Itpkb (inositol 1,4,5-trisphosphate 3-kinase B) - Rat Genome Database

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Gene: Itpkb (inositol 1,4,5-trisphosphate 3-kinase B) Mus musculus
Analyze
Symbol: Itpkb
Name: inositol 1,4,5-trisphosphate 3-kinase B
RGD ID: 1618804
MGI Page MGI
Description: Enables inositol-1,4,5-trisphosphate 3-kinase activity. Acts upstream of or within several processes, including common myeloid progenitor cell proliferation; negative regulation of neutrophil apoptotic process; and regulation of hemopoiesis. Located in cytosol; membrane; and nucleus. Is expressed in alimentary system; facial bone primordium; liver; nervous system; and urinary system. Orthologous to human ITPKB (inositol-trisphosphate 3-kinase B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110033J02Rik; E130307H12Rik; inositol-trisphosphate 3-kinase B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,156,655 - 180,252,367 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,158,050 - 180,252,367 (+)EnsemblGRCm39 Ensembl
GRCm381180,330,390 - 180,424,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,330,485 - 180,424,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,260,607 - 182,353,790 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,167,151 - 182,260,334 (+)NCBIMGSCv36mm8
Celera1187,393,960 - 187,488,842 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMousegastrointestinal stromal tumor  ISOITPKB (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
ItpkbMousemyeloproliferative neoplasm  ISOITPKB (Homo sapiens)8554872ClinVar Annotator: match by term: Myeloproliferative neoplasm and unclassifiableClinVarPMID:25741868 and PMID:35101336
ItpkbMouseparathyroid carcinoma  ISOITPKB (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532

1 to 20 of 81 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMouse(S)-nicotine increases expressionISOItpkb (Rattus norvegicus)6480464Nicotine results in increased expression of ITPKB mRNACTDPMID:11478936
ItpkbMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ITPKB mRNACTDPMID:33956508
ItpkbMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOItpkb (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of ITPKB mRNACTDPMID:33387578
ItpkbMouse3,4-methylenedioxymethamphetamine increases expressionEXP 6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of ITPKB mRNACTDPMID:20188158
ItpkbMouse4,4'-sulfonyldiphenol increases methylationEXP 6480464bisphenol S results in increased methylation of ITPKB exonCTDPMID:33297965
ItpkbMouse8-Br-cAMP increases expressionISOITPKB (Homo sapiens)64804648-Bromo Cyclic Adenosine Monophosphate results in increased expression of ITPKB mRNACTDPMID:22079614
ItpkbMouseacetamide increases expressionISOItpkb (Rattus norvegicus)6480464acetamide results in increased expression of ITPKB mRNACTDPMID:31881176
ItpkbMouseacrolein multiple interactionsISOITPKB (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of ITPKB mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in decreased expression of ITPKB mRNACTDPMID:32699268
ItpkbMouseacrylamide decreases expressionISOItpkb (Rattus norvegicus)6480464Acrylamide results in decreased expression of ITPKB mRNACTDPMID:28959563
ItpkbMouseaflatoxin B1 decreases methylationISOITPKB (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of ITPKB intronCTDPMID:30157460
ItpkbMouseAflatoxin B2 alpha increases methylationISOITPKB (Homo sapiens)6480464aflatoxin B2 results in increased methylation of ITPKB intronCTDPMID:30157460
ItpkbMouseall-trans-retinoic acid multiple interactionsEXP 6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in increased expression of ITPKB mRNACTDPMID:36189433
ItpkbMousealpha-pinene multiple interactionsISOITPKB (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of ITPKB mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in decreased expression of ITPKB mRNACTDPMID:32699268
ItpkbMouseammonium chloride affects expressionISOItpkb (Rattus norvegicus)6480464Ammonium Chloride affects the expression of ITPKB mRNACTDPMID:16483693
ItpkbMouseantirheumatic drug increases expressionISOITPKB (Homo sapiens)6480464Antirheumatic Agents results in increased expression of ITPKB mRNACTDPMID:24449571
ItpkbMouseavobenzone increases expressionISOITPKB (Homo sapiens)6480464avobenzone results in increased expression of ITPKB mRNACTDPMID:31016361
ItpkbMousebenzo[a]pyrene decreases methylationISOITPKB (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of ITPKB exon and Benzo(a)pyrene results in decreased methylation of ITPKB promoterCTDPMID:27901495
ItpkbMousebenzo[a]pyrene increases methylationISOITPKB (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of ITPKB 5' UTRCTDPMID:27901495
ItpkbMousebenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of ITPKB exon and Benzo(a)pyrene results in increased methylation of ITPKB intronCTDPMID:27901495
ItpkbMousebenzo[e]pyrene increases methylationISOITPKB (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of ITPKB exonCTDPMID:30157460

1 to 20 of 81 rows

Biological Process
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMousecell surface receptor signaling pathway acts_upstream_of_or_withinIMPMGI:30397992290270 PMID:15064401MGIPMID:15064401
ItpkbMousecellular response to calcium ion involved_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMousecommon myeloid progenitor cell proliferation acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:18339802MGIPMID:18339802
ItpkbMouseinositol phosphate biosynthetic process involved_inIBAPANTHER:PTN004357288 more ...2290270 GO_CentralGO_REF:0000033
ItpkbMouseinositol trisphosphate metabolic process involved_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMouseMAPK cascade acts_upstream_of_or_withinIMPMGI:30397992290270 PMID:15064401MGIPMID:15064401
ItpkbMousemyeloid cell homeostasis acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:18339802MGIPMID:18339802
ItpkbMousenegative regulation of myeloid cell differentiation acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:18339802MGIPMID:18339802
ItpkbMousenegative regulation of neutrophil apoptotic process acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:18339802MGIPMID:18339802
ItpkbMousephosphatidylinositol phosphate biosynthetic process involved_inIBAPANTHER:PTN000274018 more ...2290270 GO_CentralGO_REF:0000033
ItpkbMousephosphatidylinositol phosphate biosynthetic process involved_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMousepositive regulation of alpha-beta T cell differentiation acts_upstream_of_or_withinIMPMGI:30397992290270 PMID:15064401MGIPMID:15064401
ItpkbMousepositive regulation of Ras protein signal transduction acts_upstream_of_or_withinIMPMGI:30397992290270 PMID:15064401MGIPMID:15064401
ItpkbMousepositive thymic T cell selection acts_upstream_of_or_withinIMPMGI:30397992290270 PMID:15064401MGIPMID:15064401
ItpkbMouseregulation of protein phosphorylation acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:18339802MGIPMID:18339802
ItpkbMouseT cell differentiation acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:14517551MGIPMID:14517551
ItpkbMousethymic T cell selection acts_upstream_of_or_withinIMPMGI:26807202290270 PMID:14517551MGIPMID:14517551
1 to 17 of 17 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMousecytoplasm is_active_inIBAPANTHER:PTN000963625 more ...2290270 GO_CentralGO_REF:0000033
ItpkbMousecytoplasm located_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMousecytoskeleton located_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMousecytosol located_inIDA 2290270 PMID:15381088MGIPMID:15381088
ItpkbMouseendoplasmic reticulum located_inISOUniProtKB:P279872290270 GO_CentralGO_REF:0000119
ItpkbMousemembrane located_inIDA 2290270 PMID:15381088MGIPMID:15381088
ItpkbMousenucleus is_active_inIBAPANTHER:PTN000963625 more ...2290270 GO_CentralGO_REF:0000033
ItpkbMousenucleus located_inIDA 2290270 PMID:15381088MGIPMID:15381088

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMouseinositol phosphate metabolic pathway  IEA 6907045 KEGGmmu:00562
ItpkbMousephosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGmmu:04070
1 to 20 of 22 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkbMouseabnormal T cell physiology  IAGP 5509061 MGIPMID:15064401
ItpkbMouseabnormal thymocyte activation  IAGP 5509061 MGIPMID:14517551
ItpkbMouseabnormal thymus involution  IAGP 5509061 MGIPMID:14517551
ItpkbMouseabsent CD4-positive, alpha-beta T cells  IAGP 5509061 MGIPMID:14517551
ItpkbMouseabsent CD8-positive, alpha-beta T cells  IAGP 5509061 MGIPMID:14517551
ItpkbMouseabsent T cells  IAGP 5509061 MGIPMID:14517551
ItpkbMouseabsent thymus medulla  IAGP 5509061 MGIPMID:14517551
ItpkbMousearrested T cell differentiation  IAGP 5509061 MGIPMID:14517551
ItpkbMousearrested T cell differentiation  IAGP 5509061 MGIPMID:15064401
ItpkbMousedecreased IgG level  IAGP 5509061 MGIPMID:14517551
ItpkbMousedecreased IgG1 level  IAGP 5509061 MGIPMID:14517551
ItpkbMousedecreased IgG2a level  IAGP 5509061 MGIPMID:14517551
ItpkbMousedecreased IgG2b level  IAGP 5509061 MGIPMID:14517551
ItpkbMousedecreased locomotor activity  IAGP 5509061 MGIPMID:14517551
ItpkbMousediarrhea  IAGP 5509061 MGIPMID:14517551
ItpkbMousedistended abdomen  IAGP 5509061 MGIPMID:14517551
ItpkbMousedistended stomach  IAGP 5509061 MGIPMID:14517551
ItpkbMouseincreased double-positive T cell number  IAGP 5509061 MGIPMID:14517551
ItpkbMouseincreased susceptibility to parasitic infection  IAGP 5509061 MGIPMID:14517551
ItpkbMousepostnatal growth retardation  IAGP 5509061 MGIPMID:14517551
1 to 20 of 22 rows

#
Reference Title
Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:9027500   PMID:9226383   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11092979   PMID:11217851   PMID:11919667   PMID:12466851   PMID:12477932  
PMID:14517551   PMID:14610273   PMID:14681479   PMID:15064401   PMID:15381088   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16262249   PMID:17355905   PMID:17412921   PMID:17417640  
PMID:17709751   PMID:17825589   PMID:18339802   PMID:19342645   PMID:20452702   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22981169   PMID:23175687   PMID:25788703   PMID:26121493  
PMID:26880557   PMID:31697815   PMID:33443159   PMID:33785611   PMID:37142655  



Itpkb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,156,655 - 180,252,367 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,158,050 - 180,252,367 (+)EnsemblGRCm39 Ensembl
GRCm381180,330,390 - 180,424,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,330,485 - 180,424,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,260,607 - 182,353,790 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,167,151 - 182,260,334 (+)NCBIMGSCv36mm8
Celera1187,393,960 - 187,488,842 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.27NCBI
ITPKB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,631,690 - 226,739,282 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,631,690 - 226,739,323 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,819,391 - 226,926,983 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,886,014 - 224,991,818 (-)NCBINCBI36Build 36hg18NCBI36
Build 341223,126,126 - 223,231,930NCBI
Celera1200,010,306 - 200,117,787 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1197,336,497 - 197,443,479 (-)NCBIHuRef
CHM1_11228,092,188 - 228,199,660 (-)NCBICHM1_1
T2T-CHM13v2.01225,819,873 - 225,927,469 (-)NCBIT2T-CHM13v2.0
Itpkb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81394,601,072 - 94,696,180 (+)NCBIGRCr8
mRatBN7.21392,069,160 - 92,164,281 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,069,216 - 92,162,004 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1394,574,383 - 94,667,140 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01395,974,568 - 96,067,342 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,149,283 - 93,242,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01398,615,287 - 98,710,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1398,615,287 - 98,708,149 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013103,624,308 - 103,716,372 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,044,260 - 96,138,456 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11396,235,230 - 96,327,084 (+)NCBI
Celera1391,617,603 - 91,709,915 (+)NCBICelera
RH 3.4 Map13629.9RGD
Cytogenetic Map13q26NCBI
Itpkb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955489725,759 - 814,180 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955489726,641 - 814,180 (-)NCBIChiLan1.0ChiLan1.0
ITPKB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2122,799,337 - 22,907,636 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1122,747,787 - 22,856,066 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01202,091,263 - 202,198,880 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11207,084,883 - 207,191,692 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1207,084,883 - 207,191,678 (-)Ensemblpanpan1.1panPan2
ITPKB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,253,257 - 38,346,400 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,253,407 - 38,343,345 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha737,736,914 - 37,828,383 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,089,021 - 38,180,423 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,087,507 - 38,185,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1737,928,053 - 38,019,442 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0737,935,010 - 38,026,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,205,654 - 38,297,131 (+)NCBIUU_Cfam_GSD_1.0
Itpkb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934451,270,129 - 51,387,160 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365263,376,786 - 3,477,554 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365263,378,046 - 3,477,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPKB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11014,362,883 - 14,469,586 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,758,349 - 16,763,114 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITPKB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,009,464 - 3,117,729 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,009,353 - 3,118,235 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,015,041 - 3,123,072 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpkb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624807658,231 - 741,195 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624807658,334 - 741,018 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Itpkb
5351 total Variants

Predicted Target Of
Summary Value
Count of predictions:1218
Count of miRNA genes:601
Interacting mature miRNAs:732
Transcripts:ENSMUST00000070181
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 89 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse

1 to 10 of 89 rows
RH94655  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,332,752 - 180,332,949UniSTSGRCm38
MGSCv371182,262,883 - 182,263,080UniSTSGRCm37
Celera1187,396,232 - 187,396,429UniSTS
Cytogenetic Map1H5UniSTS
cM Map1100.0UniSTS
D1Mit426  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,411,621 - 180,411,702UniSTSGRCm38
MGSCv371182,341,752 - 182,341,833UniSTSGRCm37
Celera1187,476,747 - 187,476,822UniSTS
Cytogenetic Map1H5UniSTS
cM Map1101.0UniSTS
Whitehead Genetic1101.6UniSTS
UniSTS:234290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,330,499 - 180,330,732UniSTSGRCm38
MGSCv371182,260,630 - 182,260,863UniSTSGRCm37
Celera1187,393,983 - 187,394,216UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map1H5UniSTS
cM Map1100.0UniSTS
RH140655  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381180,330,528 - 180,330,720UniSTSGRCm38
MGSCv371182,260,659 - 182,260,851UniSTSGRCm37
Celera1187,394,012 - 187,394,204UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1H4UniSTS
cM Map1100.0UniSTS
Itpkb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H5UniSTS
cM Map1100.0UniSTS
cM Map4 UniSTS
Itpkb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H5UniSTS






1 to 16 of 16 rows
RefSeq Transcripts NM_001081175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001418285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001418286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC157986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSMUST00000070181   ⟹   ENSMUSP00000069851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,158,050 - 180,252,367 (+)Ensembl
GRCm38.p6 Ensembl1180,330,485 - 180,424,802 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,161,431 - 180,166,023 (+)Ensembl
GRCm38.p6 Ensembl1180,333,866 - 180,338,458 (+)Ensembl
RefSeq Acc Id: NM_001081175   ⟹   NP_001074644
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,158,086 - 180,252,367 (+)NCBI
GRCm381180,330,476 - 180,423,659 (+)NCBI
MGSCv371182,260,607 - 182,353,790 (+)RGD
Celera1187,393,960 - 187,488,842 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001418285   ⟹   NP_001405214
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,159,141 - 180,252,367 (+)NCBI
RefSeq Acc Id: NM_001418286   ⟹   NP_001405215
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,209,888 - 180,252,367 (+)NCBI
RefSeq Acc Id: XM_006496902   ⟹   XP_006496965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,156,655 - 180,208,712 (+)NCBI
GRCm381180,330,390 - 180,381,630 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254969   ⟹   XP_030110829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,159,073 - 180,252,367 (+)NCBI
GRCm381180,331,586 - 180,424,802 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001074644   ⟸   NM_001081175
- Peptide Label: isoform a
- UniProtKB: B2RXC2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496965   ⟸   XM_006496902
- Peptide Label: isoform X2
- UniProtKB: Q8BKB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030110829   ⟸   XM_030254969
- Peptide Label: isoform X1
- UniProtKB: B2RXC2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000069851   ⟸   ENSMUST00000070181
RefSeq Acc Id: NP_001405214   ⟸   NM_001418285
- Peptide Label: isoform a
- UniProtKB: B2RXC2 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-B2RXC2-F1-model_v2 AlphaFold B2RXC2 1-942 view protein structure

RGD ID:6875916
Promoter ID:EPDNEW_M1409
Type:initiation region
Name:Itpkb_1
Description:Mus musculus inositol 1,4,5-trisphosphate 3-kinase B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,330,527 - 180,330,587EPDNEW
RGD ID:6875918
Promoter ID:EPDNEW_M1410
Type:multiple initiation site
Name:AK050506_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381180,333,897 - 180,333,957EPDNEW
RGD ID:6817961
Promoter ID:MM_KWN:3121
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000097449,   OTTMUST00000051715
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361182,260,516 - 182,261,016 (+)MPROMDB
RGD ID:6846614
Promoter ID:MM_ACW:3417
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung
Transcripts:ITPKB.BSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361182,263,091 - 182,264,177 (+)MPROMDB


1 to 16 of 16 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000038855 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070181 ENTREZGENE
  ENSMUST00000070181.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.470.160 UniProtKB/TrEMBL
InterPro IPK UniProtKB/TrEMBL
  IPK_sf UniProtKB/TrEMBL
KEGG Report mmu:320404 UniProtKB/TrEMBL
MGD MGI:109235 ENTREZGENE
NCBI Gene Itpkb ENTREZGENE
PANTHER INOSITOL-TRISPHOSPHATE 3-KINASE B UniProtKB/TrEMBL
  IPK UniProtKB/TrEMBL
Pfam IPK UniProtKB/TrEMBL
PhenoGen Itpkb PhenoGen
Superfamily-SCOP SAICAR synthase-like UniProtKB/TrEMBL
UniProt B2RXC2 ENTREZGENE, UniProtKB/TrEMBL
  Q8BKB2 ENTREZGENE, UniProtKB/TrEMBL
1 to 16 of 16 rows