Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autistic disorder | | ISO | PLD5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20663923 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | autistic disorder | | ISO | PLD5 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:20663923 | |
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# | Reference Title | Reference Citation |
1. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:16141072 | PMID:16141073 | PMID:21267068 | PMID:21319224 | PMID:21677750 |
PMID:24652767 | PMID:27626380 | PMID:30973865 |
Pld5 (Mus musculus - house mouse) |
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PLD5 (Homo sapiens - human) |
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Pld5 (Rattus norvegicus - Norway rat) |
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Pld5 (Chinchilla lanigera - long-tailed chinchilla) |
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PLD5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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PLD5 (Canis lupus familiaris - dog) |
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Pld5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PLD5 (Sus scrofa - pig) |
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PLD5 (Chlorocebus sabaeus - green monkey) |
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Pld5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Pld5
11942 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AA673428 |
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Rbm8a |
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RefSeq Transcripts | NM_001195816 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001357844 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001357845 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001357846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001357847 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_176916 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006496897 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006496898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006496900 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011238827 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030254896 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030254898 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030254901 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030254909 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036165683 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC124463 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AC124684 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC147236 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC153644 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK043287 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK046294 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK082725 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK136851 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK136888 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK144116 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC100428 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BU609501 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466555 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CK626039 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000065967 ⟹ ENSMUSP00000069326 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000111166 ⟹ ENSMUSP00000106796 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000111167 ⟹ ENSMUSP00000106797 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000125404 ⟹ ENSMUSP00000121428 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000144340 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000156184 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001195816 ⟹ NP_001182745 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357844 ⟹ NP_001344773 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357845 ⟹ NP_001344774 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357846 ⟹ NP_001344775 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357847 ⟹ NP_001344776 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_176916 ⟹ NP_795890 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006496897 ⟹ XP_006496960 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006496898 ⟹ XP_006496961 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006496900 ⟹ XP_006496963 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011238827 ⟹ XP_011237129 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030254896 ⟹ XP_030110756 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030254898 ⟹ XP_030110758 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030254901 ⟹ XP_030110761 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030254909 ⟹ XP_030110769 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036165683 ⟹ XP_036021576 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001182745 | (Get FASTA) | NCBI Sequence Viewer |
NP_001344773 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001344774 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001344775 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001344776 | (Get FASTA) | NCBI Sequence Viewer | |
NP_795890 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006496960 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006496961 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006496963 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011237129 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030110756 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030110758 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030110761 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030110769 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036021576 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI00429 | (Get FASTA) | NCBI Sequence Viewer |
BAC31515 | (Get FASTA) | NCBI Sequence Viewer | |
BAE23146 | (Get FASTA) | NCBI Sequence Viewer | |
BAE23156 | (Get FASTA) | NCBI Sequence Viewer | |
BAE25709 | (Get FASTA) | NCBI Sequence Viewer | |
EDL13200 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000069326 | ||
ENSMUSP00000069326.8 | |||
ENSMUSP00000106796.2 | |||
ENSMUSP00000106797 | |||
ENSMUSP00000106797.2 | |||
ENSMUSP00000121428.2 | |||
GenBank Protein | Q3UNN8 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_795890 ⟸ NM_176916 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q3UVW3 (UniProtKB/Swiss-Prot), Q497Q7 (UniProtKB/Swiss-Prot), Q3UNN8 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001182745 ⟸ NM_001195816 |
- Peptide Label: | isoform 2 precursor |
- UniProtKB: | D3YYN6 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006496960 ⟸ XM_006496897 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006496963 ⟸ XM_006496900 |
- Peptide Label: | isoform X7 |
- UniProtKB: | Q3UNN8 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006496961 ⟸ XM_006496898 |
- Peptide Label: | isoform X5 |
- Sequence: |
RefSeq Acc Id: | XP_011237129 ⟸ XM_011238827 |
- Peptide Label: | isoform X6 |
- Sequence: |
RefSeq Acc Id: | XP_030110769 ⟸ XM_030254909 |
- Peptide Label: | isoform X7 |
RefSeq Acc Id: | XP_030110758 ⟸ XM_030254898 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_030110756 ⟸ XM_030254896 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | XP_030110761 ⟸ XM_030254901 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | NP_001344775 ⟸ NM_001357846 |
- Peptide Label: | isoform 4 |
RefSeq Acc Id: | NP_001344773 ⟸ NM_001357844 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | NP_001344776 ⟸ NM_001357847 |
- Peptide Label: | isoform 4 |
RefSeq Acc Id: | NP_001344774 ⟸ NM_001357845 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | ENSMUSP00000106796 ⟸ ENSMUST00000111166 |
RefSeq Acc Id: | ENSMUSP00000106797 ⟸ ENSMUST00000111167 |
RefSeq Acc Id: | ENSMUSP00000121428 ⟸ ENSMUST00000125404 |
RefSeq Acc Id: | ENSMUSP00000069326 ⟸ ENSMUST00000065967 |
RefSeq Acc Id: | XP_036021576 ⟸ XM_036165683 |
- Peptide Label: | isoform X7 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q3UNN8-F1-model_v2 | AlphaFold | Q3UNN8 | 1-536 | view protein structure |
RGD ID: | 6875852 | ||||||||
Promoter ID: | EPDNEW_M1377 | ||||||||
Type: | initiation region | ||||||||
Name: | Pld5_1 | ||||||||
Description: | Mus musculus phospholipase D family, member 5 , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6818250 | ||||||||
Promoter ID: | MM_KWN:3025 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Brain | ||||||||
Transcripts: | OTTMUST00000059165, UC007DTV.1 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:2442056 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000055214 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000065967 | ENTREZGENE |
ENSMUST00000065967.14 | UniProtKB/Swiss-Prot | |
ENSMUST00000111166.2 | UniProtKB/TrEMBL | |
ENSMUST00000111167 | ENTREZGENE | |
ENSMUST00000111167.2 | UniProtKB/TrEMBL | |
ENSMUST00000125404.8 | UniProtKB/TrEMBL | |
Gene3D-CATH | Endonuclease Chain A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | PLDc_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PLipase_D/transphosphatidylase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:319455 | UniProtKB/Swiss-Prot |
MGD | MGI:2442056 | ENTREZGENE |
NCBI Gene | 319455 | ENTREZGENE |
PANTHER | INACTIVE PHOSPHOLIPASE D5 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PHOSPHOLIPASE D - RELATED | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | PLDc_3 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Pld5 | PhenoGen |
PROSITE | PLD | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SMART | PLDc | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | Phospholipase D/nuclease | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | D3YYN6 | ENTREZGENE, UniProtKB/TrEMBL |
D3YZ01_MOUSE | UniProtKB/TrEMBL | |
D6RCJ9_MOUSE | UniProtKB/TrEMBL | |
PLD5_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE | |
Q3UVW3 | ENTREZGENE | |
Q497Q7 | ENTREZGENE | |
Q8BXV3_MOUSE | UniProtKB/TrEMBL | |
UniProt Secondary | Q3UVW3 | UniProtKB/Swiss-Prot |
Q497Q7 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2023-09-13 | Pld5 | phospholipase D family member 5 | Pld5 | phospholipase D family, member 5 | Symbol and/or name change | 5135510 | APPROVED |