Cplaq13_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Cplaq13_m (circadian period of locomotor activity 13 (mouse)) Mus musculus

Symbol: Cplaq13_m
Name: circadian period of locomotor activity 13 (mouse)
RGD ID: 10045887
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391172,831,765 - 181,400,659MOUSEQTLGRCm39
GRCm381173,004,198 - 181,573,094MOUSEQTLGRCm38
cM Map1syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cplaq13_mMousebehavior/neurological phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:10547923
Cplaq13_mMouseshortened circadian behavior period  IAGP 5509061 MGIPMID:10547923

#
Reference Title
Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:10547923  



1 to 20 of 358 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2302711Or10f1-ps1olfactory receptor family 10 subfamily F member 1, pseudogene 11172924987172925918Mouse
1550501Or10j27olfactory receptor family 10 subfamily J member 271172957767172964901Mouse
1621919Or10j28-ps1olfactory receptor family 10 subfamily J member 28, pseudogene 11172976738172977921Mouse
1552990Or10j7olfactory receptor family 10 subfamily J member 71173011009173012071Mouse
1551264Or10j3olfactory receptor family 10 subfamily J member 3B1173030925173031866Mouse
1552197Or10j3bolfactory receptor family 10 subfamily J member 3B1173043174173044207Mouse
10570Fcer1aFc receptor, IgE, high affinity I, alpha polypeptide1173048836173054799Mouse
1316838Or10j2olfactory receptor family 10 subfamily J member 21173097714173098704Mouse
5145795Mptx2mucosal pentraxin 21173102028173105323Mouse
1621633Ackr1atypical chemokine receptor 1 (Duffy blood group)1173159457173161079Mouse
1315992Cadm3cell adhesion molecule 31173161825173195214Mouse
329968348LOC131296761STARR-seq mESC enhancer starr_030741173166671173168947Mouse
329968659LOC131296762STARR-seq mESC enhancer starr_030751173175628173177649Mouse
1622795Aim2absent in melanoma 21173177105173293606Mouse
7488861n-TRtct5nuclear encoded tRNA arginine 5 (anticodon TCT)1173217895173217968Mouse
401835899LOC132408375STARR-positive B cell enhancer mm9_chr1:175328755-1753290561173226190173226491Mouse
329966768LOC131296763STARR-seq mESC enhancer starr_030761173229635173230595Mouse
401835756LOC132408376STARR-positive B cell enhancer ABC_E20211173239422173239723Mouse
329965104LOC131296764STARR-seq mESC enhancer starr_030771173246129173247261Mouse
401840579LOC132408377STARR-positive B cell enhancer ABC_E15741173247669173247970Mouse

1 to 20 of 358 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match

1 to 10 of 127 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse

1 to 10 of 127 rows


Database
Acc Id
Source(s)
MGD MGI:5618422 MouseQtl

Note Type Note Reference