Fcer1a (Fc receptor, IgE, high affinity I, alpha polypeptide) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Fcer1a (Fc receptor, IgE, high affinity I, alpha polypeptide) Mus musculus
Analyze
Symbol: Fcer1a
Name: Fc receptor, IgE, high affinity I, alpha polypeptide
RGD ID: 10570
MGI Page MGI
Description: Enables IgE binding activity and IgE receptor activity. Acts upstream of or within several processes, including leukotriene biosynthetic process; positive regulation of immune effector process; and positive regulation of macromolecule metabolic process. Located in external side of plasma membrane. Orthologous to human FCER1A (Fc epsilon receptor Ia).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fc-epsilon RI-alpha; FcE; Fce1; Fce1a; fcepsilonri; FcERI; Fcr-; Fcr-5; high affinity immunoglobulin epsilon receptor subunit alpha; igE Fc receptor subunit alpha
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm19059  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,048,836 - 173,054,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,048,851 - 173,054,781 (-)EnsemblGRCm39 Ensembl
GRCm381173,221,269 - 173,227,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,221,284 - 173,227,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,151,402 - 175,157,360 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,057,959 - 175,063,889 (-)NCBIMGSCv36mm8
Celera1176,073,170 - 176,079,126 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMouseasthma  ISOFCER1A (Homo sapiens)5128711Asthma symptoms persistent despite steroids in humansRGD 
Fcer1aMouseasthma severityISOFCER1A (Homo sapiens)9068941Fatal asthma subjectsRGDPMID:20937062 and REF_RGD_ID:5128717
Fcer1aMouserhinitis  ISOFCER1A (Homo sapiens)5128714 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMouseautoimmune interstitial lung, joint, and kidney disease  ISOFCER1A (Homo sapiens)8554872ClinVar Annotator: match by term: Autoimmune interstitial lung disease-arthritis syndromeClinVarPMID:28492532
Fcer1aMousegastrointestinal stromal tumor  ISOFCER1A (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
Fcer1aMouseparathyroid carcinoma  ISOFCER1A (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMousedrug allergy  ISOFCER1A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17125826 and PMID:20485159
Fcer1aMouseDrug Eruptions  ISOFCER1A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16502481
Fcer1aMouseurticaria  ISOFCER1A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16502481 and PMID:20485159

1 to 20 of 43 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMouse1,2-dimethylhydrazine multiple interactionsISOFcer1a (Rattus norvegicus)6480464[APC protein affects the susceptibility to 1 and 2-Dimethylhydrazine] which results in decreased expression of FCER1A mRNACTDPMID:27840820
Fcer1aMouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of FCER1A mRNACTDPMID:22206623
Fcer1aMouse17alpha-ethynylestradiol decreases expressionISOFcer1a (Rattus norvegicus)6480464Ethinyl Estradiol results in decreased expression of FCER1A mRNACTDPMID:15212814
Fcer1aMouse2-palmitoylglycerol increases expressionISOFCER1A (Homo sapiens)64804642-palmitoylglycerol results in increased expression of FCER1A mRNACTDPMID:37199045
Fcer1aMouse4,4'-diaminodiphenylmethane decreases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in decreased expression of FCER1A mRNACTDPMID:18648102
Fcer1aMouseacetylsalicylic acid affects response to substanceISOFCER1A (Homo sapiens)6480464FCER1A gene SNP affects the susceptibility to Aspirin and FCER1A polymorphism affects the susceptibility to AspirinCTDPMID:17125826 and PMID:20485159
Fcer1aMouseacetylsalicylic acid multiple interactionsISOFCER1A (Homo sapiens)6480464Aspirin inhibits the reaction [IL4 results in increased expression of FCER1A mRNA]CTDPMID:19767084
Fcer1aMouseammonium chloride affects expressionISOFcer1a (Rattus norvegicus)6480464Ammonium Chloride affects the expression of FCER1A mRNACTDPMID:16483693
Fcer1aMousearsane decreases expressionISOFCER1A (Homo sapiens)6480464Arsenic results in decreased expression of FCER1A mRNACTDPMID:36861143
Fcer1aMousearsenic atom decreases expressionISOFCER1A (Homo sapiens)6480464Arsenic results in decreased expression of FCER1A mRNACTDPMID:36861143
Fcer1aMouseastemizole multiple interactionsISOFcer1a (Rattus norvegicus)6480464Astemizole inhibits the reaction [FCER1A protein results in increased secretion of HEXB protein]CTDPMID:9088877
Fcer1aMousebenzo[a]pyrene increases expressionISOFCER1A (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of FCER1A mRNACTDPMID:22316170
Fcer1aMousebenzo[a]pyrene affects methylationISOFCER1A (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of FCER1A promoterCTDPMID:27901495
Fcer1aMousebenzo[a]pyrene decreases methylationISOFCER1A (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of FCER1A 5' UTRCTDPMID:27901495
Fcer1aMousebenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of FCER1A mRNACTDPMID:23735875
Fcer1aMousebenzo[a]pyrene multiple interactionsEXP 6480464AHR protein affects the reaction [Benzo(a)pyrene affects the expression of FCER1A mRNA]CTDPMID:22228805
Fcer1aMousebisphenol A decreases expressionISOFcer1a (Rattus norvegicus)6480464bisphenol A results in decreased expression of FCER1A mRNACTDPMID:25181051
Fcer1aMousebutyric acid decreases expressionISOFCER1A (Homo sapiens)6480464Butyric Acid results in decreased expression of FCER1A mRNACTDPMID:34581912
Fcer1aMouseCGP 52608 multiple interactionsISOFCER1A (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to FCER1A gene]CTDPMID:28238834
Fcer1aMousedisodium selenite increases expressionISOFCER1A (Homo sapiens)6480464Sodium Selenite results in increased expression of FCER1A mRNACTDPMID:18175754

1 to 20 of 43 rows

Biological Process
1 to 20 of 26 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMousecalcium-mediated signaling acts_upstream_ofIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousecell surface receptor signaling pathway involved_inIBAPANTHER:PTN002607979 more ...2290270 GO_CentralGO_REF:0000033
Fcer1aMousecell surface receptor signaling pathway acts_upstream_of_or_withinIMPMGI:23839822290270 PMID:8252632MGIPMID:8252632
Fcer1aMousecell surface receptor signaling pathway acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMouseeosinophil degranulation involved_inISOUniProtKB:P123192290270 GO_CentralGO_REF:0000119
Fcer1aMouseestablishment of localization in cell acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMouseFc-epsilon receptor signaling pathway involved_inIEAGO:00197672290270 GOCGO_REF:0000108
Fcer1aMouseimmunoglobulin mediated immune response involved_inIBAPANTHER:PTN004264250 more ...2290270 GO_CentralGO_REF:0000033
Fcer1aMouseleukotriene biosynthetic process acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousemast cell degranulation involved_inISOUniProtKB:P123192290270 GO_CentralGO_REF:0000119
Fcer1aMousemast cell degranulation acts_upstream_ofIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepeptidyl-tyrosine phosphorylation acts_upstream_ofIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of calcium-mediated signaling acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of granulocyte macrophage colony-stimulating factor production acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of interleukin-3 production acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of JUN kinase activity acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of MAP kinase activity acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of mast cell cytokine production acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of mast cell degranulation acts_upstream_of_or_withinIDA 2290270 PMID:9000133MGIPMID:9000133
Fcer1aMousepositive regulation of peptidyl-tyrosine phosphorylation acts_upstream_of_or_withinIDA 2290270 PMID:7506729 and PMID:9000133MGIPMID:7506729 and PMID:9000133
1 to 20 of 26 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMousecell surface located_inISOUniProtKB:P123192290270 GO_CentralGO_REF:0000119
Fcer1aMouseexternal side of plasma membrane is_active_inIBAPANTHER:PTN002607978 more ...2290270 GO_CentralGO_REF:0000033
Fcer1aMouseexternal side of plasma membrane located_inIDA 2290270 PMID:2527850 and PMID:9000133MGIPMID:2527850 and PMID:9000133
Fcer1aMousemembrane raft located_inTAS 2290270 PMID:12192036MGIPMID:12192036
Fcer1aMouseplasma membrane located_inISOUniProtKB:P123192290270 GO_CentralGO_REF:0000119
Fcer1aMouseplasma membrane located_inIDA 2290270 PMID:2527850MGIPMID:2527850

Molecular Function
1 to 9 of 9 rows

  
1 to 9 of 9 rows

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMouseFc epsilon receptor mediated signaling pathway  ISOFCER1A (Homo sapiens)10402751 SMPDBSMP:00358

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fcer1aMouseasthma pathway  IEA 6907045 KEGGmmu:05310
1 to 16 of 16 rows
1 to 16 of 16 rows

1 to 12 of 12 rows
#
Reference Title
Reference Citation
1. Mast cell-associated alveolar inflammation in patients with atopic uncontrolled asthma. Andersson CK, etal., J Allergy Clin Immunol. 2011 Mar 7.
2. Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Eddleston J, etal., Genomics 1999 Mar 1;56(2):149-59.
3. A cDNA presumptively coding for the alpha subunit of the receptor with high affinity for immunoglobulin E. Kinet JP, etal., Biochemistry 1987 Jul 28;26(15):4605-10.
4. FcepsilonRI levels and frequencies of peripheral blood dendritic cell populations in allergic rhinitis. Lundberg K, etal., Hum Immunol. 2010 Oct;71(10):931-3. Epub 2010 Jul 30.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
1 to 12 of 12 rows
1 to 10 of 13 rows
PMID:1301170   PMID:1386095   PMID:1693656   PMID:1839735   PMID:2527850   PMID:2531187   PMID:2574151   PMID:2591369   PMID:2971731   PMID:7506729   PMID:7607670   PMID:7607671  
PMID:7730612   PMID:7797269   PMID:7873878   PMID:8252632   PMID:8563167   PMID:8613143   PMID:8759751   PMID:9000133   PMID:9062348   PMID:9062349   PMID:9143687   PMID:9383291  
PMID:9586641   PMID:9933565   PMID:10079519   PMID:10920231   PMID:10970105   PMID:11136818   PMID:11431695   PMID:11839254   PMID:12165533   PMID:12192036   PMID:12466851   PMID:12477932  
PMID:12517940   PMID:13129935   PMID:15128831   PMID:15383560   PMID:15637135   PMID:15879091   PMID:15921521   PMID:15998803   PMID:16141072   PMID:16174756   PMID:16176929   PMID:16272347  
PMID:16444258   PMID:16493075   PMID:16627486   PMID:16709862   PMID:16818790   PMID:17273841   PMID:17277081   PMID:17371974   PMID:17767162   PMID:17881510   PMID:17954569   PMID:17982059  
PMID:17993265   PMID:18032707   PMID:18179824   PMID:18516038   PMID:18692472   PMID:18703499   PMID:18949059   PMID:19082920   PMID:19331714   PMID:19414806   PMID:19494508   PMID:19508371  
PMID:19705113   PMID:19748979   PMID:20042574   PMID:20173038   PMID:20371366   PMID:20591187   PMID:20829437   PMID:20870945   PMID:21212279   PMID:21248252   PMID:21267068   PMID:21349584  
PMID:21436586   PMID:21653832   PMID:21712025   PMID:21821913   PMID:21865342   PMID:21873635   PMID:21967768   PMID:22130676   PMID:22138510   PMID:22430736   PMID:22564682   PMID:22875843  
PMID:22908282   PMID:23150715   PMID:23630966   PMID:23752044   PMID:24166713   PMID:24166714   PMID:24210352   PMID:24210353   PMID:24262755   PMID:24361879   PMID:24523933   PMID:24610015  
PMID:24963147   PMID:25227985   PMID:25239131   PMID:25422497   PMID:25522877   PMID:25769611   PMID:25779634   PMID:25801306   PMID:25824821   PMID:26052071   PMID:26136426   PMID:26295369  
1 to 10 of 13 rows



Fcer1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,048,836 - 173,054,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,048,851 - 173,054,781 (-)EnsemblGRCm39 Ensembl
GRCm381173,221,269 - 173,227,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,221,284 - 173,227,214 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,151,402 - 175,157,360 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,057,959 - 175,063,889 (-)NCBIMGSCv36mm8
Celera1176,073,170 - 176,079,126 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
FCER1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,283,575 - 159,308,202 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,289,714 - 159,308,224 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,253,365 - 159,277,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,526,128 - 157,544,638 (+)NCBINCBI36Build 36hg18NCBI36
Build 341156,072,576 - 156,091,086NCBI
Celera1132,329,745 - 132,348,256 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1130,610,827 - 130,635,025 (+)NCBIHuRef
CHM1_11160,649,107 - 160,673,443 (+)NCBICHM1_1
T2T-CHM13v2.01158,420,606 - 158,445,236 (+)NCBIT2T-CHM13v2.0
Fcer1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,218,427 - 88,224,723 (-)NCBIGRCr8
mRatBN7.21385,686,099 - 85,692,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,686,092 - 85,692,351 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1388,184,100 - 88,190,371 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,584,404 - 89,590,675 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,769,081 - 86,775,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01391,727,253 - 91,737,106 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1391,730,925 - 91,737,053 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01396,245,261 - 96,251,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,429,982 - 89,436,507 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11389,618,865 - 89,625,338 (-)NCBI
Celera1385,289,763 - 85,295,958 (-)NCBICelera
RH 3.4 Map13566.1RGD
Cytogenetic Map13q24NCBI
Fcer1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546811,094,788 - 11,101,173 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546811,094,792 - 11,101,191 (+)NCBIChiLan1.0ChiLan1.0
FCER1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,545,371 - 90,569,859 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,282,600 - 90,307,090 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,655,230 - 134,660,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11138,439,921 - 138,458,258 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1138,439,921 - 138,458,258 (+)Ensemblpanpan1.1panPan2
FCER1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,683,478 - 22,688,842 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,683,477 - 22,690,763 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,695,550 - 22,700,839 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,806,067 - 22,811,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,806,065 - 22,811,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,570,794 - 22,576,081 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,105,066 - 23,110,355 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,556,483 - 23,561,775 (-)NCBIUU_Cfam_GSD_1.0
Fcer1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,547,639 - 5,553,180 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367401,201,370 - 1,206,871 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCER1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,118,879 - 91,125,437 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,118,867 - 91,125,448 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,069,615 - 99,075,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCER1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,635,316 - 4,640,787 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl204,635,328 - 4,640,590 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660383,775,204 - 3,780,592 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcer1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247942,002,928 - 2,008,940 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247942,003,031 - 2,008,930 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Fcer1a
245 total Variants

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:72
Interacting mature miRNAs:73
Transcripts:ENSMUST00000049706
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 120 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4141878Qrr1_mQTL rich region on chromosome 1 (mouse)Not determined170878743175320066Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301016Szs1_mseizure susceptibility 1 (mouse)Not determined1170878743174456436Mouse

1 to 10 of 120 rows
Fcer1a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381173,227,258 - 173,227,511UniSTSGRCm38
MGSCv371175,157,389 - 175,157,642UniSTSGRCm37
Celera1176,079,155 - 176,079,408UniSTS
Cytogenetic Map1H3UniSTS
cM Map194.2UniSTS







Ensembl Acc Id: ENSMUST00000049706   ⟹   ENSMUSP00000056882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,048,851 - 173,054,781 (-)Ensembl
GRCm38.p6 Ensembl1173,221,284 - 173,227,214 (-)Ensembl
Ensembl Acc Id: ENSMUST00000193017   ⟹   ENSMUSP00000141932
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1173,048,960 - 173,054,761 (-)Ensembl
GRCm38.p6 Ensembl1173,221,393 - 173,227,194 (-)Ensembl
RefSeq Acc Id: NM_010184   ⟹   NP_034314
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,048,838 - 173,054,796 (-)NCBI
GRCm381173,221,271 - 173,227,229 (-)NCBI
MGSCv371175,151,402 - 175,157,360 (-)RGD
Celera1176,073,170 - 176,079,126 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496655   ⟹   XP_006496718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391173,048,836 - 173,054,799 (-)NCBI
GRCm381173,221,269 - 173,227,232 (-)NCBI
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_034314 (Get FASTA)   NCBI Sequence Viewer  
  XP_006496718 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37600 (Get FASTA)   NCBI Sequence Viewer  
  AAI25456 (Get FASTA)   NCBI Sequence Viewer  
  AAI25458 (Get FASTA)   NCBI Sequence Viewer  
  EDL38996 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000056882
  ENSMUSP00000056882.6
GenBank Protein P20489 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_034314   ⟸   NM_010184
- Peptide Label: precursor
- UniProtKB: E9QLR4 (UniProtKB/Swiss-Prot),   P20489 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006496718   ⟸   XM_006496655
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000056882   ⟸   ENSMUST00000049706
Ensembl Acc Id: ENSMUSP00000141932   ⟸   ENSMUST00000193017
Ig-like

Name Modeler Protein Id AA Range Protein Structure
AF-P20489-F1-model_v2 AlphaFold P20489 1-250 view protein structure

RGD ID:6875790
Promoter ID:EPDNEW_M1346
Type:initiation region
Name:Fcer1a_1
Description:Mus musculus Fc receptor, IgE, high affinity I, alpha polypeptide, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381173,227,230 - 173,227,290EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000005339 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049706 ENTREZGENE
  ENSMUST00000049706.11 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_Fc_receptor UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
KEGG Report mmu:14125 UniProtKB/Swiss-Prot
MGD MGI:95494 ENTREZGENE
NCBI Gene 14125 ENTREZGENE
PANTHER HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR SUBUNIT ALPHA UniProtKB/Swiss-Prot
  IMMUNOGLOBULIN FC RECEPTOR UniProtKB/Swiss-Prot
Pfam Ig_2 UniProtKB/Swiss-Prot
PhenoGen Fcer1a PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt A0A0A6YXC5_MOUSE UniProtKB/TrEMBL
  E9QLR4 ENTREZGENE
  FCERA_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary E9QLR4 UniProtKB/Swiss-Prot
1 to 23 of 23 rows