Pld5 (phospholipase D family member 5) - Rat Genome Database

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Gene: Pld5 (phospholipase D family member 5) Mus musculus
Analyze
Symbol: Pld5
Name: phospholipase D family member 5
RGD ID: 1616447
MGI Page MGI
Description: Predicted to enable catalytic activity. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human PLD5 (phospholipase D family member 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B230365F16Rik; inactive choline phosphatase 5; inactive phosphatidylcholine-hydrolyzing phospholipase D5; inactive phospholipase D5; inactive PLD 5; phospholipase D family, member 5; phospholipase D5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,789,867 - 176,109,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,789,872 - 176,102,878 (-)EnsemblGRCm39 Ensembl
GRCm381175,962,301 - 176,281,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,962,306 - 176,275,312 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,892,437 - 178,205,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,798,981 - 178,112,280 (-)NCBIMGSCv36mm8
Celera1183,041,914 - 183,365,812 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map181.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21319224   PMID:21677750  
PMID:24652767   PMID:27626380   PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
Pld5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,789,867 - 176,109,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,789,872 - 176,102,878 (-)EnsemblGRCm39 Ensembl
GRCm381175,962,301 - 176,281,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,962,306 - 176,275,312 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,892,437 - 178,205,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,798,981 - 178,112,280 (-)NCBIMGSCv36mm8
Celera1183,041,914 - 183,365,812 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map181.9NCBI
PLD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,082,986 - 242,530,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1242,082,986 - 242,524,697 (-)EnsemblGRCh38hg38GRCh38
GRCh371242,246,288 - 242,687,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361240,318,895 - 240,754,621 (-)NCBINCBI36Build 36hg18NCBI36
Celera1215,507,475 - 215,943,236 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1212,919,621 - 213,122,645 (-)NCBIHuRef
HuRef1212,711,210 - 212,853,533 (-)NCBIHuRef
CHM1_11243,524,434 - 243,960,008 (-)NCBICHM1_1
T2T-CHM13v2.01241,495,068 - 241,942,534 (-)NCBIT2T-CHM13v2.0
Pld5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81390,426,689 - 90,765,072 (-)NCBIGRCr8
mRatBN7.21387,895,694 - 88,232,868 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1387,896,369 - 88,232,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1390,384,330 - 90,737,885 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01391,784,609 - 92,138,157 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01388,966,952 - 89,321,111 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01394,025,696 - 94,355,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,025,369 - 94,355,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01398,486,317 - 98,812,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,715,000 - 92,058,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1387,485,947 - 87,815,991 (-)NCBICelera
Cytogenetic Map13q24NCBI
Pld5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,816,926 - 6,138,579 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554065,810,286 - 5,994,601 (-)NCBIChiLan1.0ChiLan1.0
PLD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v216,622,753 - 7,069,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116,845,185 - 7,291,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01217,640,005 - 218,081,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,624,198 - 222,798,210 (-)NCBIpanpan1.1PanPan1.1panPan2
PLD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1733,422,964 - 33,836,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl733,429,409 - 33,836,258 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha732,901,116 - 33,309,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0733,249,160 - 33,659,927 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl733,253,065 - 33,659,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1733,086,377 - 33,499,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0733,106,517 - 33,517,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0733,360,227 - 33,774,810 (-)NCBIUU_Cfam_GSD_1.0
Pld5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934446,305,137 - 46,692,149 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365268,055,339 - 8,441,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365268,055,190 - 8,447,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1015,420,608 - 15,723,479 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11015,420,600 - 15,723,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21017,750,621 - 17,841,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12579,164,501 - 79,584,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2579,171,369 - 79,519,763 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605581,338,470 - 81,758,441 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pld5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477116,745,555 - 17,102,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477116,745,575 - 17,109,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1919
Count of miRNA genes:636
Interacting mature miRNAs:824
Transcripts:ENSMUST00000065967, ENSMUST00000111166, ENSMUST00000111167, ENSMUST00000125404, ENSMUST00000144340, ENSMUST00000156184
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1300960Hpic2_mhaloperidol induced catalepsy 2 (mouse)Not determined1175468817181400659Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse

Markers in Region
AA673428  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,630,925 - 96,631,545UniSTSGRCm38
GRCm381175,978,454 - 175,978,645UniSTSGRCm38
MGSCv371177,908,585 - 177,908,776UniSTSGRCm37
MGSCv37396,434,848 - 96,435,468UniSTSGRCm37
Celera1183,058,060 - 183,058,251UniSTS
Celera398,037,941 - 98,038,561UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map3H3UniSTS
Cytogenetic Map1H4UniSTS
Whitehead/MRC_RH12194.92UniSTS
Rbm8a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38396,630,338 - 96,631,873UniSTSGRCm38
GRCm381175,978,245 - 175,978,806UniSTSGRCm38
MGSCv37396,434,261 - 96,435,796UniSTSGRCm37
MGSCv371177,908,376 - 177,908,937UniSTSGRCm37
Celera398,037,353 - 98,038,889UniSTS
Celera1183,057,851 - 183,058,412UniSTS
Cytogenetic Map3H3UniSTS
Cytogenetic Map1H4UniSTS
cM Map3 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_176916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU609501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK626039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000065967   ⟹   ENSMUSP00000069326
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,789,872 - 176,102,864 (-)Ensembl
GRCm38.p6 Ensembl1175,962,306 - 176,275,298 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111166   ⟹   ENSMUSP00000106796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1176,088,306 - 176,102,840 (-)Ensembl
GRCm38.p6 Ensembl1176,260,740 - 176,275,274 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111167   ⟹   ENSMUSP00000106797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,791,278 - 176,041,508 (-)Ensembl
GRCm38.p6 Ensembl1175,963,712 - 176,213,942 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125404   ⟹   ENSMUSP00000121428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,789,973 - 176,102,878 (-)Ensembl
GRCm38.p6 Ensembl1175,962,407 - 176,275,312 (-)Ensembl
Ensembl Acc Id: ENSMUST00000144340
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,818,537 - 176,102,841 (-)Ensembl
GRCm38.p6 Ensembl1175,990,971 - 176,275,275 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156184
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1175,869,870 - 176,041,407 (-)Ensembl
GRCm38.p6 Ensembl1176,042,304 - 176,213,841 (-)Ensembl
RefSeq Acc Id: NM_001195816   ⟹   NP_001182745
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,041,508 (-)NCBI
GRCm381175,962,306 - 176,213,942 (-)NCBI
Celera1183,041,914 - 183,365,812 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357844   ⟹   NP_001344773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,102,878 (-)NCBI
GRCm381175,962,306 - 176,275,312 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357845   ⟹   NP_001344774
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,041,508 (-)NCBI
GRCm381175,962,306 - 176,213,942 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357846   ⟹   NP_001344775
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,102,878 (-)NCBI
GRCm381175,962,306 - 176,275,312 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357847   ⟹   NP_001344776
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,041,508 (-)NCBI
GRCm381175,962,306 - 176,213,942 (-)NCBI
Sequence:
RefSeq Acc Id: NM_176916   ⟹   NP_795890
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,872 - 176,102,878 (-)NCBI
GRCm381175,962,306 - 176,275,312 (-)NCBI
MGSCv371177,892,437 - 178,205,443 (-)RGD
Celera1183,041,914 - 183,365,812 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496897   ⟹   XP_006496960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,109,078 (-)NCBI
GRCm381175,962,301 - 176,281,512 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496898   ⟹   XP_006496961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 175,967,664 (-)NCBI
GRCm381175,962,301 - 176,140,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006496900   ⟹   XP_006496963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,109,078 (-)NCBI
GRCm381175,962,301 - 176,275,279 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238827   ⟹   XP_011237129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 175,967,664 (-)NCBI
GRCm381175,962,301 - 176,140,073 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254896   ⟹   XP_030110756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,076,534 (-)NCBI
GRCm381175,962,301 - 176,252,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254898   ⟹   XP_030110758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,076,538 (-)NCBI
GRCm381175,962,301 - 176,252,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254901   ⟹   XP_030110761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,041,638 (-)NCBI
GRCm381175,962,301 - 176,140,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254909   ⟹   XP_030110769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,102,865 (-)NCBI
GRCm381175,962,301 - 176,275,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165683   ⟹   XP_036021576
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391175,789,867 - 176,041,654 (-)NCBI
Sequence:
RefSeq Acc Id: NP_795890   ⟸   NM_176916
- Peptide Label: isoform 1
- UniProtKB: Q3UVW3 (UniProtKB/Swiss-Prot),   Q497Q7 (UniProtKB/Swiss-Prot),   Q3UNN8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001182745   ⟸   NM_001195816
- Peptide Label: isoform 2 precursor
- UniProtKB: D3YYN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496960   ⟸   XM_006496897
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006496963   ⟸   XM_006496900
- Peptide Label: isoform X7
- UniProtKB: Q3UNN8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496961   ⟸   XM_006496898
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011237129   ⟸   XM_011238827
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_030110769   ⟸   XM_030254909
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030110758   ⟸   XM_030254898
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030110756   ⟸   XM_030254896
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030110761   ⟸   XM_030254901
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001344775   ⟸   NM_001357846
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344773   ⟸   NM_001357844
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344776   ⟸   NM_001357847
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344774   ⟸   NM_001357845
- Peptide Label: isoform 3
Ensembl Acc Id: ENSMUSP00000106796   ⟸   ENSMUST00000111166
Ensembl Acc Id: ENSMUSP00000106797   ⟸   ENSMUST00000111167
Ensembl Acc Id: ENSMUSP00000121428   ⟸   ENSMUST00000125404
Ensembl Acc Id: ENSMUSP00000069326   ⟸   ENSMUST00000065967
RefSeq Acc Id: XP_036021576   ⟸   XM_036165683
- Peptide Label: isoform X7
Protein Domains
PLD phosphodiesterase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UNN8-F1-model_v2 AlphaFold Q3UNN8 1-536 view protein structure

Promoters
RGD ID:6875852
Promoter ID:EPDNEW_M1377
Type:initiation region
Name:Pld5_1
Description:Mus musculus phospholipase D family, member 5 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381176,275,265 - 176,275,325EPDNEW
RGD ID:6818250
Promoter ID:MM_KWN:3025
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000059165,   UC007DTV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361178,143,671 - 178,144,171 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442056 AgrOrtholog
Ensembl Genes ENSMUSG00000055214 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000065967 ENTREZGENE
  ENSMUST00000065967.14 UniProtKB/Swiss-Prot
  ENSMUST00000111166.2 UniProtKB/TrEMBL
  ENSMUST00000111167 ENTREZGENE
  ENSMUST00000111167.2 UniProtKB/TrEMBL
  ENSMUST00000125404.8 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Diverse_PLD-related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLDc_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PLipase_D/transphosphatidylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:319455 UniProtKB/Swiss-Prot
MGD MGI:2442056 ENTREZGENE
NCBI Gene 319455 ENTREZGENE
PANTHER INACTIVE PHOSPHOLIPASE D5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHOSPHOLIPASE D - RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PLDc_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pld5 PhenoGen
PROSITE PLD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PLDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YYN6 ENTREZGENE, UniProtKB/TrEMBL
  D3YZ01_MOUSE UniProtKB/TrEMBL
  D6RCJ9_MOUSE UniProtKB/TrEMBL
  PLD5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UVW3 ENTREZGENE
  Q497Q7 ENTREZGENE
  Q8BXV3_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UVW3 UniProtKB/Swiss-Prot
  Q497Q7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-13 Pld5  phospholipase D family member 5  Pld5  phospholipase D family, member 5  Symbol and/or name change 5135510 APPROVED