Gm24919 (predicted gene, 24919) - Rat Genome Database

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Gene: Gm24919 (predicted gene, 24919) Mus musculus
Analyze
Symbol: Gm24919
Name: predicted gene, 24919
RGD ID: 15001471
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,218,384 - 178,218,489 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,218,384 - 178,218,489 (+)EnsemblGRCm39 Ensembl
GRCm381178,390,819 - 178,390,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,390,819 - 178,390,924 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1H4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gm24919
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,218,384 - 178,218,489 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,218,384 - 178,218,489 (+)EnsemblGRCm39 Ensembl
GRCm381178,390,819 - 178,390,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,390,819 - 178,390,924 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1H4NCBI
RNU6-809P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,028,894 - 64,029,000 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,028,894 - 64,029,000 (-)EnsemblGRCh38hg38GRCh38
GRCh37164,494,566 - 64,494,672 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p31.3NCBI
CHM1_1164,610,323 - 64,610,429 (-)NCBICHM1_1
T2T-CHM13v2.0163,904,676 - 63,904,782 (-)NCBIT2T-CHM13v2.0
LOC120096462
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81392,670,157 - 92,670,253 (+)NCBIGRCr8
mRatBN7.21390,138,129 - 90,138,225 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1390,138,129 - 90,138,225 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1390,138,129 - 90,138,225 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1396,290,003 - 96,290,099 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map13q25NCBI

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Variants in Gm24919
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSMUST00000083020
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 95 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse

1 to 10 of 95 rows





RefSeq Transcripts XR_004936720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC157809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000083020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,218,384 - 178,218,489 (+)Ensembl
GRCm38.p6 Ensembl1178,390,819 - 178,390,924 (+)Ensembl
RefSeq Acc Id: XR_004936720
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,218,384 - 178,218,489 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000064954 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083020 ENTREZGENE
MGD MGI:5454696 ENTREZGENE
NCBI Gene Gm24919 ENTREZGENE
PhenoGen Gm24919 PhenoGen
RNAcentral URS000069D880 RNACentral