Nvl (nuclear VCP-like) - Rat Genome Database

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Gene: Nvl (nuclear VCP-like) Mus musculus
Analyze
Symbol: Nvl
Name: nuclear VCP-like
RGD ID: 1322637
MGI Page MGI
Description: Predicted to enable ATP binding activity; ATP hydrolysis activity; and preribosome binding activity. Predicted to be involved in rRNA processing; regulation of protein localization to nucleolus; and ribosomal large subunit biogenesis. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of nuclear exosome (RNase complex) and telomerase holoenzyme complex. Predicted to be active in nucleus. Orthologous to human NVL (nuclear VCP like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200009I24Rik; nuclear valosin-containing protein-like; nuclear VCP-like protein; NVLp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,914,703 - 180,974,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,914,703 - 180,971,769 (-)EnsemblGRCm39 Ensembl
GRCm381181,087,138 - 181,144,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,087,138 - 181,144,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,023,554 - 183,074,288 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,930,098 - 182,980,832 (-)NCBIMGSCv36mm8
Celera1188,160,290 - 188,211,164 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12819125   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17967808   PMID:18799693   PMID:21267068   PMID:21589869   PMID:21677750   PMID:21873635   PMID:24457600   PMID:28190767   PMID:28378742   PMID:28416111   PMID:30457570   PMID:31040226  
PMID:32325033   PMID:32434143  


Genomics

Comparative Map Data
Nvl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,914,703 - 180,974,557 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,914,703 - 180,971,769 (-)EnsemblGRCm39 Ensembl
GRCm381181,087,138 - 181,144,214 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,087,138 - 181,144,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,023,554 - 183,074,288 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,930,098 - 182,980,832 (-)NCBIMGSCv36mm8
Celera1188,160,290 - 188,211,164 (-)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.53NCBI
NVL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381224,227,345 - 224,330,172 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1224,227,334 - 224,330,189 (-)EnsemblGRCh38hg38GRCh38
GRCh371224,415,047 - 224,517,874 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361222,481,659 - 222,584,495 (-)NCBINCBI36Build 36hg18NCBI36
Build 341220,721,771 - 220,824,607NCBI
Celera1197,605,972 - 197,708,808 (-)NCBICelera
Cytogenetic Map1q42.11NCBI
HuRef1194,934,993 - 195,038,171 (-)NCBIHuRef
CHM1_11225,687,528 - 225,790,385 (-)NCBICHM1_1
T2T-CHM13v2.01223,416,266 - 223,519,053 (-)NCBIT2T-CHM13v2.0
Nvl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,385,389 - 95,438,490 (-)NCBIGRCr8
mRatBN7.21392,851,023 - 92,906,749 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,853,650 - 92,906,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,358,969 - 95,411,370 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,758,872 - 96,811,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,934,464 - 93,986,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,410,026 - 99,468,783 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,410,026 - 99,468,778 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,407,045 - 104,465,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,862,759 - 96,917,215 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11397,051,898 - 97,105,918 (-)NCBI
Celera1392,394,917 - 92,447,334 (-)NCBICelera
Cytogenetic Map13q26NCBI
Nvl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,011,621 - 1,062,286 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,010,966 - 1,069,176 (+)NCBIChiLan1.0ChiLan1.0
NVL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2125,198,255 - 25,300,948 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1125,149,198 - 25,251,886 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01199,695,388 - 199,798,080 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11204,704,095 - 204,807,027 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1204,704,371 - 204,806,959 (-)Ensemblpanpan1.1panPan2
NVL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1740,041,692 - 40,131,984 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl740,041,394 - 40,131,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha739,523,642 - 39,614,138 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0739,876,221 - 39,966,969 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl739,876,247 - 39,966,968 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1739,717,305 - 39,807,555 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0739,724,584 - 39,815,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0739,993,455 - 40,083,964 (+)NCBIUU_Cfam_GSD_1.0
Nvl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934453,365,252 - 53,472,551 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365261,272,389 - 1,382,048 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365261,274,760 - 1,381,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NVL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1012,588,135 - 12,670,625 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11012,564,891 - 12,670,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NVL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1255,455,812 - 5,555,666 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl255,455,646 - 5,556,770 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660555,633,241 - 5,737,550 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nvl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248355,913,699 - 5,970,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248355,896,014 - 5,977,581 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nvl
2443 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:126
Interacting mature miRNAs:133
Transcripts:ENSMUST00000027797
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
10045887Cplaq13_mcircadian period of locomotor activity 13 (mouse)Not determined1172831765181400659Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
1300960Hpic2_mhaloperidol induced catalepsy 2 (mouse)Not determined1175468817181400659Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
14700784Syncq4_msynovial calcification QTL 4 (mouse)1180673565182085565Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_026171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC119911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY793394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000027797   ⟹   ENSMUSP00000027797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,914,703 - 180,971,769 (-)Ensembl
GRCm38.p6 Ensembl1181,087,138 - 181,144,204 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,919,217 - 180,921,333 (-)Ensembl
GRCm38.p6 Ensembl1181,091,652 - 181,093,768 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,923,547 - 180,932,711 (-)Ensembl
GRCm38.p6 Ensembl1181,095,982 - 181,105,146 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,963,719 - 180,966,247 (-)Ensembl
GRCm38.p6 Ensembl1181,136,154 - 181,138,682 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1180,920,824 - 180,923,090 (-)Ensembl
GRCm38.p6 Ensembl1181,093,259 - 181,095,525 (-)Ensembl
RefSeq Acc Id: NM_026171   ⟹   NP_080447
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,703 - 180,971,769 (-)NCBI
GRCm381181,087,138 - 181,144,204 (-)NCBI
MGSCv371183,023,554 - 183,074,288 (-)RGD
Celera1188,160,290 - 188,211,164 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496964   ⟹   XP_006497027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,777 (-)NCBI
GRCm381181,087,140 - 181,144,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238856   ⟹   XP_011237158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,777 (-)NCBI
GRCm381181,087,140 - 181,144,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238857   ⟹   XP_011237159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,763 (-)NCBI
GRCm381181,087,140 - 181,144,199 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242438   ⟹   XP_030098298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,764 (-)NCBI
GRCm381181,087,140 - 181,144,212 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153140   ⟹   XP_036009033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153141   ⟹   XP_036009034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,971,762 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946442
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,974,557 (-)NCBI
GRCm381181,087,140 - 181,144,213 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946443
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,974,557 (-)NCBI
GRCm381181,087,140 - 181,144,214 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934115
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,974,557 (-)NCBI
Sequence:
RefSeq Acc Id: XR_373614
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391180,914,705 - 180,974,557 (-)NCBI
GRCm381181,087,140 - 181,144,213 (-)NCBI
Sequence:
RefSeq Acc Id: NP_080447   ⟸   NM_026171
- UniProtKB: Q8BW27 (UniProtKB/Swiss-Prot),   Q3USC4 (UniProtKB/Swiss-Prot),   Q8K2B5 (UniProtKB/Swiss-Prot),   Q9DBY8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497027   ⟸   XM_006496964
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011237159   ⟸   XM_011238857
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011237158   ⟸   XM_011238856
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098298   ⟸   XM_030242438
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000027797   ⟸   ENSMUST00000027797
RefSeq Acc Id: XP_036009033   ⟸   XM_036153140
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036009034   ⟸   XM_036153141
- Peptide Label: isoform X3
Protein Domains
NVL2 nucleolin binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DBY8-F1-model_v2 AlphaFold Q9DBY8 1-855 view protein structure

Promoters
RGD ID:6875946
Promoter ID:EPDNEW_M1424
Type:initiation region
Name:Nvl_1
Description:Mus musculus nuclear VCP-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381181,144,157 - 181,144,217EPDNEW
RGD ID:6818194
Promoter ID:MM_KWN:3153
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026171,   UC007DXD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361183,074,144 - 183,074,644 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914709 AgrOrtholog
Ensembl Genes ENSMUSG00000026516 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027797 ENTREZGENE
  ENSMUST00000027797.9 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.2010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.8.60 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  ATPase_AAA_CS UniProtKB/Swiss-Prot
  NLV2_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NVL2_nucleolin-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:67459 UniProtKB/Swiss-Prot
MGD MGI:1914709 ENTREZGENE
NCBI Gene 67459 ENTREZGENE
PANTHER AAA-FAMILY ATPASE UniProtKB/Swiss-Prot
  NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE UniProtKB/Swiss-Prot
Pfam AAA UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  Nucleolin_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nvl PhenoGen
PROSITE AAA UniProtKB/Swiss-Prot
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt NVL_MOUSE UniProtKB/Swiss-Prot
  Q3USC4 ENTREZGENE
  Q8BW27 ENTREZGENE
  Q8K2B5 ENTREZGENE
  Q9CRW9_MOUSE UniProtKB/TrEMBL
  Q9DBY8 ENTREZGENE
UniProt Secondary Q3USC4 UniProtKB/Swiss-Prot
  Q8BW27 UniProtKB/Swiss-Prot
  Q8K2B5 UniProtKB/Swiss-Prot