Ncor1 (nuclear receptor corepressor 1) - Rat Genome Database

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Gene: Ncor1 (nuclear receptor corepressor 1) Chinchilla lanigera
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Symbol: Ncor1
Name: nuclear receptor corepressor 1
RGD ID: 9038333
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); anxiety disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,409,281 - 1,546,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,408,292 - 1,568,539 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ncor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,409,281 - 1,546,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,408,292 - 1,568,539 (-)NCBIChiLan1.0ChiLan1.0
NCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,029,157 - 16,215,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,029,065 - 16,218,185 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,932,471 - 16,118,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,875,983 - 16,059,570 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,875,983 - 16,059,570NCBI
Celera1715,836,413 - 16,021,797 (-)NCBICelera
Cytogenetic Map17p12-p11.2NCBI
HuRef1715,800,450 - 15,985,911 (-)NCBIHuRef
CHM1_11715,943,234 - 16,128,660 (-)NCBICHM1_1
T2T-CHM13v2.01715,931,369 - 16,117,845 (-)NCBIT2T-CHM13v2.0
Ncor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,207,132 - 62,348,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,207,252 - 62,349,367 (-)EnsemblGRCm39 Ensembl
GRCm381162,315,663 - 62,457,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,316,426 - 62,458,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,130,192 - 62,270,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,132,885 - 62,273,527 (-)NCBIMGSCv36mm8
Celera1169,235,609 - 69,376,529 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.08NCBI
Ncor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,498,852 - 47,641,612 (-)NCBIGRCr8
mRatBN7.21046,999,536 - 47,142,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,703,300 - 51,844,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,193,851 - 51,335,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,697,258 - 46,838,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,629,121 - 48,772,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,629,121 - 48,772,890 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,417,490 - 48,559,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,481,110 - 48,628,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,495,233 - 48,511,932 (-)NCBI
Celera1046,245,514 - 46,388,593 (-)NCBICelera
Cytogenetic Map10q24NCBI
NCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,418,767 - 56,606,360 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,230,404 - 61,417,984 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,934,452 - 35,121,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,362,694 - 110,416,423 (-)NCBIpanpan1.1PanPan1.1panPan2
NCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,687,530 - 39,837,003 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,687,543 - 39,836,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,833,877 - 39,983,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,797,954 - 39,946,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,797,926 - 39,946,735 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,769,594 - 39,919,058 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,714,886 - 39,864,318 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,906,752 - 40,055,598 (+)NCBIUU_Cfam_GSD_1.0
Ncor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,273,377 - 59,429,898 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821382,383 - 536,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821382,756 - 538,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,273,100 - 59,392,562 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,256,868 - 59,392,564 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,387,195 - 62,538,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,442,315 - 15,629,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,462,640 - 15,628,512 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,330,335 - 5,517,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,233,282 - 4,377,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,203,125 - 4,379,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000025502   ⟹   ENSCLAP00000025256
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554671,409,281 - 1,546,783 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000025503   ⟹   ENSCLAP00000025257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554671,438,345 - 1,488,969 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000025504   ⟹   ENSCLAP00000025258
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554671,507,223 - 1,546,842 (-)Ensembl
RefSeq Acc Id: XM_013522047   ⟹   XP_013377501
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554671,408,292 - 1,568,539 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377501 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025256
  ENSCLAP00000025256.1
  ENSCLAP00000025257.1
  ENSCLAP00000025258.1
RefSeq Acc Id: XP_013377501   ⟸   XM_013522047
- UniProtKB: A0A8C2YUZ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000025258   ⟸   ENSCLAT00000025504
Ensembl Acc Id: ENSCLAP00000025257   ⟸   ENSCLAT00000025503
Ensembl Acc Id: ENSCLAP00000025256   ⟸   ENSCLAT00000025502
Protein Domains
HTH myb-type   Myb-like   N-CoR GPS2-interacting   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017349 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025502 ENTREZGENE
  ENSCLAT00000025502.1 UniProtKB/TrEMBL
  ENSCLAT00000025503.1 UniProtKB/TrEMBL
  ENSCLAT00000025504.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.430 UniProtKB/TrEMBL
  1.20.58.1880 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  N-CoR_corepressor UniProtKB/TrEMBL
  N-CoR_GPS2_interact UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
NCBI Gene Ncor1 ENTREZGENE
PANTHER NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR UniProtKB/TrEMBL
  NUCLEAR RECEPTOR COREPRESSOR 1 UniProtKB/TrEMBL
Pfam GPS2_interact UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2W503_CHILA UniProtKB/TrEMBL
  A0A8C2WDD5_CHILA UniProtKB/TrEMBL
  A0A8C2YUZ2 ENTREZGENE, UniProtKB/TrEMBL