Ncor1 (nuclear receptor co-repressor 1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ncor1 (nuclear receptor co-repressor 1) Mus musculus
Analyze
Symbol: Ncor1
Name: nuclear receptor co-repressor 1
RGD ID: 730891
MGI Page MGI
Description: Enables several functions, including histone deacetylase regulator activity; nuclear receptor binding activity; and transcription corepressor activity. Involved in several processes, including establishment of skin barrier; locomotor rhythm; and protein stabilization. Acts upstream of or within several processes, including hemopoiesis; regulation of gene expression; and regulation of intracellular signal transduction. Located in cytoplasm and nucleus. Part of transcription repressor complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human NCOR1 (nuclear receptor corepressor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730405M06Rik; A230020K14Rik; mKIAA1047; N-; N-CoR; N-CoR1; nuclear receptor corepressor 1; retinoid X receptor interacting protein 13; retinoid X receptor-interacting protein 13; RIP13; Rxr; Rxrip13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,207,132 - 62,348,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,207,252 - 62,349,367 (-)EnsemblGRCm39 Ensembl
GRCm381162,315,663 - 62,457,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,316,426 - 62,458,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,130,192 - 62,270,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,132,885 - 62,273,527 (-)NCBIMGSCv36mm8
Celera1169,235,609 - 69,376,529 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.08NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
afimoxifene  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-tocotrienol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
aspartame  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-tocotrienol  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calciol  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (ISO)
choline  (EXP)
cisplatin  (ISO)
clotrimazole  (EXP)
coumarin  (ISO)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (EXP,ISO)
cyproterone acetate  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (ISO)
delta-tocotrienol  (ISO)
dexamethasone  (ISO)
dichloromethane  (EXP)
dicrotophos  (ISO)
Dicyclohexyl phthalate  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
glafenine  (ISO)
glucose  (ISO)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lithocholic acid  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (EXP)
methylseleninic acid  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monosodium L-glutamate  (EXP)
N(4)-hydroxycytidine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nefazodone  (ISO)
nicotinamide  (EXP)
okadaic acid  (ISO)
ormeloxifene  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paricalcitol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (EXP,ISO)
PK-11195  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
rifampicin  (ISO)
sarin  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
tributylstannane  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
tungsten  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adipose tissue morphology  (IAGP)
abnormal aerobic fitness  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal gas homeostasis  (IAGP)
abnormal gastrocnemius morphology  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal hematocrit  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal quadriceps morphology  (IAGP)
abnormal response to novel object  (IAGP)
abnormal response/metabolism to endogenous compounds  (IAGP)
abnormal skeletal muscle fiber mitochondrial morphology  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal soleus morphology  (IAGP)
abnormal thyroxine level  (IAGP)
anemia  (IAGP)
arrested T cell differentiation  (IAGP)
decreased activity of thyroid gland  (IAGP)
decreased body weight  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased circulating LDL cholesterol level  (IAGP)
decreased circulating thyroxine level  (IAGP)
decreased circulating triiodothyronine level  (IAGP)
decreased embryo size  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased heart rate  (IAGP)
decreased hematocrit  (IAGP)
decreased liver glycogen level  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased respiratory quotient  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased susceptibility to induced hypothermia  (IAGP)
decreased total body fat amount  (IAGP)
decreased white fat cell size  (IAGP)
dilated third ventricle  (IAGP)
edema  (IAGP)
enhanced exercise endurance  (IAGP)
enhanced long-term object recognition memory  (IAGP)
hepatic steatosis  (IAGP)
increased basal metabolism  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating ketone body level  (IAGP)
increased energy expenditure  (IAGP)
increased food intake  (IAGP)
increased heart left ventricle weight  (IAGP)
increased heart weight  (IAGP)
increased insulin sensitivity  (IAGP)
increased locomotor activity  (IAGP)
increased nucleated erythrocyte cell number  (IAGP)
increased oxygen consumption  (IAGP)
increased skeletal muscle fiber diameter  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
pallor  (IAGP)
shortened circadian behavior period  (IAGP)
small liver  (IAGP)
small thalamus  (IAGP)
small thymus  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Aberrant interactions of transcriptional repressor proteins with the Huntington's disease gene product, huntingtin. Boutell JM, etal., Hum Mol Genet. 1999 Sep;8(9):1647-55.
2. Androgen receptor coregulators and their involvement in the development and progression of prostate cancer. Chmelar R, etal., Int J Cancer. 2007 Feb 15;120(4):719-33.
3. Role of estrogen receptor alpha transcriptional coregulators in tamoxifen resistance in breast cancer. Girault I, etal., Maturitas. 2006 Jul 20;54(4):342-51. Epub 2006 Jul 5.
4. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
5. Thyroid hormone exerts site-specific effects on SRC-1 and NCoR expression selectively in the neonatal rat brain. Iannacone EA, etal., Mol Cell Endocrinol. 2002 Jan 15;186(1):49-59.
6. The nuclear receptor corepressor has organizational effects within the developing amygdala on juvenile social play and anxiety-like behavior. Jessen HM, etal., Endocrinology. 2010 Mar;151(3):1212-20. Epub 2010 Jan 5.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Changes in gene expression of DOR and other thyroid hormone receptors in rat liver during acute-phase response. Malik IA, etal., Cell Tissue Res. 2010 Nov;342(2):261-72. doi: 10.1007/s00441-010-1067-4. Epub 2010 Oct 15.
9. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
10. MGDs mouse GO annotations MGD data from the GO Consortium
11. MGD IEA MGD IEA
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. A molecular mechanism underlying ovarian dysfunction of polycystic ovary syndrome: hyperandrogenism induces epigenetic alterations in the granulosa cells. Qu F, etal., J Mol Med (Berl). 2012 Feb 21.
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.
19. Glucocorticoid receptor cofactors as therapeutic targets. Simons SS Jr Curr Opin Pharmacol. 2010 Dec;10(6):613-9. Epub 2010 Aug 26.
20. Interactions of the mineralocorticoid receptor--within and without. Yang J and Fuller PJ, Mol Cell Endocrinol. 2012 Mar 24;350(2):196-205. doi: 10.1016/j.mce.2011.07.001. Epub 2011 Jul 18.
Additional References at PubMed
PMID:7566114   PMID:7760852   PMID:8889548   PMID:8961273   PMID:9139820   PMID:9139821   PMID:9637679   PMID:9702189   PMID:9774688   PMID:10049357   PMID:10349636   PMID:10512203  
PMID:10753524   PMID:10803578   PMID:10922068   PMID:10984530   PMID:11030619   PMID:11042159   PMID:11076861   PMID:11092755   PMID:11328825   PMID:11441023   PMID:11509652   PMID:11702949  
PMID:11891224   PMID:11903058   PMID:11997503   PMID:12007404   PMID:12130660   PMID:12150997   PMID:12410313   PMID:12465718   PMID:12477932   PMID:12520002   PMID:12590135   PMID:12904255  
PMID:12904583   PMID:14561088   PMID:14610273   PMID:14681479   PMID:14744261   PMID:14980219   PMID:14985122   PMID:15175761   PMID:15226823   PMID:15328020   PMID:15371360   PMID:15618518  
PMID:15681609   PMID:15695367   PMID:15741177   PMID:15782199   PMID:15840001   PMID:15852015   PMID:15870285   PMID:16030140   PMID:16127449   PMID:16141072   PMID:16141073   PMID:16216492  
PMID:16227606   PMID:16421255   PMID:16491076   PMID:16602821   PMID:16917504   PMID:17151600   PMID:17182846   PMID:17392792   PMID:17606624   PMID:17928865   PMID:17956988   PMID:17967808  
PMID:18006628   PMID:18206970   PMID:18287559   PMID:18799693   PMID:18829436   PMID:18986647   PMID:19037247   PMID:19052228   PMID:19147680   PMID:19299558   PMID:19389355   PMID:19595715  
PMID:19737349   PMID:19786558   PMID:20006618   PMID:20412781   PMID:20427468   PMID:20719946   PMID:21048966   PMID:21122108   PMID:21228185   PMID:21239618   PMID:21267068   PMID:21389087  
PMID:21677750   PMID:21873635   PMID:21987803   PMID:22078880   PMID:22078881   PMID:22253232   PMID:22294748   PMID:22684107   PMID:22878400   PMID:22891325   PMID:23028049   PMID:23292142  
PMID:23610395   PMID:23770565   PMID:23840792   PMID:23892456   PMID:24074869   PMID:24268577   PMID:24315104   PMID:24381310   PMID:24550004   PMID:24713658   PMID:24794873   PMID:24952961  
PMID:25182530   PMID:25269746   PMID:25421714   PMID:25998209   PMID:26166430   PMID:26712002   PMID:26712006   PMID:26859354   PMID:27068467   PMID:27506116   PMID:27646874   PMID:27733359  
PMID:27864380   PMID:28167773   PMID:28348241   PMID:28364022   PMID:28671696   PMID:28923959   PMID:28960380   PMID:29033129   PMID:29038463   PMID:29162920   PMID:29222328   PMID:29273766  
PMID:29343442   PMID:29531310   PMID:29660306   PMID:30254164   PMID:30664766   PMID:30804018   PMID:30952864   PMID:31404087   PMID:31408725   PMID:31522122   PMID:31529020   PMID:31532577  
PMID:31604693   PMID:31825833   PMID:32044398   PMID:32072640   PMID:32318068   PMID:32325033   PMID:32453730   PMID:32467224   PMID:32644192   PMID:32720575   PMID:32760002   PMID:33104749  
PMID:34390859   PMID:34709266   PMID:34857762   PMID:35040081   PMID:35081368   PMID:35439761   PMID:35983582   PMID:36238311   PMID:36316474   PMID:36565644   PMID:37059182   PMID:37524243  
PMID:37590294   PMID:37591884   PMID:37735473   PMID:38107517   PMID:38165941   PMID:38359551   PMID:39106294  


Genomics

Comparative Map Data
Ncor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,207,132 - 62,348,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,207,252 - 62,349,367 (-)EnsemblGRCm39 Ensembl
GRCm381162,315,663 - 62,457,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,316,426 - 62,458,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,130,192 - 62,270,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,132,885 - 62,273,527 (-)NCBIMGSCv36mm8
Celera1169,235,609 - 69,376,529 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.08NCBI
NCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,029,157 - 16,215,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,029,065 - 16,218,185 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,932,471 - 16,118,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,875,983 - 16,059,570 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,875,983 - 16,059,570NCBI
Celera1715,836,413 - 16,021,797 (-)NCBICelera
Cytogenetic Map17p12-p11.2NCBI
HuRef1715,800,450 - 15,985,911 (-)NCBIHuRef
CHM1_11715,943,234 - 16,128,660 (-)NCBICHM1_1
T2T-CHM13v2.01715,931,369 - 16,117,845 (-)NCBIT2T-CHM13v2.0
Ncor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,498,852 - 47,641,612 (-)NCBIGRCr8
mRatBN7.21046,999,536 - 47,142,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,703,300 - 51,844,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,193,851 - 51,335,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,697,258 - 46,838,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,629,121 - 48,772,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,629,121 - 48,772,890 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,417,490 - 48,559,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,481,110 - 48,628,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,495,233 - 48,511,932 (-)NCBI
Celera1046,245,514 - 46,388,593 (-)NCBICelera
Cytogenetic Map10q23NCBI
Ncor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,409,281 - 1,546,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,408,292 - 1,568,539 (-)NCBIChiLan1.0ChiLan1.0
NCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,418,767 - 56,606,360 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,230,404 - 61,417,984 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,934,452 - 35,121,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,362,694 - 110,416,423 (-)NCBIpanpan1.1PanPan1.1panPan2
NCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,687,530 - 39,837,003 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,687,543 - 39,836,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,833,877 - 39,983,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,797,954 - 39,946,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,797,926 - 39,946,735 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,769,594 - 39,919,058 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,714,886 - 39,864,318 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,906,752 - 40,055,598 (+)NCBIUU_Cfam_GSD_1.0
Ncor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,273,377 - 59,429,898 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821382,383 - 536,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821382,756 - 538,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,273,100 - 59,392,562 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,256,868 - 59,392,564 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,387,195 - 62,538,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,442,315 - 15,629,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,462,640 - 15,628,512 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,330,335 - 5,517,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,233,282 - 4,377,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,203,125 - 4,379,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncor1
4222 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4462
Count of miRNA genes:893
Interacting mature miRNAs:1258
Transcripts:ENSMUST00000018645, ENSMUST00000037575, ENSMUST00000069456, ENSMUST00000101066, ENSMUST00000101067, ENSMUST00000101068, ENSMUST00000124027, ENSMUST00000127471, ENSMUST00000131911, ENSMUST00000141447, ENSMUST00000151498, ENSMUST00000155486, ENSMUST00000155712, ENSMUST00000156740, ENSMUST00000159069, ENSMUST00000159224, ENSMUST00000159315, ENSMUST00000160171, ENSMUST00000161116, ENSMUST00000161281, ENSMUST00000161288, ENSMUST00000161432, ENSMUST00000161699, ENSMUST00000161767, ENSMUST00000162077, ENSMUST00000162236
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
RH128597  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,317,040 - 62,317,223UniSTSGRCm38
MGSCv371162,130,542 - 62,130,725UniSTSGRCm37
Celera1169,235,959 - 69,236,142UniSTS
Cytogenetic Map11B2UniSTS
22.MMHAP31FLH1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,394,743 - 62,394,939UniSTSGRCm38
MGSCv371162,208,245 - 62,208,441UniSTSGRCm37
Celera1169,313,626 - 69,313,822UniSTS
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11829.74UniSTS
Ncor1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B2UniSTS
cM MapUN UniSTS
cM Map11 UniSTS
UniSTS:236601  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,370,822 - 62,371,023UniSTSGRCm38
MGSCv371162,184,324 - 62,184,525UniSTSGRCm37
Celera1169,289,709 - 69,289,910UniSTS
Cytogenetic Map11B2UniSTS
RH126206  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,367,948 - 62,368,197UniSTSGRCm38
MGSCv371162,181,450 - 62,181,699UniSTSGRCm37
Celera1169,286,835 - 69,287,084UniSTS
Cytogenetic Map11B2UniSTS
Whitehead/MRC_RH11825.26UniSTS
UniSTS:224923  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,317,610 - 62,317,777UniSTSGRCm38
GRCm38X61,831,633 - 61,831,800UniSTSGRCm38
MGSCv37X59,084,808 - 59,084,975UniSTSGRCm37
MGSCv371162,131,112 - 62,131,279UniSTSGRCm37
Celera1169,236,529 - 69,236,696UniSTS
CeleraX48,261,825 - 48,261,992UniSTS
Cytogenetic MapXA6UniSTS
Cytogenetic Map11B2UniSTS
UniSTS:225080  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381162,317,807 - 62,317,994UniSTSGRCm38
GRCm38X61,831,424 - 61,831,611UniSTSGRCm38
MGSCv37X59,084,599 - 59,084,786UniSTSGRCm37
MGSCv371162,131,309 - 62,131,496UniSTSGRCm37
Celera1169,236,726 - 69,236,913UniSTS
CeleraX48,261,616 - 48,261,803UniSTS
Cytogenetic MapXA6UniSTS
Cytogenetic Map11B2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB140234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB673294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU504661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L78294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U22016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U35312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000018645   ⟹   ENSMUSP00000018645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,207,252 - 62,348,158 (-)Ensembl
GRCm38.p6 Ensembl1162,316,426 - 62,457,332 (-)Ensembl
Ensembl Acc Id: ENSMUST00000037575   ⟹   ENSMUSP00000038900
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,208,623 - 62,250,617 (-)Ensembl
GRCm38.p6 Ensembl1162,317,797 - 62,359,791 (-)Ensembl
Ensembl Acc Id: ENSMUST00000069456   ⟹   ENSMUSP00000068974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,292,209 - 62,348,149 (-)Ensembl
GRCm38.p6 Ensembl1162,401,383 - 62,457,323 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101066   ⟹   ENSMUSP00000098627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,207,252 - 62,329,341 (-)Ensembl
GRCm38.p6 Ensembl1162,316,426 - 62,438,515 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101067   ⟹   ENSMUSP00000098628
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,208,623 - 62,329,307 (-)Ensembl
GRCm38.p6 Ensembl1162,317,797 - 62,438,481 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101068
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,257,770 - 62,329,341 (-)Ensembl
GRCm38.p6 Ensembl1162,366,944 - 62,438,515 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,286,012 - 62,292,376 (-)Ensembl
GRCm38.p6 Ensembl1162,395,186 - 62,401,550 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127471   ⟹   ENSMUSP00000121806
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,264,212 - 62,348,632 (-)Ensembl
GRCm38.p6 Ensembl1162,373,386 - 62,457,806 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,216,088 - 62,220,870 (-)Ensembl
GRCm38.p6 Ensembl1162,325,262 - 62,330,044 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141447   ⟹   ENSMUSP00000123822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,310,556 - 62,349,367 (-)Ensembl
GRCm38.p6 Ensembl1162,419,730 - 62,458,541 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151498   ⟹   ENSMUSP00000125317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,235,611 - 62,283,485 (-)Ensembl
GRCm38.p6 Ensembl1162,344,785 - 62,392,659 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155486   ⟹   ENSMUSP00000122647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,275,583 - 62,329,341 (-)Ensembl
GRCm38.p6 Ensembl1162,384,757 - 62,438,515 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155712   ⟹   ENSMUSP00000122654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,207,516 - 62,269,343 (-)Ensembl
GRCm38.p6 Ensembl1162,316,690 - 62,378,517 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156740   ⟹   ENSMUSP00000125458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,208,623 - 62,249,841 (-)Ensembl
GRCm38.p6 Ensembl1162,317,797 - 62,359,015 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,233,847 - 62,242,216 (-)Ensembl
GRCm38.p6 Ensembl1162,343,021 - 62,351,390 (-)Ensembl
Ensembl Acc Id: ENSMUST00000159315   ⟹   ENSMUSP00000124175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,208,427 - 62,212,047 (-)Ensembl
GRCm38.p6 Ensembl1162,317,601 - 62,321,221 (-)Ensembl
Ensembl Acc Id: ENSMUST00000160171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,282,875 - 62,286,018 (-)Ensembl
GRCm38.p6 Ensembl1162,392,049 - 62,395,192 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,244,732 - 62,260,127 (-)Ensembl
GRCm38.p6 Ensembl1162,353,906 - 62,369,301 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,217,957 - 62,221,769 (-)Ensembl
GRCm38.p6 Ensembl1162,327,131 - 62,330,943 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161288   ⟹   ENSMUSP00000124045
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,264,145 - 62,274,031 (-)Ensembl
GRCm38.p6 Ensembl1162,373,319 - 62,383,205 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,231,281 - 62,235,727 (-)Ensembl
GRCm38.p6 Ensembl1162,340,455 - 62,344,901 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161699   ⟹   ENSMUSP00000124120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,264,190 - 62,275,669 (-)Ensembl
GRCm38.p6 Ensembl1162,373,364 - 62,384,843 (-)Ensembl
Ensembl Acc Id: ENSMUST00000161767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,216,338 - 62,220,994 (-)Ensembl
GRCm38.p6 Ensembl1162,325,512 - 62,330,168 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,267,442 - 62,274,089 (-)Ensembl
GRCm38.p6 Ensembl1162,376,616 - 62,383,263 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162236   ⟹   ENSMUSP00000124698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1162,264,210 - 62,274,180 (-)Ensembl
GRCm38.p6 Ensembl1162,373,384 - 62,383,354 (-)Ensembl
RefSeq Acc Id: NM_001252313   ⟹   NP_001239242
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,252 - 62,329,341 (-)NCBI
GRCm381162,316,426 - 62,438,515 (-)NCBI
Celera1169,235,347 - 69,376,529 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011308   ⟹   NP_035438
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,252 - 62,329,341 (-)NCBI
GRCm381162,316,426 - 62,438,515 (-)NCBI
MGSCv371162,130,192 - 62,270,834 (-)RGD
Celera1169,235,347 - 69,376,529 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177229   ⟹   NP_796203
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,292,203 - 62,348,158 (-)NCBI
GRCm381162,401,377 - 62,457,332 (-)NCBI
Celera1169,235,347 - 69,376,529 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532613   ⟹   XP_006532676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532614   ⟹   XP_006532677
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532616   ⟹   XP_006532679
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532618   ⟹   XP_006532681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532619   ⟹   XP_006532682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532621   ⟹   XP_006532684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532623   ⟹   XP_006532686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532624   ⟹   XP_006532687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
GRCm381162,316,989 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532626   ⟹   XP_006532689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532628   ⟹   XP_006532691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
GRCm381162,315,663 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314356   ⟹   XP_017169845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,315,663 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314359   ⟹   XP_017169848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314361   ⟹   XP_017169850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314362   ⟹   XP_017169851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314367   ⟹   XP_017169856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,315,663 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314368   ⟹   XP_017169857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,316,994 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314369   ⟹   XP_017169858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,315,663 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314370   ⟹   XP_017169859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314372   ⟹   XP_017169861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314373   ⟹   XP_017169862
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314374   ⟹   XP_017169863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314375   ⟹   XP_017169864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314377   ⟹   XP_017169866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314378   ⟹   XP_017169867
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314384   ⟹   XP_017169873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314385   ⟹   XP_017169874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314388   ⟹   XP_017169877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,315,663 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245708   ⟹   XP_030101568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245710   ⟹   XP_030101570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245711   ⟹   XP_030101571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245713   ⟹   XP_030101573
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,316,994 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245714   ⟹   XP_030101574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245715   ⟹   XP_030101575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245717   ⟹   XP_030101577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
GRCm381162,317,003 - 62,457,414 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156462   ⟹   XP_036012355
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156463   ⟹   XP_036012356
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156464   ⟹   XP_036012357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156465   ⟹   XP_036012358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156466   ⟹   XP_036012359
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156467   ⟹   XP_036012360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156468   ⟹   XP_036012361
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156469   ⟹   XP_036012362
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156470   ⟹   XP_036012363
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156471   ⟹   XP_036012364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156472   ⟹   XP_036012365
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156473   ⟹   XP_036012366
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156474   ⟹   XP_036012367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156475   ⟹   XP_036012368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156476   ⟹   XP_036012369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156477   ⟹   XP_036012370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391162,207,132 - 62,348,200 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001239242 (Get FASTA)   NCBI Sequence Viewer  
  NP_035438 (Get FASTA)   NCBI Sequence Viewer  
  NP_796203 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532676 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532677 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532679 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532681 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532682 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532684 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532686 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532687 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532689 (Get FASTA)   NCBI Sequence Viewer  
  XP_006532691 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169845 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169848 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169850 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169851 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169856 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169857 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169858 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169859 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169861 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169862 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169863 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169864 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169866 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169867 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169873 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169874 (Get FASTA)   NCBI Sequence Viewer  
  XP_017169877 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101568 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101570 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101571 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101573 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101574 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101575 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101577 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012355 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012356 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012357 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012358 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012359 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012360 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012361 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012362 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012363 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012364 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012365 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012366 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012367 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012368 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012369 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012370 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB17125 (Get FASTA)   NCBI Sequence Viewer  
  AAC52168 (Get FASTA)   NCBI Sequence Viewer  
  AAH26623 (Get FASTA)   NCBI Sequence Viewer  
  AAH29627 (Get FASTA)   NCBI Sequence Viewer  
  AAH86657 (Get FASTA)   NCBI Sequence Viewer  
  AAL40135 (Get FASTA)   NCBI Sequence Viewer  
  BAB29007 (Get FASTA)   NCBI Sequence Viewer  
  BAC36792 (Get FASTA)   NCBI Sequence Viewer  
  BAC41465 (Get FASTA)   NCBI Sequence Viewer  
  BAE22771 (Get FASTA)   NCBI Sequence Viewer  
  BAE23439 (Get FASTA)   NCBI Sequence Viewer  
  BAE23465 (Get FASTA)   NCBI Sequence Viewer  
  EDL10341 (Get FASTA)   NCBI Sequence Viewer  
  EDL10342 (Get FASTA)   NCBI Sequence Viewer  
  EDL10343 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000018645
  ENSMUSP00000018645.7
  ENSMUSP00000038900.9
  ENSMUSP00000068974
  ENSMUSP00000068974.5
  ENSMUSP00000098627
  ENSMUSP00000098627.4
  ENSMUSP00000098628
  ENSMUSP00000098628.4
  ENSMUSP00000121806.3
  ENSMUSP00000122647.2
  ENSMUSP00000122654.3
  ENSMUSP00000123822.2
  ENSMUSP00000124045.2
  ENSMUSP00000124120.2
  ENSMUSP00000124175.2
  ENSMUSP00000124698.2
  ENSMUSP00000125317.2
  ENSMUSP00000125458.2
GenBank Protein Q60974 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035438   ⟸   NM_011308
- Peptide Label: isoform 2
- UniProtKB: Q5PRE9 (UniProtKB/TrEMBL),   E9Q2B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239242   ⟸   NM_001252313
- Peptide Label: isoform 1
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot),   Q5RIM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_796203   ⟸   NM_177229
- Peptide Label: isoform 3
- UniProtKB: Q8BK32 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532687   ⟸   XM_006532624
- Peptide Label: isoform X30
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot),   Q5RIM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532691   ⟸   XM_006532628
- Peptide Label: isoform X50
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532686   ⟸   XM_006532623
- Peptide Label: isoform X29
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532682   ⟸   XM_006532619
- Peptide Label: isoform X9
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532681   ⟸   XM_006532618
- Peptide Label: isoform X7
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532676   ⟸   XM_006532613
- Peptide Label: isoform X2
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532684   ⟸   XM_006532621
- Peptide Label: isoform X15
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532679   ⟸   XM_006532616
- Peptide Label: isoform X4
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532689   ⟸   XM_006532626
- Peptide Label: isoform X36
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532677   ⟸   XM_006532614
- Peptide Label: isoform X3
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169858   ⟸   XM_017314369
- Peptide Label: isoform X13
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169877   ⟸   XM_017314388
- Peptide Label: isoform X41
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169856   ⟸   XM_017314367
- Peptide Label: isoform X11
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169845   ⟸   XM_017314356
- Peptide Label: isoform X1
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169857   ⟸   XM_017314368
- Peptide Label: isoform X12
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169851   ⟸   XM_017314362
- Peptide Label: isoform X8
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169867   ⟸   XM_017314378
- Peptide Label: isoform X26
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169863   ⟸   XM_017314374
- Peptide Label: isoform X20
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169866   ⟸   XM_017314377
- Peptide Label: isoform X23
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169850   ⟸   XM_017314361
- Peptide Label: isoform X6
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169861   ⟸   XM_017314372
- Peptide Label: isoform X17
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169864   ⟸   XM_017314375
- Peptide Label: isoform X22
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169862   ⟸   XM_017314373
- Peptide Label: isoform X19
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169859   ⟸   XM_017314370
- Peptide Label: isoform X14
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169874   ⟸   XM_017314385
- Peptide Label: isoform X37
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169848   ⟸   XM_017314359
- Peptide Label: isoform X5
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017169873   ⟸   XM_017314384
- Peptide Label: isoform X34
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030101573   ⟸   XM_030245713
- Peptide Label: isoform X32
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101570   ⟸   XM_030245710
- Peptide Label: isoform X24
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101575   ⟸   XM_030245715
- Peptide Label: isoform X35
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101571   ⟸   XM_030245711
- Peptide Label: isoform X25
- UniProtKB: Q60812 (UniProtKB/Swiss-Prot),   Q60974 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101574   ⟸   XM_030245714
- Peptide Label: isoform X33
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101568   ⟸   XM_030245708
- Peptide Label: isoform X16
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101577   ⟸   XM_030245717
- Peptide Label: isoform X39
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000124175   ⟸   ENSMUST00000159315
Ensembl Acc Id: ENSMUSP00000121806   ⟸   ENSMUST00000127471
Ensembl Acc Id: ENSMUSP00000125317   ⟸   ENSMUST00000151498
Ensembl Acc Id: ENSMUSP00000038900   ⟸   ENSMUST00000037575
Ensembl Acc Id: ENSMUSP00000098628   ⟸   ENSMUST00000101067
Ensembl Acc Id: ENSMUSP00000098627   ⟸   ENSMUST00000101066
Ensembl Acc Id: ENSMUSP00000068974   ⟸   ENSMUST00000069456
Ensembl Acc Id: ENSMUSP00000124698   ⟸   ENSMUST00000162236
Ensembl Acc Id: ENSMUSP00000125458   ⟸   ENSMUST00000156740
Ensembl Acc Id: ENSMUSP00000124045   ⟸   ENSMUST00000161288
Ensembl Acc Id: ENSMUSP00000124120   ⟸   ENSMUST00000161699
Ensembl Acc Id: ENSMUSP00000122647   ⟸   ENSMUST00000155486
Ensembl Acc Id: ENSMUSP00000122654   ⟸   ENSMUST00000155712
Ensembl Acc Id: ENSMUSP00000018645   ⟸   ENSMUST00000018645
Ensembl Acc Id: ENSMUSP00000123822   ⟸   ENSMUST00000141447
RefSeq Acc Id: XP_036012361   ⟸   XM_036156468
- Peptide Label: isoform X38
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012370   ⟸   XM_036156477
- Peptide Label: isoform X49
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012369   ⟸   XM_036156476
- Peptide Label: isoform X48
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012363   ⟸   XM_036156470
- Peptide Label: isoform X42
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012362   ⟸   XM_036156469
- Peptide Label: isoform X40
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012359   ⟸   XM_036156466
- Peptide Label: isoform X28
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012367   ⟸   XM_036156474
- Peptide Label: isoform X46
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012366   ⟸   XM_036156473
- Peptide Label: isoform X45
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012358   ⟸   XM_036156465
- Peptide Label: isoform X27
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012364   ⟸   XM_036156471
- Peptide Label: isoform X43
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012360   ⟸   XM_036156467
- Peptide Label: isoform X31
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012356   ⟸   XM_036156463
- Peptide Label: isoform X18
- UniProtKB: E9Q2B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012357   ⟸   XM_036156464
- Peptide Label: isoform X21
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012365   ⟸   XM_036156472
- Peptide Label: isoform X44
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012368   ⟸   XM_036156475
- Peptide Label: isoform X47
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036012355   ⟸   XM_036156462
- Peptide Label: isoform X10
- UniProtKB: Q60974 (UniProtKB/Swiss-Prot),   Q60812 (UniProtKB/Swiss-Prot)
Protein Domains
HTH myb-type   Myb-like   N-CoR GPS2-interacting   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q60974-F1-model_v2 AlphaFold Q60974 1-2453 view protein structure

Promoters
RGD ID:6821405
Promoter ID:MM_KWN:7814
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007JIU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361162,172,991 - 62,173,491 (-)MPROMDB
RGD ID:6846862
Promoter ID:MM_ACW:7706
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:NCOR1.HSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361162,186,469 - 62,186,969 (-)MPROMDB
RGD ID:6821550
Promoter ID:MM_KWN:7822
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101066,   ENSMUST00000101069,   ENSMUST00000108708,   NM_011308,   OTTMUST00000013021,   OTTMUST00000013024,   OTTMUST00000013037,   OTTMUST00000013038,   OTTMUST00000013039,   UC007JJA.1,   UC007JJB.1,   UC007JJD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361162,270,146 - 62,272,137 (+)MPROMDB
RGD ID:6821404
Promoter ID:MM_KWN:7823
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4
Transcripts:OTTMUST00000013032
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361162,271,756 - 62,272,256 (-)MPROMDB
RGD ID:8674968
Promoter ID:EPDNEW_M15514
Type:initiation region
Name:Ncor1_2
Description:Mus musculus nuclear receptor co-repressor 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15515  EPDNEW_M15516  EPDNEW_M15517  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,392,588 - 62,392,648EPDNEW
RGD ID:8674970
Promoter ID:EPDNEW_M15515
Type:single initiation site
Name:Ncor1_3
Description:Mus musculus nuclear receptor co-repressor 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15514  EPDNEW_M15516  EPDNEW_M15517  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,441,674 - 62,441,734EPDNEW
RGD ID:8674972
Promoter ID:EPDNEW_M15516
Type:multiple initiation site
Name:Ncor1_1
Description:Mus musculus nuclear receptor co-repressor 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15514  EPDNEW_M15515  EPDNEW_M15517  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,457,312 - 62,457,372EPDNEW
RGD ID:8674974
Promoter ID:EPDNEW_M15517
Type:initiation region
Name:Ncor1_4
Description:Mus musculus nuclear receptor co-repressor 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15514  EPDNEW_M15515  EPDNEW_M15516  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381162,457,813 - 62,457,873EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1349717 AgrOrtholog
Ensembl Genes ENSMUSG00000018501 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000018645 ENTREZGENE
  ENSMUST00000018645.13 UniProtKB/TrEMBL
  ENSMUST00000037575.15 UniProtKB/TrEMBL
  ENSMUST00000069456 ENTREZGENE
  ENSMUST00000069456.11 UniProtKB/TrEMBL
  ENSMUST00000101066 ENTREZGENE
  ENSMUST00000101066.10 UniProtKB/TrEMBL
  ENSMUST00000101067 ENTREZGENE
  ENSMUST00000101067.10 UniProtKB/TrEMBL
  ENSMUST00000127471.9 UniProtKB/TrEMBL
  ENSMUST00000141447.2 UniProtKB/TrEMBL
  ENSMUST00000151498.9 UniProtKB/TrEMBL
  ENSMUST00000155486.8 UniProtKB/TrEMBL
  ENSMUST00000155712.9 UniProtKB/TrEMBL
  ENSMUST00000156740.9 UniProtKB/TrEMBL
  ENSMUST00000159315.2 UniProtKB/TrEMBL
  ENSMUST00000161288.8 UniProtKB/TrEMBL
  ENSMUST00000161699.8 UniProtKB/TrEMBL
  ENSMUST00000162236.8 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.430 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.1880 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myb_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-CoR_corepressor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-CoR_GPS2_interact UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20185 UniProtKB/TrEMBL
MGD MGI:1349717 ENTREZGENE
NCBI Gene 20185 ENTREZGENE
PANTHER NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR RECEPTOR COREPRESSOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GPS2_interact UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ncor1 PhenoGen
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CYX5_MOUSE UniProtKB/TrEMBL
  E9Q2B2 ENTREZGENE, UniProtKB/TrEMBL
  E9Q8K6_MOUSE UniProtKB/TrEMBL
  E9Q9Y2_MOUSE UniProtKB/TrEMBL
  F6SFD2_MOUSE UniProtKB/TrEMBL
  F6TRR6_MOUSE UniProtKB/TrEMBL
  F6TWR1_MOUSE UniProtKB/TrEMBL
  F6U338_MOUSE UniProtKB/TrEMBL
  F7C134_MOUSE UniProtKB/TrEMBL
  NCOR1_MOUSE UniProtKB/Swiss-Prot
  Q05C35_MOUSE UniProtKB/TrEMBL
  Q05CF0_MOUSE UniProtKB/TrEMBL
  Q3UV08_MOUSE UniProtKB/TrEMBL
  Q3UV34_MOUSE UniProtKB/TrEMBL
  Q3UWZ3_MOUSE UniProtKB/TrEMBL
  Q5PRE9 ENTREZGENE, UniProtKB/TrEMBL
  Q5RIM6 ENTREZGENE, UniProtKB/TrEMBL
  Q5RIN0_MOUSE UniProtKB/TrEMBL
  Q60812 ENTREZGENE
  Q60974 ENTREZGENE
  Q8BK32 ENTREZGENE, UniProtKB/TrEMBL
  Q8CHB6_MOUSE UniProtKB/TrEMBL
  Q8VDE8_MOUSE UniProtKB/TrEMBL
  Q9CUV3_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q60812 UniProtKB/Swiss-Prot