PLD5 (phospholipase D family member 5) - Rat Genome Database

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Gene: PLD5 (phospholipase D family member 5) Pan paniscus
Analyze
Symbol: PLD5
Name: phospholipase D family member 5
RGD ID: 11800911
Description: ENCODES a protein that exhibits catalytic activity (inferred); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 54 (ortholog); fumarase deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive phospholipase D5; LOC112437606; uncharacterized LOC112437606
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v216,622,753 - 7,069,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116,845,185 - 7,291,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01217,640,005 - 218,081,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,624,198 - 222,798,210 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PLD5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v216,622,753 - 7,069,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116,845,185 - 7,291,289 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01217,640,005 - 218,081,158 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11222,624,198 - 222,798,210 (-)NCBIpanpan1.1PanPan1.1panPan2
PLD5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,082,986 - 242,530,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1242,082,986 - 242,524,697 (-)EnsemblGRCh38hg38GRCh38
GRCh371242,246,288 - 242,687,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361240,318,895 - 240,754,621 (-)NCBINCBI36Build 36hg18NCBI36
Celera1215,507,475 - 215,943,236 (-)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1212,919,621 - 213,122,645 (-)NCBIHuRef
HuRef1212,711,210 - 212,853,533 (-)NCBIHuRef
CHM1_11243,524,434 - 243,960,008 (-)NCBICHM1_1
T2T-CHM13v2.01241,495,068 - 241,942,534 (-)NCBIT2T-CHM13v2.0
Pld5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,789,867 - 176,109,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,789,872 - 176,102,878 (-)EnsemblGRCm39 Ensembl
GRCm381175,962,301 - 176,281,512 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,962,306 - 176,275,312 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,892,437 - 178,205,443 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,798,981 - 178,112,280 (-)NCBIMGSCv36mm8
Celera1183,041,914 - 183,365,812 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map181.9NCBI
Pld5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81390,426,689 - 90,765,072 (-)NCBIGRCr8
mRatBN7.21387,895,694 - 88,232,868 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1387,896,369 - 88,232,868 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1390,384,330 - 90,737,885 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01391,784,609 - 92,138,157 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01388,966,952 - 89,321,111 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01394,025,696 - 94,355,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1394,025,369 - 94,355,219 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01398,486,317 - 98,812,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41391,715,000 - 92,058,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1387,485,947 - 87,815,991 (-)NCBICelera
Cytogenetic Map13q24NCBI
Pld5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554065,816,926 - 6,138,579 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554065,810,286 - 5,994,601 (-)NCBIChiLan1.0ChiLan1.0
PLD5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1733,422,964 - 33,836,252 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl733,429,409 - 33,836,258 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha732,901,116 - 33,309,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0733,249,160 - 33,659,927 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl733,253,065 - 33,659,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1733,086,377 - 33,499,628 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0733,106,517 - 33,517,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0733,360,227 - 33,774,810 (-)NCBIUU_Cfam_GSD_1.0
Pld5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934446,305,137 - 46,692,149 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365268,055,339 - 8,441,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365268,055,190 - 8,447,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLD5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1015,420,608 - 15,723,479 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11015,420,600 - 15,723,890 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21017,750,621 - 17,841,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLD5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12579,164,501 - 79,584,632 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2579,171,369 - 79,519,763 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605581,338,470 - 81,758,441 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pld5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477116,745,555 - 17,102,752 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477116,745,575 - 17,109,614 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_034949839   ⟹   XP_034805730
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,628,620 - 7,069,206 (+)NCBI
NHGRI_mPanPan116,851,070 - 7,291,289 (+)NCBI
Mhudiblu_PPA_v01217,640,005 - 218,080,177 (-)NCBI
RefSeq Acc Id: XM_034949846   ⟹   XP_034805737
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,703,003 - 7,069,206 (+)NCBI
NHGRI_mPanPan116,925,483 - 7,291,289 (+)NCBI
Mhudiblu_PPA_v01217,640,005 - 218,005,838 (-)NCBI
RefSeq Acc Id: XM_034949861   ⟹   XP_034805752
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,804,453 - 7,069,206 (+)NCBI
NHGRI_mPanPan117,026,777 - 7,291,289 (+)NCBI
Mhudiblu_PPA_v01217,640,005 - 218,081,158 (-)NCBI
RefSeq Acc Id: XM_034949868   ⟹   XP_034805759
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,887,099 - 7,069,206 (+)NCBI
NHGRI_mPanPan117,109,432 - 7,291,289 (+)NCBI
Mhudiblu_PPA_v01217,640,005 - 217,821,879 (-)NCBI
RefSeq Acc Id: XM_055096799   ⟹   XP_054952774
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,622,753 - 7,069,206 (+)NCBI
NHGRI_mPanPan116,845,185 - 7,291,289 (+)NCBI
RefSeq Acc Id: XM_055096882   ⟹   XP_054952857
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,901,117 - 7,069,206 (+)NCBI
NHGRI_mPanPan117,123,469 - 7,291,289 (+)NCBI
RefSeq Acc Id: XM_055096913   ⟹   XP_054952888
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v216,804,458 - 7,069,206 (+)NCBI
NHGRI_mPanPan117,026,782 - 7,291,289 (+)NCBI
RefSeq Acc Id: XP_034805752   ⟸   XM_034949861
- Peptide Label: isoform X4
- UniProtKB: A0A2R9AHT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034805730   ⟸   XM_034949839
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034805737   ⟸   XM_034949846
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034805759   ⟸   XM_034949868
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054952774   ⟸   XM_055096799
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054952888   ⟸   XM_055096913
- Peptide Label: isoform X6
- UniProtKB: A0A2R9AHT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054952857   ⟸   XM_055096882
- Peptide Label: isoform X5
Protein Domains
PLD phosphodiesterase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031548 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039605.1 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease Chain A UniProtKB/TrEMBL
InterPro PLDc_3 UniProtKB/TrEMBL
  PLipase_D/transphosphatidylase UniProtKB/TrEMBL
NCBI Gene PLD5 ENTREZGENE
PANTHER INACTIVE PHOSPHOLIPASE D5 UniProtKB/TrEMBL
  PHOSPHOLIPASE D - RELATED UniProtKB/TrEMBL
Pfam PLDc_3 UniProtKB/TrEMBL
SMART PLDc UniProtKB/TrEMBL
Superfamily-SCOP Phospholipase D/nuclease UniProtKB/TrEMBL
UniProt A0A2R9AHT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 PLD5  phospholipase D family member 5  LOC112437606  uncharacterized LOC112437606  Data merged from RGD:13569435 737654 PROVISIONAL