Bcl11a (BCL11 transcription factor A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Bcl11a (BCL11 transcription factor A) Mus musculus
Analyze
Symbol: Bcl11a
Name: BCL11 transcription factor A (Ensembl:B cell CLL/lymphoma 11A (zinc finger protein))
RGD ID: 1320528
MGI Page MGI
Description: Enables transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II and protein sumoylation. Acts upstream of or within B cell differentiation; T cell differentiation; and negative regulation of gene expression. Located in nuclear body. Part of SWI/SNF complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; sensory organ; and skin. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BCL11 transcription factor A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810047E18Rik; B cell CLL/lymphoma 11A (zinc finger protein); B-cell CLL/lymphoma 11A; B-cell CLL/lymphoma 11A (zinc finger protein); B-cell lymphoma/leukemia 11A; BCL-11A; COUP-TF interacting protein 1; COUP-TF-interacting protein 1; CTI; Ctip1; D930021L15Rik; ecotropic viral integration site 9 protein; Ev; Evi; EVI-9; Evi9; Evi9a; Evi9b; Evi9c; mKIAA1809; myeloid leukemia
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391124,026,498 - 24,123,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1124,028,056 - 24,124,123 (+)EnsemblGRCm39 Ensembl
GRCm381124,076,564 - 24,173,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1124,078,056 - 24,174,123 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,978,056 - 24,073,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,978,117 - 24,073,194 (+)NCBIMGSCv36mm8
Celera1126,200,322 - 26,297,352 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-methoxyethanol  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
butanal  (ISO)
carbon nanotube  (EXP)
casticin  (EXP)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (EXP)
chrysene  (EXP)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
D-glucose  (EXP)
dichloroacetic acid  (EXP)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
fructose  (EXP)
fulvestrant  (ISO)
geraniol  (ISO)
glucose  (EXP)
glyphosate  (EXP)
hydroquinone  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
maneb  (EXP)
mercury dibromide  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
progesterone  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamibarotene  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
tunicamycin  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nuclear body  (IDA)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,ISO)
paraspeckles  (ISO)
postsynapse  (ISO)
SWI/SNF complex  (IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axon morphology  (IAGP)
abnormal common lymphocyte progenitor cell morphology  (IAGP)
abnormal dendritic cell differentiation  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal hematopoietic stem cell physiology  (IAGP)
abnormal hemoglobin content  (IAGP)
abnormal immune system morphology  (IAGP)
abnormal immunoglobulin heavy chain V(D)J recombination  (IAGP)
abnormal neurite morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal spinal cord dorsal horn morphology  (IAGP)
abnormal T cell differentiation  (IAGP)
absent B cells  (IAGP)
absent CD4-positive, alpha-beta T cells  (IAGP)
absent lymphocyte  (IAGP)
anemia  (IAGP)
decreased B cell number  (IAGP)
decreased circulating interferon-alpha level  (IAGP)
decreased dendritic cell number  (IAGP)
decreased DN2 thymocyte number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased hematocrit  (IAGP)
decreased hematopoietic stem cell number  (IAGP)
decreased hemoglobin content  (IAGP)
decreased immature B cell number  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased mean corpuscular hemoglobin  (IAGP)
decreased mean corpuscular volume  (IAGP)
decreased plasmacytoid dendritic cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased T cell number  (IAGP)
increased B cell apoptosis  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased circulating erythropoietin level  (IAGP)
increased double-negative T cell number  (IAGP)
increased gamma-delta T cell number  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
polychromatophilia  (IAGP)
reticulocytosis  (IAGP)
small thymus  (IAGP)
thymus hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Genetic Modifiers in beta-Thalassemia Intermedia: A Study on 102 Iraqi Arab Patients. Al-Allawi NA, etal., Genet Test Mol Biomarkers. 2015 May;19(5):242-7. doi: 10.1089/gtmb.2014.0310. Epub 2015 Mar 9.
2. BCL11A deletions result in fetal hemoglobin persistence and neurodevelopmental alterations. Basak A, etal., J Clin Invest. 2015 Jun;125(6):2363-8. doi: 10.1172/JCI81163. Epub 2015 May 4.
3. Molecular mechanism of yisui shengxue granule, a complex chinese medicine, on thalassemia patients suffering from hemolysis and anemia of erythrocytes. Chu NL, etal., Evid Based Complement Alternat Med. 2014;2014:213782. doi: 10.1155/2014/213782. Epub 2014 Dec 10.
4. Synaptic, transcriptional and chromatin genes disrupted in autism. De Rubeis S, etal., Nature. 2014 Nov 13;515(7526):209-15. doi: 10.1038/nature13772. Epub 2014 Oct 29.
5. Hydroxycarbamide alters erythroid gene expression in children with sickle cell anaemia. Flanagan JM, etal., Br J Haematol. 2012 Apr;157(2):240-8. doi: 10.1111/j.1365-2141.2012.09061.x. Epub 2012 Feb 24.
6. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
7. Analysis of rs4671393 polymorphism in hemoglobin E/beta-thalassemia major in Guangxi Province of China. He Y, etal., J Pediatr Hematol Oncol. 2012 May;34(4):323-4. doi: 10.1097/MPH.0b013e3182370bff.
8. BCL11A overexpression predicts survival and relapse in non-small cell lung cancer and is modulated by microRNA-30a and gene amplification. Jiang BY, etal., Mol Cancer. 2013 Jun 12;12:61. doi: 10.1186/1476-4598-12-61.
9. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
10. DNA polymorphisms at the BCL11A, HBS1L-MYB, and beta-globin loci associate with fetal hemoglobin levels and pain crises in sickle cell disease. Lettre G, etal., Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11869-74. doi: 10.1073/pnas.0804799105. Epub 2008 Jul 30.
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. MGD IEA MGD IEA
13. The influence of the BCL11A polymorphism on the phenotype of patients with beta thalassemia could be affected by the beta globin locus control region and/or the Xmn1-HBG2 genotypic background. Neishabury M, etal., Blood Cells Mol Dis. 2013 Aug;51(2):80-4. doi: 10.1016/j.bcmd.2013.02.007. Epub 2013 Mar 28.
14. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
15. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
16. Mouse MP Annotation Import Pipeline RGD automated import pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Satterwhite E, etal., Blood. 2001 Dec 1;98(12):3413-20.
20. Correction of sickle cell disease in adult mice by interference with fetal hemoglobin silencing. Xu J, etal., Science. 2011 Nov 18;334(6058):993-6. doi: 10.1126/science.1211053. Epub 2011 Oct 13.
Additional References at PubMed
PMID:8563752   PMID:8889548   PMID:10349636   PMID:10744719   PMID:10757802   PMID:11042159   PMID:11076861   PMID:11161790   PMID:12477932   PMID:12618378   PMID:12717432   PMID:14610273  
PMID:15254596   PMID:15465497   PMID:15489334   PMID:15639232   PMID:16107646   PMID:16141072   PMID:16141073   PMID:16919269   PMID:17207666   PMID:18287559   PMID:18640244   PMID:18681895  
PMID:18948576   PMID:19030180   PMID:19092943   PMID:19386638   PMID:19571125   PMID:19657335   PMID:19799774   PMID:20089898   PMID:21194568   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:22235033   PMID:22491945   PMID:22988430   PMID:23230003   PMID:23361909   PMID:23576758   PMID:23644491   PMID:23741395   PMID:23975195   PMID:24316575   PMID:24371119   PMID:24442869  
PMID:24591644   PMID:24952961   PMID:25330008   PMID:25574598   PMID:25972180   PMID:26182416   PMID:26375006   PMID:26390863   PMID:27100196   PMID:27117402   PMID:27453576   PMID:27653684  
PMID:27707736   PMID:28671696   PMID:28935710   PMID:28942923   PMID:29044125   PMID:29055695   PMID:29513653   PMID:29606353   PMID:29898395   PMID:30127402   PMID:30242153   PMID:34095148  
PMID:34321999   PMID:34525371   PMID:34921112   PMID:34963132   PMID:35156680   PMID:35766181   PMID:35805190   PMID:37250402   PMID:37524711  


Genomics

Comparative Map Data
Bcl11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391124,026,498 - 24,123,558 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1124,028,056 - 24,124,123 (+)EnsemblGRCm39 Ensembl
GRCm381124,076,564 - 24,173,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1124,078,056 - 24,174,123 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,978,056 - 24,073,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361123,978,117 - 24,073,194 (+)NCBIMGSCv36mm8
Celera1126,200,322 - 26,297,352 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.41NCBI
BCL11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38260,450,520 - 60,553,924 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl260,450,520 - 60,554,467 (-)EnsemblGRCh38hg38GRCh38
GRCh37260,677,655 - 60,780,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36260,531,806 - 60,634,137 (-)NCBINCBI36Build 36hg18NCBI36
Build 34260,589,952 - 60,692,284NCBI
Celera260,521,903 - 60,624,215 (-)NCBICelera
Cytogenetic Map2p16.1NCBI
HuRef260,420,518 - 60,522,477 (-)NCBIHuRef
CHM1_1260,608,322 - 60,710,989 (-)NCBICHM1_1
T2T-CHM13v2.0260,456,325 - 60,559,762 (-)NCBIT2T-CHM13v2.0
Bcl11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814102,230,147 - 102,325,289 (+)NCBIGRCr8
mRatBN7.21498,029,018 - 98,124,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1498,030,461 - 98,124,180 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14102,356,972 - 102,441,929 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014103,601,214 - 103,686,130 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014100,072,890 - 100,157,850 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014108,826,717 - 108,921,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14108,826,831 - 108,921,669 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014108,546,630 - 108,641,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414105,002,744 - 105,088,365 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114105,021,975 - 105,116,487 (+)NCBI
Celera1496,996,223 - 97,081,419 (+)NCBICelera
Cytogenetic Map14q22NCBI
Bcl11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542423,233,523 - 23,330,679 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542423,233,523 - 23,330,679 (+)NCBIChiLan1.0ChiLan1.0
BCL11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21265,812,483 - 65,916,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A65,816,446 - 65,920,488 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A60,552,908 - 60,655,437 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A61,695,613 - 61,795,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A61,695,613 - 61,795,800 (-)Ensemblpanpan1.1panPan2
BCL11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11060,589,298 - 60,691,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1060,589,708 - 60,689,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,476,758 - 60,576,928 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01061,594,834 - 61,695,110 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1061,594,834 - 61,695,003 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11061,295,070 - 61,395,145 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01061,582,263 - 61,682,432 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01061,874,607 - 61,974,801 (-)NCBIUU_Cfam_GSD_1.0
Bcl11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,453,189 - 22,549,575 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364916,021,343 - 6,118,568 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364916,021,340 - 6,118,103 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCL11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl381,196,294 - 81,296,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1381,195,217 - 81,296,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2385,284,350 - 85,384,809 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCL11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11446,453,102 - 46,553,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604565,253,058 - 65,353,332 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcl11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248331,367,781 - 1,468,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248331,367,878 - 1,468,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bcl11a
2450 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1829
Count of miRNA genes:733
Interacting mature miRNAs:943
Transcripts:ENSMUST00000000881, ENSMUST00000109514, ENSMUST00000109516, ENSMUST00000118955, ENSMUST00000124148, ENSMUST00000127494
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse

Markers in Region
BE447163  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381124,166,994 - 24,167,081UniSTSGRCm38
MGSCv371124,066,994 - 24,067,081UniSTSGRCm37
Celera1126,290,180 - 26,290,267UniSTS
Cytogenetic Map11A3.2UniSTS
Whitehead/MRC_RH11396.54UniSTS
Bcl11a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371124,064,167 - 24,064,546UniSTSGRCm37
Celera1126,287,353 - 26,287,732UniSTS
Cytogenetic Map11A3.2UniSTS
cM Map11 UniSTS
Bcl11a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A3.2UniSTS
cM Map11 UniSTS
Bcl11a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381124,164,167 - 24,164,546UniSTSGRCm38
MGSCv371124,064,167 - 24,064,546UniSTSGRCm37
Celera1126,287,353 - 26,287,732UniSTS
Cytogenetic Map11A3.2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001159290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA008362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF051525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF169036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF169037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF186018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB649527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB662872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB853515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF731393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY735002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB524780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD355476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000881   ⟹   ENSMUSP00000000881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,028,056 - 24,123,194 (+)Ensembl
GRCm38.p6 Ensembl1124,078,056 - 24,173,194 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109514   ⟹   ENSMUSP00000105140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,028,173 - 24,118,429 (+)Ensembl
GRCm38.p6 Ensembl1124,078,173 - 24,168,429 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109516   ⟹   ENSMUSP00000105142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,028,117 - 24,124,123 (+)Ensembl
GRCm38.p6 Ensembl1124,078,117 - 24,174,123 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118955   ⟹   ENSMUSP00000112948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,030,670 - 24,123,558 (+)Ensembl
GRCm38.p6 Ensembl1124,080,670 - 24,173,558 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,028,147 - 24,040,906 (+)Ensembl
GRCm38.p6 Ensembl1124,078,147 - 24,090,906 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127494
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1124,092,379 - 24,113,291 (+)Ensembl
GRCm38.p6 Ensembl1124,142,379 - 24,163,291 (+)Ensembl
RefSeq Acc Id: NM_001159289   ⟹   NP_001152761
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,028,056 - 24,123,558 (+)NCBI
GRCm381124,078,056 - 24,173,558 (+)NCBI
MGSCv371123,978,056 - 24,073,558 (+)RGD
Celera1126,200,322 - 26,297,352 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159290   ⟹   NP_001152762
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,030,695 - 24,123,558 (+)NCBI
GRCm381124,080,695 - 24,173,558 (+)NCBI
MGSCv371123,978,056 - 24,073,558 (+)RGD
Celera1126,200,322 - 26,297,352 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001242934   ⟹   NP_001229863
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,028,056 - 24,118,435 (+)NCBI
GRCm381124,078,056 - 24,168,435 (+)NCBI
Celera1126,200,322 - 26,297,352 (+)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_016707   ⟹   NP_057916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,028,056 - 24,123,558 (+)NCBI
GRCm381124,078,056 - 24,173,558 (+)NCBI
MGSCv371123,978,056 - 24,073,558 (+)RGD
Celera1126,200,322 - 26,297,352 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514504   ⟹   XP_006514567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,564 - 24,118,435 (+)NCBI
GRCm381124,076,564 - 24,168,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006514507   ⟹   XP_006514570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,030,635 - 24,118,435 (+)NCBI
GRCm381124,078,524 - 24,168,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243659   ⟹   XP_011241961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,564 - 24,123,194 (+)NCBI
GRCm381124,076,564 - 24,173,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011243660   ⟹   XP_011241962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,027,441 - 24,118,435 (+)NCBI
GRCm381124,077,462 - 24,168,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245543   ⟹   XP_030101403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,027,441 - 24,123,194 (+)NCBI
GRCm381124,077,490 - 24,173,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245545   ⟹   XP_030101405
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,030,634 - 24,118,435 (+)NCBI
GRCm381124,080,634 - 24,168,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245547   ⟹   XP_030101407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,030,635 - 24,123,194 (+)NCBI
GRCm381124,078,531 - 24,173,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245548   ⟹   XP_030101408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,806 - 24,123,194 (+)NCBI
GRCm381124,077,515 - 24,173,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156314   ⟹   XP_036012207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,564 - 24,123,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156315   ⟹   XP_036012208
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,498 - 24,118,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156316   ⟹   XP_036012209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,564 - 24,118,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156317   ⟹   XP_036012210
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,027,500 - 24,118,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156318   ⟹   XP_036012211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,545 - 24,118,435 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156319   ⟹   XP_036012212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,498 - 24,123,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156320   ⟹   XP_036012213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,498 - 24,123,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156321   ⟹   XP_036012214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,564 - 24,123,194 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156322   ⟹   XP_036012215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391124,026,806 - 24,123,194 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001152761 (Get FASTA)   NCBI Sequence Viewer  
  NP_001152762 (Get FASTA)   NCBI Sequence Viewer  
  NP_001229863 (Get FASTA)   NCBI Sequence Viewer  
  NP_057916 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514567 (Get FASTA)   NCBI Sequence Viewer  
  XP_006514570 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241961 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241962 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101403 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101405 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101407 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101408 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012207 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012208 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012209 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012210 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012211 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012212 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012213 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012214 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012215 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF22430 (Get FASTA)   NCBI Sequence Viewer  
  AAF63682 (Get FASTA)   NCBI Sequence Viewer  
  AAF65928 (Get FASTA)   NCBI Sequence Viewer  
  AAF65929 (Get FASTA)   NCBI Sequence Viewer  
  AAH10585 (Get FASTA)   NCBI Sequence Viewer  
  AAH51418 (Get FASTA)   NCBI Sequence Viewer  
  BAB23285 (Get FASTA)   NCBI Sequence Viewer  
  BAC31616 (Get FASTA)   NCBI Sequence Viewer  
  BAC32416 (Get FASTA)   NCBI Sequence Viewer  
  BAC33881 (Get FASTA)   NCBI Sequence Viewer  
  BAC65839 (Get FASTA)   NCBI Sequence Viewer  
  BAE24527 (Get FASTA)   NCBI Sequence Viewer  
  BAE37838 (Get FASTA)   NCBI Sequence Viewer  
  EDL07901 (Get FASTA)   NCBI Sequence Viewer  
  EDL07902 (Get FASTA)   NCBI Sequence Viewer  
  EDL07903 (Get FASTA)   NCBI Sequence Viewer  
  EDL07904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000000881
  ENSMUSP00000000881.7
  ENSMUSP00000105140
  ENSMUSP00000105140.2
  ENSMUSP00000105142
  ENSMUSP00000105142.2
  ENSMUSP00000112948
  ENSMUSP00000112948.2
GenBank Protein Q9QYE3 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_057916   ⟸   NM_016707
- Peptide Label: isoform 1
- UniProtKB: Q9JLK8 (UniProtKB/Swiss-Prot),   Q9JIT4 (UniProtKB/Swiss-Prot),   Q9D0V2 (UniProtKB/Swiss-Prot),   Q921V4 (UniProtKB/Swiss-Prot),   Q8BWX3 (UniProtKB/Swiss-Prot),   Q8BLR4 (UniProtKB/Swiss-Prot),   Q8BLC7 (UniProtKB/Swiss-Prot),   Q80T89 (UniProtKB/Swiss-Prot),   Q9JLK9 (UniProtKB/Swiss-Prot),   Q9QYE3 (UniProtKB/Swiss-Prot),   Q3US10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152761   ⟸   NM_001159289
- Peptide Label: isoform 2
- UniProtKB: Q9QYE3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001152762   ⟸   NM_001159290
- Peptide Label: isoform 3
- UniProtKB: Q9QYE3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229863   ⟸   NM_001242934
- Peptide Label: isoform 4
- UniProtKB: Q3US10 (UniProtKB/TrEMBL),   Q5STS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514567   ⟸   XM_006514504
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514570   ⟸   XM_006514507
- Peptide Label: isoform X5
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241962   ⟸   XM_011243660
- Peptide Label: isoform X3
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241961   ⟸   XM_011243659
- Peptide Label: isoform X2
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101403   ⟸   XM_030245543
- Peptide Label: isoform X4
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101408   ⟸   XM_030245548
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030101407   ⟸   XM_030245547
- Peptide Label: isoform X8
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101405   ⟸   XM_030245545
- Peptide Label: isoform X7
- UniProtKB: Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000112948   ⟸   ENSMUST00000118955
RefSeq Acc Id: ENSMUSP00000000881   ⟸   ENSMUST00000000881
RefSeq Acc Id: ENSMUSP00000105140   ⟸   ENSMUST00000109514
RefSeq Acc Id: ENSMUSP00000105142   ⟸   ENSMUST00000109516
RefSeq Acc Id: XP_036012212   ⟸   XM_036156319
- Peptide Label: isoform X6
- UniProtKB: Q9QYE3 (UniProtKB/Swiss-Prot),   Q9JLK8 (UniProtKB/Swiss-Prot),   Q9JIT4 (UniProtKB/Swiss-Prot),   Q9D0V2 (UniProtKB/Swiss-Prot),   Q921V4 (UniProtKB/Swiss-Prot),   Q8BWX3 (UniProtKB/Swiss-Prot),   Q8BLR4 (UniProtKB/Swiss-Prot),   Q8BLC7 (UniProtKB/Swiss-Prot),   Q80T89 (UniProtKB/Swiss-Prot),   Q9JLK9 (UniProtKB/Swiss-Prot),   Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012213   ⟸   XM_036156320
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012208   ⟸   XM_036156315
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012211   ⟸   XM_036156318
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012207   ⟸   XM_036156314
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012214   ⟸   XM_036156321
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012209   ⟸   XM_036156316
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012215   ⟸   XM_036156322
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036012210   ⟸   XM_036156317
- Peptide Label: isoform X1
- UniProtKB: Q5STS9 (UniProtKB/TrEMBL),   Q3US10 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QYE3-F1-model_v2 AlphaFold Q9QYE3 1-773 view protein structure

Promoters
RGD ID:6820488
Promoter ID:MM_KWN:6708
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:OTTMUST00000011802
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361124,041,431 - 24,041,931 (+)MPROMDB
RGD ID:8674134
Promoter ID:EPDNEW_M15098
Type:initiation region
Name:Bcl11a_1
Description:Mus musculus B cell CLL/lymphoma 11A , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15099  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381124,078,034 - 24,078,094EPDNEW
RGD ID:8674136
Promoter ID:EPDNEW_M15099
Type:initiation region
Name:Bcl11a_2
Description:Mus musculus B cell CLL/lymphoma 11A , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15098  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381124,080,700 - 24,080,760EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106190 AgrOrtholog
Ensembl Genes ENSMUSG00000000861 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000881 ENTREZGENE
  ENSMUST00000000881.13 UniProtKB/Swiss-Prot
  ENSMUST00000109514 ENTREZGENE
  ENSMUST00000109514.8 UniProtKB/TrEMBL
  ENSMUST00000109516 ENTREZGENE
  ENSMUST00000109516.8 UniProtKB/Swiss-Prot
  ENSMUST00000118955 ENTREZGENE
  ENSMUST00000118955.2 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14025 UniProtKB/Swiss-Prot
MGD MGI:106190 ENTREZGENE
NCBI Gene 14025 ENTREZGENE
PANTHER B-CELL LYMPHOMA/LEUKEMIA 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B-CELL LYMPHOMA/LEUKEMIA 11A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bcl11a PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BC11A_MOUSE UniProtKB/Swiss-Prot
  Q3TP99_MOUSE UniProtKB/TrEMBL
  Q3US10 ENTREZGENE, UniProtKB/TrEMBL
  Q5STS9 ENTREZGENE, UniProtKB/TrEMBL
  Q80T89 ENTREZGENE
  Q8BLC7 ENTREZGENE
  Q8BLR4 ENTREZGENE
  Q8BWX3 ENTREZGENE
  Q921V4 ENTREZGENE
  Q9D0V2 ENTREZGENE
  Q9JIT4 ENTREZGENE
  Q9JLK8 ENTREZGENE
  Q9JLK9 ENTREZGENE
  Q9QYE3 ENTREZGENE
UniProt Secondary Q80T89 UniProtKB/Swiss-Prot
  Q8BLC7 UniProtKB/Swiss-Prot
  Q8BLR4 UniProtKB/Swiss-Prot
  Q8BWX3 UniProtKB/Swiss-Prot
  Q921V4 UniProtKB/Swiss-Prot
  Q9D0V2 UniProtKB/Swiss-Prot
  Q9JIT4 UniProtKB/Swiss-Prot
  Q9JLK8 UniProtKB/Swiss-Prot
  Q9JLK9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Bcl11a  BCL11 transcription factor A  Bcl11a  B cell CLL/lymphoma 11A (zinc finger protein)  Symbol and/or name change 5135510 APPROVED
2012-02-07 Bcl11a  B cell CLL/lymphoma 11A (zinc finger protein)  Bcl11a  B-cell CLL/lymphoma 11A (zinc finger protein)  Symbol and/or name change 5135510 APPROVED