
Celera4157,534,125 - 157,635,425 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(S)-nicotine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2-methoxyethanol  (ISO)
2-methylcholine  (ISO)
2-nitrotoluene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
AICA ribonucleotide  (ISO)
aldehydo-D-glucose  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bromochloroacetic acid  (ISO)
butan-1-ol  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
capsaicin  (EXP)
carbachol  (ISO)
carbon nanotube  (EXP)
CGS-21680  (ISO)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
clozapine  (ISO)
cocaine  (EXP)
crocidolite asbestos  (EXP)
cycloheximide  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
D-glucose  (ISO)
dapagliflozin  (ISO)
daunorubicin  (ISO)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenzo[a,l]pyrene  (ISO)
dimethylarsinic acid  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
formaldehyde  (EXP)
fructose  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glucose  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (EXP)
lipopolysaccharide  (ISO)
LY294002  (ISO)
maneb  (EXP)
methapyrilene  (ISO)
methoxyacetic acid  (ISO)
methylazoxymethanol  (EXP)
mitomycin C  (ISO)
myriocin  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
Nor-9-carboxy-delta9-THC  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
permethrin  (ISO)
phenethyl isothiocyanate  (ISO)
phenylephrine  (ISO)
phorbol 12,13-dibutanoate  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
phosphatidic acid  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (EXP)
protein kinase inhibitor  (EXP,ISO)
quercetin  (EXP)
raloxifene  (ISO)
riddelliine  (ISO)
Se-methyl-L-selenocysteine  (EXP)
Se-methylselenocysteine  (EXP)
selenomethionine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
toluene  (ISO)
trichostatin A  (ISO)
troglitazone  (EXP)
valproic acid  (EXP,ISO)
vanadium atom  (EXP)
vanadium(0)  (EXP)
vancomycin  (EXP)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of phospholipase D activity  (ISO)
activation of protein kinase B activity  (ISO)
cell migration  (ISO)
cell surface receptor signaling pathway  (ISO)
cellular response to insulin stimulus  (ISO)
establishment of cell polarity  (ISO)
inflammatory response  (IEA)
intracellular signal transduction  (IBA,ISO)
long-term memory  (ISO)
long-term synaptic potentiation  (ISO)
membrane depolarization  (ISO)
membrane hyperpolarization  (ISO)
microtubule cytoskeleton organization  (IGI,IMP)
negative regulation of apoptotic process  (ISO)
negative regulation of hydrolase activity  (ISO)
negative regulation of insulin receptor signaling pathway  (ISO)
negative regulation of peptidyl-tyrosine phosphorylation  (ISO)
negative regulation of protein-containing complex assembly  (ISO)
neuron projection extension  (IGI)
peptidyl-serine phosphorylation  (IBA,ISO)
phosphorylation  (IEA)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell-matrix adhesion  (ISO)
positive regulation of ERK1 and ERK2 cascade  (ISO)
positive regulation of excitatory postsynaptic potential  (ISO)
positive regulation of insulin receptor signaling pathway  (ISO)
positive regulation of interleukin-10 production  (IMP)
positive regulation of interleukin-13 production  (IMP)
positive regulation of interleukin-4 production  (IMP)
positive regulation of interleukin-5 production  (IMP)
positive regulation of NF-kappaB transcription factor activity  (ISO)
positive regulation of protein transport  (ISO)
positive regulation of synaptic transmission  (ISO)
positive regulation of T-helper 2 cell cytokine production  (IMP)
positive regulation of T-helper 2 cell differentiation  (IMP)
protein kinase C signaling  (ISO)
protein localization  (ISO)
protein localization to plasma membrane  (IMP)
protein phosphorylation  (IDA,ISO)
regulation of neurotransmitter receptor localization to postsynaptic specialization membrane  (ISO)
signal transduction  (ISO)
vesicle transport along microtubule  (ISO)

References

Additional References at PubMed
PMID:1487145   PMID:2590242   PMID:7606770   PMID:7639744   PMID:7985811   PMID:8666230   PMID:8670164   PMID:8694767   PMID:8797824   PMID:8889548   PMID:8922669   PMID:8948582  
PMID:9854032   PMID:10349636   PMID:10391924   PMID:10879655   PMID:10882525   PMID:10922068   PMID:10934474   PMID:10934475   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199  
PMID:11684013   PMID:11980660   PMID:12145205   PMID:12203721   PMID:12477932   PMID:12586357   PMID:12618484   PMID:12629547   PMID:12643789   PMID:12648500   PMID:12761849   PMID:12791393  
PMID:12871585   PMID:12881425   PMID:12932816   PMID:14610273   PMID:14613966   PMID:14657501   PMID:14681479   PMID:14685273   PMID:14715240   PMID:14730360   PMID:14734537   PMID:14960283  
PMID:15102471   PMID:15526032   PMID:15630457   PMID:15665819   PMID:15707389   PMID:15723052   PMID:15766745   PMID:15775979   PMID:15882626   PMID:15893606   PMID:15901738   PMID:15950600  
PMID:15987782   PMID:16141072   PMID:16141073   PMID:16183862   PMID:16267237   PMID:16287866   PMID:16322752   PMID:16455755   PMID:16495371   PMID:16510507   PMID:16510873   PMID:16527821  
PMID:16571631   PMID:16602821   PMID:16644736   PMID:16682216   PMID:16723512   PMID:16792529   PMID:16849539   PMID:16931174   PMID:17053159   PMID:17066488   PMID:17092936   PMID:17101696  
PMID:17105725   PMID:17110421   PMID:17220321   PMID:17313651   PMID:17525161   PMID:17588663   PMID:17679097   PMID:17686945   PMID:17699685   PMID:17702581   PMID:17849438   PMID:17878344  
PMID:17879768   PMID:17971416   PMID:18003854   PMID:18067887   PMID:18083014   PMID:18162555   PMID:18202124   PMID:18353303   PMID:18354190   PMID:18367611   PMID:18403412   PMID:18448421  
PMID:18503635   PMID:18566367   PMID:18650932   PMID:18667433   PMID:18722532   PMID:18789802   PMID:18799693   PMID:18955501   PMID:19028678   PMID:19100728   PMID:19129633   PMID:19201988  
PMID:19217427   PMID:19300477   PMID:19357831   PMID:19470463   PMID:19492416   PMID:19528321   PMID:19549684   PMID:19571234   PMID:19666823   PMID:19668197   PMID:19682542   PMID:19726564  
PMID:19835853   PMID:19914171   PMID:20007975   PMID:20063415   PMID:20152182   PMID:20200162   PMID:20200223   PMID:20223754   PMID:20237282   PMID:20399730   PMID:20454458   PMID:20551175  
PMID:20570304   PMID:20620996   PMID:20643355   PMID:20815813   PMID:20826529   PMID:20844151   PMID:20962046   PMID:21127255   PMID:21131967   PMID:21190563   PMID:21193401   PMID:21248257  
PMID:21287656   PMID:21303848   PMID:21338602   PMID:21423666   PMID:21454526   PMID:21545357   PMID:21606200   PMID:21645497   PMID:21653884   PMID:21677750   PMID:21747912   PMID:21829704  
PMID:21835890   PMID:21873635   PMID:21880782   PMID:21911421   PMID:21911744   PMID:21920314   PMID:21953448   PMID:22028782   PMID:22031545   PMID:22179679   PMID:22232556   PMID:22318628  
PMID:22333836   PMID:22474074   PMID:22542185   PMID:22705452   PMID:22820510   PMID:22885183   PMID:23073791   PMID:23175628   PMID:23195221   PMID:23197712   PMID:23213435   PMID:23283171  
PMID:23283174   PMID:23313818   PMID:23334392   PMID:23374352   PMID:23392682   PMID:23466739   PMID:23510079   PMID:23550155   PMID:23675446   PMID:23684747   PMID:23690951   PMID:23749168  
PMID:23785403   PMID:23791728   PMID:23791731   PMID:23863479   PMID:23905844   PMID:23934215   PMID:24067354   PMID:24117625   PMID:24153433   PMID:24164893   PMID:24213535   PMID:24371086  
PMID:24434146   PMID:24478091   PMID:24626928   PMID:24631216   PMID:24652767   PMID:24749073   PMID:24852369   PMID:25035426   PMID:25070947   PMID:25133425   PMID:25168025   PMID:25340873  
PMID:25371366   PMID:25521757   PMID:25523391   PMID:25588837   PMID:25617472   PMID:25636444   PMID:25655195   PMID:25660024   PMID:25715394   PMID:25715395   PMID:25721514   PMID:25762570  
PMID:25916881   PMID:25936505   PMID:26035863   PMID:26212757   PMID:26231202   PMID:26387953   PMID:26416966   PMID:26490995   PMID:26496610   PMID:26514267   PMID:26635352   PMID:26689699  
PMID:26722124   PMID:26773517   PMID:26809587   PMID:26868297   PMID:26883626   PMID:26902112   PMID:26944093   PMID:26976654   PMID:27178982   PMID:27184845   PMID:27187150   PMID:27256596  
PMID:27478065   PMID:27487217   PMID:27541056   PMID:27597235   PMID:27653691   PMID:27974163   PMID:28143902   PMID:28171747   PMID:28343946   PMID:28346477   PMID:28387983   PMID:28465335  
PMID:28478097   PMID:28726782   PMID:28743803   PMID:28865485   PMID:29058721   PMID:29109255   PMID:29138296   PMID:29151265   PMID:29158444   PMID:29173896   PMID:29229865   PMID:29654745  
PMID:29694894   PMID:29712669   PMID:29923456   PMID:30016620   PMID:30044992   PMID:30111812   PMID:30126902   PMID:30157434   PMID:30305289   PMID:30485816   PMID:30526858   PMID:30552022  
PMID:30610188   PMID:30660448   PMID:30676318   PMID:30814219   PMID:31201155   PMID:31321879   PMID:31409665   PMID:31415124   PMID:31462248   PMID:31504280   PMID:31796630   PMID:31849605  
PMID:31871317   PMID:32059775   PMID:32325033   PMID:32460029   PMID:32513715   PMID:32662486   PMID:32805026   PMID:32848249   PMID:32901292   PMID:33096083   PMID:33113370   PMID:33207226  
PMID:33526661   PMID:33547760   PMID:33605987   PMID:33993983   PMID:34001891   PMID:34029538   PMID:34588579   PMID:34908109   PMID:34996942  


Genomics

Comparative Map Data
Prkcz
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,344,575 - 155,445,885 (-)NCBIGRCm39mm39
GRCm39 Ensembl4155,344,586 - 155,445,818 (-)Ensembl
GRCm384155,260,118 - 155,361,428 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,260,129 - 155,361,361 (-)EnsemblGRCm38mm10GRCm38
MGSCv374154,634,229 - 154,735,500 (-)NCBIGRCm37mm9NCBIm37
MGSCv364154,103,920 - 154,205,191 (-)NCBImm8
Celera4157,534,125 - 157,635,425 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
PRKCZ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812,048,504 - 2,185,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12,050,411 - 2,185,395 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,981,850 - 2,116,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,971,769 - 2,106,694 (+)NCBINCBI36hg18NCBI36
Build 3412,014,070 - 2,148,996NCBI
Celera1476,373 - 611,123 (-)NCBI
Cytogenetic Map1p36.33NCBI
HuRef11,259,190 - 1,392,660 (+)NCBIHuRef
CHM1_111,969,035 - 2,101,756 (+)NCBICHM1_1
T2T-CHM13v2.011,485,930 - 1,620,370 (+)NCBI
Prkcz
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25165,817,786 - 165,930,386 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5165,819,466 - 165,930,367 (-)Ensembl
Rnor_6.05172,658,071 - 172,769,492 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,658,748 - 172,769,421 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,116,787 - 176,228,206 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,061,825 - 172,172,793 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15172,072,319 - 172,179,534 (-)NCBI
Celera5164,023,257 - 164,132,959 (-)NCBICelera
Cytogenetic Map5q36NCBI
Prkcz
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,947,579 - 9,021,702 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554868,947,579 - 9,021,702 (-)NCBIChiLan1.0ChiLan1.0
PRKCZ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111,918,653 - 2,046,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,920,219 - 2,045,855 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01763,942 - 901,531 (+)NCBIMhudiblu_PPA_v0panPan3
PRKCZ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1557,012,020 - 57,113,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl557,012,070 - 57,112,664 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha557,089,028 - 57,190,338 (+)NCBI
ROS_Cfam_1.0557,215,092 - 57,316,595 (+)NCBI
ROS_Cfam_1.0 Ensembl557,214,279 - 57,316,691 (+)Ensembl
UMICH_Zoey_3.1557,206,002 - 57,307,319 (+)NCBI
UNSW_CanFamBas_1.0557,098,518 - 57,199,838 (+)NCBI
UU_Cfam_GSD_1.0557,488,367 - 57,589,745 (+)NCBI
Prkcz
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,082,811 - 28,162,827 (+)NCBI
SpeTri2.0NW_0049367371,303,502 - 1,383,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRKCZ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl664,068,575 - 64,163,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1664,073,343 - 64,159,187 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,385,685 - 58,460,767 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRKCZ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,367,309 - 129,502,681 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20129,365,679 - 129,485,818 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,720,444 - 33,872,633 (-)NCBIVero_WHO_p1.0
Prkcz
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,759,770 - 7,847,208 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248187,758,192 - 7,846,950 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,882,421 - 27,883,079UniSTSGRCm38
MGSCv37728,667,440 - 28,668,098UniSTSGRCm37
Celera722,465,230 - 22,465,888UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map4E2UniSTS
cM Map483.0UniSTS
cM Map483.0UniSTS
cM MapUN UniSTS
RH126922  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,261,731 - 155,261,930UniSTSGRCm38
MGSCv374154,635,840 - 154,636,039UniSTSGRCm37
Celera4157,535,737 - 157,535,936UniSTS
Cytogenetic Map4E2UniSTS
cM Map483.0UniSTS
Whitehead/MRC_RH42001.43UniSTS
R74924  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,261,789 - 155,261,953UniSTSGRCm38
MGSCv374154,635,898 - 154,636,062UniSTSGRCm37
Celera4157,535,795 - 157,535,959UniSTS
Cytogenetic Map4E2UniSTS
cM Map483.0UniSTS
Whitehead_YAC4 UniSTS
AI098070  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,260,239 - 155,260,502UniSTSGRCm38
MGSCv374154,634,348 - 154,634,611UniSTSGRCm37
Celera4157,534,244 - 157,534,508UniSTS
Cytogenetic Map4E2UniSTS
cM Map483.0UniSTS
Whitehead/MRC_RH42002.23UniSTS
RH125130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,261,711 - 155,261,816UniSTSGRCm38
MGSCv374154,635,820 - 154,635,925UniSTSGRCm37
Celera4157,535,717 - 157,535,822UniSTS
Cytogenetic Map4E2UniSTS
cM Map483.0UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384155,262,447 - 155,262,797UniSTSGRCm38
MGSCv374154,636,556 - 154,636,906UniSTSGRCm37
Celera4157,536,453 - 157,536,803UniSTS
Cytogenetic Map4E2UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E2UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E2UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,884,207 - 27,884,498UniSTSGRCm38
MGSCv37728,669,226 - 28,669,517UniSTSGRCm37
Celera722,467,016 - 22,467,307UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map4E2UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,882,593 - 27,883,036UniSTSGRCm38
MGSCv37728,667,612 - 28,668,055UniSTSGRCm37
Celera722,465,402 - 22,465,845UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map4E2UniSTS
Prkcz  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38727,882,430 - 27,882,651UniSTSGRCm38
GRCm384155,262,100 - 155,262,321UniSTSGRCm38
MGSCv37728,667,449 - 28,667,670UniSTSGRCm37
MGSCv374154,636,209 - 154,636,430UniSTSGRCm37
Celera4157,536,106 - 157,536,327UniSTS
Celera722,465,239 - 22,465,460UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map7A3UniSTS
cM Map483.0UniSTS
cM MapUN UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2572
Count of miRNA genes:772
Interacting mature miRNAs:1031
Transcripts:ENSMUST00000030922, ENSMUST00000103178, ENSMUST00000105624, ENSMUST00000123652, ENSMUST00000125320, ENSMUST00000131975, ENSMUST00000135699, ENSMUST00000139647, ENSMUST00000140256, ENSMUST00000145373
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB110830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV343761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY073558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY280423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ169725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK339309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M94632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030922   ⟹   ENSMUSP00000030922
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,346,178 - 155,445,818 (-)Ensembl
GRCm38.p6 Ensembl4155,261,721 - 155,361,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000103178   ⟹   ENSMUSP00000099467
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,344,586 - 155,430,229 (-)Ensembl
GRCm38.p6 Ensembl4155,260,129 - 155,345,772 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105624   ⟹   ENSMUSP00000101249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,440,591 - 155,445,797 (-)Ensembl
GRCm38.p6 Ensembl4155,356,134 - 155,361,340 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123652   ⟹   ENSMUSP00000121675
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,374,959 - 155,429,839 (-)Ensembl
GRCm38.p6 Ensembl4155,290,502 - 155,345,382 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,378,735 - 155,385,628 (-)Ensembl
GRCm38.p6 Ensembl4155,294,278 - 155,301,171 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131975   ⟹   ENSMUSP00000116042
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,374,959 - 155,429,622 (-)Ensembl
GRCm38.p6 Ensembl4155,290,502 - 155,345,165 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,355,590 - 155,357,499 (-)Ensembl
GRCm38.p6 Ensembl4155,271,133 - 155,273,042 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139647
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,374,962 - 155,429,719 (-)Ensembl
GRCm38.p6 Ensembl4155,290,505 - 155,345,262 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140256
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,346,557 - 155,352,792 (-)Ensembl
GRCm38.p6 Ensembl4155,262,100 - 155,268,335 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145373
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4155,378,810 - 155,429,197 (-)Ensembl
GRCm38.p6 Ensembl4155,294,353 - 155,344,740 (-)Ensembl
RefSeq Acc Id: NM_001039079   ⟹   NP_001034168
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,575 - 155,430,246 (-)NCBI
GRCm384155,260,118 - 155,345,789 (-)NCBI
MGSCv374154,634,229 - 154,735,500 (-)RGD
Celera4157,534,123 - 157,635,462 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355178   ⟹   NP_001342107
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,575 - 155,429,206 (-)NCBI
GRCm384155,260,118 - 155,344,749 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008860   ⟹   NP_032886
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,575 - 155,445,885 (-)NCBI
GRCm384155,260,118 - 155,361,428 (-)NCBI
MGSCv374154,634,229 - 154,735,500 (-)RGD
Celera4157,534,123 - 157,635,462 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538656   ⟹   XP_006538719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,579 - 155,429,895 (-)NCBI
GRCm384155,260,122 - 155,345,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250207   ⟹   XP_011248509
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,579 - 155,445,624 (-)NCBI
GRCm384155,260,122 - 155,361,240 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320042   ⟹   XP_017175531
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,579 - 155,386,716 (-)NCBI
GRCm384155,260,122 - 155,302,260 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253317   ⟹   XP_030109177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,579 - 155,404,566 (-)NCBI
GRCm384155,260,122 - 155,320,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163834   ⟹   XP_036019727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,579 - 155,427,387 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941851
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394155,344,577 - 155,445,849 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032886   ⟸   NM_008860
- Peptide Label: isoform a
- UniProtKB: Q02956 (UniProtKB/Swiss-Prot),   Q3V341 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034168   ⟸   NM_001039079
- Peptide Label: isoform b
- UniProtKB: Q3V341 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538719   ⟸   XM_006538656
- Peptide Label: isoform X2
- UniProtKB: Q3V341 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248509   ⟸   XM_011250207
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017175531   ⟸   XM_017320042
- Peptide Label: isoform X2
- UniProtKB: Q3V341 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342107   ⟸   NM_001355178
- Peptide Label: isoform c
RefSeq Acc Id: XP_030109177   ⟸   XM_030253317
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000101249   ⟸   ENSMUST00000105624
RefSeq Acc Id: ENSMUSP00000116042   ⟸   ENSMUST00000131975
RefSeq Acc Id: ENSMUSP00000030922   ⟸   ENSMUST00000030922
RefSeq Acc Id: ENSMUSP00000121675   ⟸   ENSMUST00000123652
RefSeq Acc Id: ENSMUSP00000099467   ⟸   ENSMUST00000103178
RefSeq Acc Id: XP_036019727   ⟸   XM_036163834
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q02956-F1-model_v2 AlphaFold Q02956 1-592 view protein structure

Promoters
RGD ID:6835916
Promoter ID:MM_KWN:41136
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000024800
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,642,121 - 154,643,222 (-)MPROMDB
RGD ID:6835915
Promoter ID:MM_KWN:41137
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000024799
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,646,676 - 154,647,176 (-)MPROMDB
RGD ID:6835911
Promoter ID:MM_KWN:41138
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000024798
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,675,451 - 154,675,951 (-)MPROMDB
RGD ID:6835912
Promoter ID:MM_KWN:41139
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:ENSMUST00000103178,   OTTMUST00000024794,   OTTMUST00000024795,   OTTMUST00000024796,   OTTMUST00000024797
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,719,126 - 154,719,777 (-)MPROMDB
RGD ID:6835914
Promoter ID:MM_KWN:41140
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:NM_008860,   UC008WDE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364154,735,254 - 154,735,754 (-)MPROMDB
RGD ID:6885766
Promoter ID:EPDNEW_M6334
Type:initiation region
Name:Prkcz_1
Description:Mus musculus protein kinase C, zeta , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384155,345,750 - 155,345,810EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97602 AgrOrtholog
Ensembl Genes ENSMUSG00000029053 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030922 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000099467 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000101249 UniProtKB/TrEMBL
  ENSMUSP00000116042 UniProtKB/TrEMBL
  ENSMUSP00000121675 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030922 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000103178 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000105624 UniProtKB/TrEMBL
  ENSMUST00000123652 UniProtKB/TrEMBL
  ENSMUST00000131975 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DAG/PE-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PB1_aPKC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PB1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PKC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18762 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97602 ENTREZGENE
NCBI Gene 18762 ENTREZGENE
Pfam C1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prkcz PhenoGen
PIRSF PKC_zeta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS DAGPEDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PB1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TK_X UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AD72_MOUSE UniProtKB/TrEMBL
  A2AD74_MOUSE UniProtKB/TrEMBL
  A2AD75_MOUSE UniProtKB/TrEMBL
  A4QPC7_MOUSE UniProtKB/TrEMBL
  KPCZ_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3V341 ENTREZGENE, UniProtKB/TrEMBL
  Q6PF82_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AD76 UniProtKB/Swiss-Prot
  Q3UHM5 UniProtKB/Swiss-Prot
  Q7TST7 UniProtKB/Swiss-Prot