Bcl11a (BCL11 transcription factor A)

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Gene: Bcl11a (BCL11 transcription factor A) Rattus norvegicus

Analyze

Symbol:

Bcl11a

Name:

BCL11 transcription factor A

RGD ID:

1309923

Description:

Enables protein kinase binding activity. Involved in several processes, including cellular response to L-glutamate; negative regulation of branching morphogenesis of a nerve; and negative regulation of dendrite development. Is active in postsynapse. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BCL11 transcription factor A); INTERACTS WITH 1,3-dinitrobenzene; 2-methoxyethanol; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

B-cell CLL/lymphoma 11A; B-cell CLL/lymphoma 11A (zinc finger protein); B-cell lymphoma/leukemia 11A; BAF chromatin remodeling complex subunit BCL11A; BCL11A, BAF complex component; LOC305589

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BCL11A (BCL11 transcription factor A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Bcl11a (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bcl11a (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BCL11A (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BCL11A (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bcl11a (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BCL11A (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BCL11A (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bcl11a (BCL11 transcription factor A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDH19 (cadherin 19)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	BCL11A (BCL11 transcription factor A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Bcl11a (BCL11 transcription factor A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bcl11aa (BAF chromatin remodeling complex subunit BCL11A a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG9650	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bcl-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bcl11a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	98,029,018 - 98,124,181 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	98,030,461 - 98,124,180 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	102,356,972 - 102,441,929 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	103,601,214 - 103,686,130 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	100,072,890 - 100,157,850 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	108,826,717 - 108,921,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	108,826,831 - 108,921,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	108,546,630 - 108,641,101 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	105,002,744 - 105,088,365 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	105,021,975 - 105,116,487 (+)	NCBI
Celera	14	96,996,223 - 97,081,419 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

Agenesis of Corpus Callosum (ISO)

apraxia (ISO)

autism spectrum disorder (ISO)

autosomal dominant intellectual developmental disorder 45 (ISO)

B-Cell Chronic Lymphocytic Leukemia (ISO)

beta thalassemia (ISO)

cerebellar hypoplasia (ISO)

COVID-19 (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH PERSISTENCE OF FETAL HEMOGLOBIN (ISO)

intellectual disability (ISO)

Language Development Disorders (ISO)

lung non-small cell carcinoma (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Neurodevelopmental Disorders (ISO)

polycystic ovary syndrome (ISO)

Postaxial Polydactyly (ISO)

Salivary Gland Neoplasms (ISO)

schizophrenia (ISO)

sickle cell anemia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-methoxyethanol (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

carbon nanotube (ISO)

casticin (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

choline (ISO)

chrysene (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

D-glucose (ISO)

dichloroacetic acid (ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

elemental selenium (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

fructose (ISO)

fulvestrant (ISO)

geraniol (ISO)

glucose (ISO)

glyphosate (ISO)

hydroquinone (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

maneb (ISO)

mercury dibromide (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

paraquat (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pioglitazone (ISO)

progesterone (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamibarotene (ISO)

temozolomide (ISO)

testosterone (ISO)

titanium dioxide (ISO)

topotecan (EXP)

Tributyltin oxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (ISO)

cellular response to L-glutamate (IEP)

gene expression (ISO)

negative regulation of branching morphogenesis of a nerve (IMP)

negative regulation of collateral sprouting (ISO)

negative regulation of dendrite development (IBA,IMP,ISO)

negative regulation of dendrite extension (IMP)

negative regulation of gene expression (ISO)

negative regulation of neuron projection development (ISO)

negative regulation of neuron remodeling (IMP)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of collateral sprouting (ISO)

positive regulation of gene expression (IMP)

positive regulation of neuron projection development (ISO)

protein sumoylation (ISO)

regulation of dendrite development (ISO)

regulation of transcription by RNA polymerase II (IBA)

T cell differentiation (ISO)

Cellular Component

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

paraspeckles (ISO)

postsynapse (IDA,IEP)

SWI/SNF complex (ISO)

Molecular Function

DNA-binding transcription factor activity (IBA)

DNA-binding transcription factor binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

protein kinase binding (IPI)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

transcription coregulator activity (ISO)

transcription corepressor activity (ISO)

transcription regulatory region nucleic acid binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Genetic Modifiers in beta-Thalassemia Intermedia: A Study on 102 Iraqi Arab Patients.	Al-Allawi NA, etal., Genet Test Mol Biomarkers. 2015 May;19(5):242-7. doi: 10.1089/gtmb.2014.0310. Epub 2015 Mar 9.
2.	BCL11A deletions result in fetal hemoglobin persistence and neurodevelopmental alterations.	Basak A, etal., J Clin Invest. 2015 Jun;125(6):2363-8. doi: 10.1172/JCI81163. Epub 2015 May 4.
3.	Molecular mechanism of yisui shengxue granule, a complex chinese medicine, on thalassemia patients suffering from hemolysis and anemia of erythrocytes.	Chu NL, etal., Evid Based Complement Alternat Med. 2014;2014:213782. doi: 10.1155/2014/213782. Epub 2014 Dec 10.
4.	Synaptic, transcriptional and chromatin genes disrupted in autism.	De Rubeis S, etal., Nature. 2014 Nov 13;515(7526):209-15. doi: 10.1038/nature13772. Epub 2014 Oct 29.
5.	Hydroxycarbamide alters erythroid gene expression in children with sickle cell anaemia.	Flanagan JM, etal., Br J Haematol. 2012 Apr;157(2):240-8. doi: 10.1111/j.1365-2141.2012.09061.x. Epub 2012 Feb 24.
6.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
8.	Analysis of rs4671393 polymorphism in hemoglobin E/beta-thalassemia major in Guangxi Province of China.	He Y, etal., J Pediatr Hematol Oncol. 2012 May;34(4):323-4. doi: 10.1097/MPH.0b013e3182370bff.
9.	BCL11A overexpression predicts survival and relapse in non-small cell lung cancer and is modulated by microRNA-30a and gene amplification.	Jiang BY, etal., Mol Cancer. 2013 Jun 12;12:61. doi: 10.1186/1476-4598-12-61.
10.	Expression of zinc finger transcription factor Bcl11A/Evi9/CTIP1 in rat brain.	Kuo TY and Hsueh YP, J Neurosci Res. 2007 Jun;85(8):1628-36.
11.	Bcl11A/CTIP1 mediates the effect of the glutamate receptor on axon branching and dendrite outgrowth.	Kuo TY, etal., J Neurochem. 2010 Sep 1;114(5):1381-92. doi: 10.1111/j.1471-4159.2010.06852.x. Epub 2010 Jun 8.
12.	X-linked mental retardation gene CASK interacts with Bcl11A/CTIP1 and regulates axon branching and outgrowth.	Kuo TY, etal., J Neurosci Res. 2010 Aug 15;88(11):2364-73. doi: 10.1002/jnr.22407.
13.	Bcl11A/CTIP1 regulates expression of DCC and MAP1b in control of axon branching and dendrite outgrowth.	Kuo TY, etal., Mol Cell Neurosci. 2009 Nov;42(3):195-207. doi: 10.1016/j.mcn.2009.07.006. Epub 2009 Jul 17.
14.	DNA polymorphisms at the BCL11A, HBS1L-MYB, and beta-globin loci associate with fetal hemoglobin levels and pain crises in sickle cell disease.	Lettre G, etal., Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11869-74. doi: 10.1073/pnas.0804799105. Epub 2008 Jul 30.
15.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
16.	The influence of the BCL11A polymorphism on the phenotype of patients with beta thalassemia could be affected by the beta globin locus control region and/or the Xmn1-HBG2 genotypic background.	Neishabury M, etal., Blood Cells Mol Dis. 2013 Aug;51(2):80-4. doi: 10.1016/j.bcmd.2013.02.007. Epub 2013 Mar 28.
17.	GOA pipeline	RGD automated data pipeline
18.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
20.	The BCL11 gene family: involvement of BCL11A in lymphoid malignancies.	Satterwhite E, etal., Blood. 2001 Dec 1;98(12):3413-20.
21.	Correction of sickle cell disease in adult mice by interference with fetal hemoglobin silencing.	Xu J, etal., Science. 2011 Nov 18;334(6058):993-6. doi: 10.1126/science.1211053. Epub 2011 Oct 13.

Additional References at PubMed

PMID:10744719	PMID:12477932	PMID:12717432	PMID:18681895	PMID:19153051	PMID:19657335	PMID:37316757

Genomics

Comparative Map Data

Bcl11a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	98,029,018 - 98,124,181 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	98,030,461 - 98,124,180 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	102,356,972 - 102,441,929 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	103,601,214 - 103,686,130 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	100,072,890 - 100,157,850 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	108,826,717 - 108,921,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	108,826,831 - 108,921,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	108,546,630 - 108,641,101 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	105,002,744 - 105,088,365 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	105,021,975 - 105,116,487 (+)	NCBI
Celera	14	96,996,223 - 97,081,419 (+)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

BCL11A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	60,450,520 - 60,553,924 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	60,450,520 - 60,554,467 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	60,677,655 - 60,780,789 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	60,531,806 - 60,634,137 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	60,589,952 - 60,692,284	NCBI
Celera	2	60,521,903 - 60,624,215 (-)	NCBI		Celera
Cytogenetic Map	2	p16.1	NCBI
HuRef	2	60,420,518 - 60,522,477 (-)	NCBI		HuRef
CHM1_1	2	60,608,322 - 60,710,989 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	60,456,325 - 60,559,762 (-)	NCBI		T2T-CHM13v2.0

Bcl11a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	24,026,498 - 24,123,558 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	24,028,056 - 24,124,123 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	24,076,564 - 24,173,558 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	24,078,056 - 24,174,123 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	23,978,056 - 24,073,558 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	23,978,117 - 24,073,194 (+)	NCBI		MGSCv36	mm8
Celera	11	26,200,322 - 26,297,352 (+)	NCBI		Celera
Cytogenetic Map	11	A3.2	NCBI
cM Map	11	14.41	NCBI

Bcl11a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	23,233,523 - 23,330,679 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	23,233,523 - 23,330,679 (+)	NCBI	ChiLan1.0	ChiLan1.0

BCL11A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	2A	65,816,446 - 65,920,488 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	60,552,908 - 60,655,437 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	61,695,613 - 61,795,818 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	61,695,613 - 61,795,800 (-)	Ensembl	panpan1.1		panPan2

BCL11A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	60,589,298 - 60,691,997 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	60,589,708 - 60,689,073 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	60,476,758 - 60,576,928 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	61,594,834 - 61,695,110 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	61,594,834 - 61,695,003 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	61,295,070 - 61,395,145 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	61,582,263 - 61,682,432 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	61,874,607 - 61,974,801 (-)	NCBI		UU_Cfam_GSD_1.0

Bcl11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	22,453,189 - 22,549,575 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	6,021,343 - 6,118,568 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936491	6,021,340 - 6,118,103 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCL11A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	81,196,294 - 81,296,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	81,195,217 - 81,296,165 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	85,284,350 - 85,384,809 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCL11A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	46,453,102 - 46,553,802 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	65,253,058 - 65,353,332 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcl11a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624833	1,367,781 - 1,468,400 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624833	1,367,878 - 1,468,257 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bcl11a
331 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	24
Count of miRNA genes:	23
Interacting mature miRNAs:	24
Transcripts:	ENSRNOT00000009421
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat

Markers in Region

D14Rat32

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,037,301 - 98,037,429 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,833,671 - 108,833,798	NCBI	Rnor6.0
Rnor_5.0	14	108,554,989 - 108,555,116	UniSTS	Rnor5.0
RGSC_v3.4	14	105,009,477 - 105,009,604	UniSTS	RGSC3.4
RGSC_v3.4	14	105,009,429 - 105,009,731	RGD	RGSC3.4
RGSC_v3.1	14	105,028,688 - 105,028,815	RGD
Celera	14	97,002,956 - 97,003,083	UniSTS
RH 3.4 Map	14	783.89	RGD
RH 3.4 Map	14	783.89	UniSTS
RH 2.0 Map	14	847.0	RGD
SHRSP x BN Map	14	67.5199	RGD
Cytogenetic Map	14	q22	UniSTS

RH138170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,043,268 - 98,043,388 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,840,146 - 108,840,265	NCBI	Rnor6.0
Rnor_5.0	14	108,560,618 - 108,560,737	UniSTS	Rnor5.0
RGSC_v3.4	14	105,015,418 - 105,015,537	UniSTS	RGSC3.4
Celera	14	97,009,017 - 97,009,136	UniSTS
RH 3.4 Map	14	784.69	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH139319

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,094,315 - 98,094,473 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,891,322 - 108,891,479	NCBI	Rnor6.0
Rnor_5.0	14	108,611,226 - 108,611,383	UniSTS	Rnor5.0
RGSC_v3.4	14	105,066,476 - 105,066,633	UniSTS	RGSC3.4
Celera	14	97,059,663 - 97,059,820	UniSTS
RH 3.4 Map	18	9.3	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH140039

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,117,838 - 98,118,047 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,914,846 - 108,915,054	NCBI	Rnor6.0
Rnor_5.0	14	108,634,750 - 108,634,958	UniSTS	Rnor5.0
RGSC_v3.4	14	105,090,006 - 105,090,214	UniSTS	RGSC3.4
Celera	14	97,083,187 - 97,083,395	UniSTS
RH 3.4 Map	14	783.89	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH140926

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,116,727 - 98,116,932 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,913,735 - 108,913,939	NCBI	Rnor6.0
Rnor_5.0	14	108,633,639 - 108,633,843	UniSTS	Rnor5.0
RGSC_v3.4	14	105,088,895 - 105,089,099	UniSTS	RGSC3.4
Celera	14	97,082,076 - 97,082,280	UniSTS
RH 3.4 Map	14	784.1	UniSTS
Cytogenetic Map	14	q22	UniSTS

AU049785

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,037,278 - 98,037,539 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,833,648 - 108,833,908	NCBI	Rnor6.0
Rnor_5.0	14	108,554,966 - 108,555,226	UniSTS	Rnor5.0
RGSC_v3.4	14	105,009,454 - 105,009,714	UniSTS	RGSC3.4
Celera	14	97,002,933 - 97,003,193	UniSTS
Cytogenetic Map	14	q22	UniSTS

Bcl11a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	98,115,071 - 98,115,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	108,912,079 - 108,912,458	NCBI	Rnor6.0
Rnor_5.0	14	108,631,983 - 108,632,362	UniSTS	Rnor5.0
RGSC_v3.4	14	105,087,239 - 105,087,618	UniSTS	RGSC3.4
Celera	14	97,080,420 - 97,080,799	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		12	12	8	12			58		4
Low	1	40	20	10	11	10			16	14	30	10
Below cutoff		3	17	11		11	6	6		14	7	1	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000009421 ⟹ ENSRNOP00000009421

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	98,030,461 - 98,123,956 (+)	Ensembl
Rnor_6.0 Ensembl	14	108,826,939 - 108,913,078 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083146 ⟹ ENSRNOP00000073102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	98,030,461 - 98,124,180 (+)	Ensembl
Rnor_6.0 Ensembl	14	108,826,831 - 108,921,669 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102043 ⟹ ENSRNOP00000091732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	98,036,725 - 98,116,965 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106316 ⟹ ENSRNOP00000093688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	98,030,461 - 98,116,965 (+)	Ensembl

RefSeq Acc Id:

NM_001191683 ⟹ NP_001178612

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,030,568 - 98,116,071 (+)	NCBI
Rnor_6.0	14	108,826,939 - 108,913,078 (+)	NCBI
Rnor_5.0	14	108,546,630 - 108,641,101 (+)	NCBI
Celera	14	96,996,223 - 97,081,419 (+)	NCBI

Sequence:

show sequence

TCTCTCTTCCTCTCTCTCTCTTTTTTTTTTCTTAAAAAAAAAAAAAAGCCATGACGGCTCTCCC
ACAATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCAC
TGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCCGATGTGAACCGAGC
CGTCGTCCGCACGCCGCCGCCGCCGCCGCCCGCCCGCCCCGCAGCCCACCATGTCTCGCCGCAA
GCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCGCCCGAACCTCTCGAAGCCATTCTT
ACAGATGATGAACCAGACCACGGCCCATTGGGAGCTCCAGAAGGGGACCATGACCTTCTCACCT
GTGGGCAGTGCCAGATGAATTTCCCATTGGGGGACATTCTTATTTTTATCGAGCACAAACGGAA
ACAATGCAATGGCAGCCTCTGCTTAGAAAAAGGTGTGGATAAGCCGCCTTCCCCTTCTCCCATC
GAGATGAAAAAGGCGTCCAATCCCGTGGAGGTTGGCATCCAGGTGACACCAGAAGATGACGATT
GTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACATAGCAGATAAACTTCTGCA
CTGGAGGGGCCTGTCCTCTCCTCGGTCTGCACACGGAGCCCTAATCCCCACGCCCGGGATGAGT
GCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGCTACACATGTACAACTTGCA
AACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCACAGAACACTCATGGATTAAGAAT
CTACTTAGAAAGCGAACACGGAAGCCCCCTGACCCCGCGGGTTGGTATCCCTTCAGGACTAGGT
GCAGAATGTCCTTCCCAGCCATCTCTCCATGGGATTCCTATTGCAGACAATAACCCCTTTAACC
TGCTAAGAATACCAGGATCAGTATCCAGAGAGGCTTCCGGCCTGGCAGAAGGGCGCTTTCCACC
CACTCCCCCCCTGTTTAGTCCACCACCGAGACATCACTTGGACCCCCACCGCATAGAGCGCCTG
GGGGCGGAAGAGATGGCCCTGGCCACCCATCACCCGAGTGCCTTTGACAGGGTGCTGCGGTTGA
ATCCAATGGCTATGGAGCCTCCGGCCATGGATTTCTCTAGGAGACTTAGAGAGCTGGCAGGGAA
CACGTCTAGTCCACCGCTGTCCCCAGGCCGGCCCAGCCCTATGCAAAGGTTACTGCAACCATTC
CAGCCAGGTAGCAAGCCACCCTTCCTGGCGACGCCCCCCCTCCCTCCTCTGCAATCCGCCCCTC
CTCCCTCCCAGCCCCCGGTCAAGTCCAAGTCATGCGAGTTCTGCGGCAAGACGTTCAAATTTCA
GAGCAACTTGGTGGTGCACCGGCGCAGCCATACTGGTGAGAAGCCCTACAAGTGCAACCTGTGC
GATCACGCGTGCACGCAGGCCAGCAAGCTGAAGCGTCACATGAAGACACACATGCACAAGTCGT
CCCCCATGACAGTTAAGTCCGACGACGGCCTCTCCACAGCCAGCTCCCCGGAACCTGGCACCAG
CGACCTGGTAGGCAGCGCCAGCAGTGCGCTCAAGTCAGTGGTGGCCAAGTTCAAGAGTGAGAAC
GACCCCAACTTGATCCCGGAGAACGGGGATGAGGAGGAAGAGGAGGACGACGAGGAAGAAGAGG
AAGAGGAGGAAGAGGAGGAGGAGGAGCTGACGGAGAGCGAGAGGGTGGACTACGGCTTCGGGCT
GAGCCTGGAGGCTGCGCGCCACCACGAGAACAGCTCTCGGGGCGCAGTGGTGGGCGTGGGCGAC
GAGGGCCGCGCCCTGCCCGATGTCATGCAGGGCATGGTGCTCAGCTCCATGCAGCACTTCAGCG
AGGCCTTCCACCAGGTCCTGGGCGAGAAGCATAAGCGCAGCCACCTGGCCGAGGCCGAGGGCCA
TAGGGACACTTGCGACGAAGACTCGGTGGCCGGCGAGTCGGACCGCATAGACGATGGCACTGTT
AATGGTCGTGGCTGCTCCCCTGGCGAATCGGCTTCGGGGGGTCTGTCCAAAAAGCTCCTGCTGG
GTAGCCCCAGCTCGCTGAGCCCCTTCTCCAAGCGCATCAAGCTGGAGAAGGAGTTTGACCTGCC
CCCGGCTGCGATGCCTAACACGGAGAACGTGTACTCGCAGTGGCTCGCTGGCTATGCAGCCTCC
AGGCAGCTCAAAGATCCCTTCCTTACCTTCGGAGACTCCAGACAATCGCCTTTTGCCTCCTCGT
CAGAGCACTCCTCGGAGAACGGGAGCTTGCGCTTCTCCACGCCGCCCGGGGAGCTGGACGGAGG
GATCTCGGGGCGCAGCGGCACGGGAAGTGGAGGGAGCACGCCCCATATTAGTGGTCCGGGCCCG
GGCAGGCCCAGCTCAAAAGAGGGCAGACGCAGCGACACTTGTGAGTACTGTGGGAAAGTCTTCA
AGAACTGTAGCAATCTCACTGTCCACAGGAGAAGCCACACGGGCGAAAGGCCTTATAAATGCGA
GCTGTGCAACTATGCCTGTGCCCAGAGTAGCAAGCTCACCAGGCACATGAAAACGCATGGCCAG
GTGGGGAAGGACGTTTACAAATGTGAAATTTGTAAGATGCCTTTTAGCGTGTACAGTACCCTGG
AGAAACACATGAAAAAATGGCACAGTGACCGAGTGTTGAATAATGATATAAAAACTGAATAG

hide sequence

RefSeq Acc Id:

XM_006251588 ⟹ XP_006251650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,030,795 - 98,124,181 (+)	NCBI
Rnor_6.0	14	108,826,718 - 108,921,196 (+)	NCBI
Rnor_5.0	14	108,546,630 - 108,641,101 (+)	NCBI

Sequence:

show sequence

TTTTTCATGTCCAGCCCCTGATGTGTGTCCATTGGTGTGAGCTTCCCCTTCCCTCCTCCCCTTC
TCTCCTGCTCGCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTT
CGCAGGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCATC
TCTCTCTCTCTCTCTCCCTCTATCCCTCTTCTCTCTTCCTCTCTCTCTCTTTTTTTTTTCTTAA
AAAAAAAAAAAAGCCATGACGGCTCTCCCACAATTCATCTTCCCTGCGCCATCTTTGTATTATT
TCTAATTTATTTTGGATGTCAAAAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTC
TAACCCGGCTCTCCCGATGTGAACCGAGCCGTCGTCCGCACGCCGCCGCCGCCGCCGCCCGCCC
GCCCCGCAGCCCACCATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAAT
TCTCGCCCGAACCTCTCGAAGCCATTCTTACAGATGATGAACCAGACCACGGCCCATTGGGAGC
TCCAGAAGGGGACCATGACCTTCTCACCTGTGGGCAGTGCCAGATGAATTTCCCATTGGGGGAC
ATTCTTATTTTTATCGAGCACAAACGGAAACAATGCAATGGCAGCCTCTGCTTAGAAAAAGGTG
TGGATAAGCCGCCTTCCCCTTCTCCCATCGAGATGAAAAAGGCGTCCAATCCCGTGGAGGTTGG
CATCCAGGTGACACCAGAAGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAA
CAGGAACACATAGCAGATAAACTTCTGCACTGGAGGGGCCTGTCCTCTCCTCGGTCTGCACACG
GAGCCCTAATCCCCACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGA
GCCCAGCAGCTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAA
CACGCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGCCCCCTGACCC
CGCGGGTTGGTATCCCTTCAGGACTAGGTGCAGAATGTCCTTCCCAGCCATCTCTCCATGGGAT
TCCTATTGCAGACAATAACCCCTTTAACCTGCTAAGAATACCAGGATCAGTATCCAGAGAGGCT
TCCGGCCTGGCAGAAGGGCGCTTTCCACCCACTCCCCCCCTGTTTAGTCCACCACCGAGACATC
ACTTGGACCCCCACCGCATAGAGCGCCTGGGGGCGGAAGAGATGGCCCTGGCCACCCATCACCC
GAGTGCCTTTGACAGGGTGCTGCGGTTGAATCCAATGGCTATGGAGCCTCCGGCCATGGATTTC
TCTAGGAGACTTAGAGAGCTGGCAGGGAACACGTCTAGTCCACCGCTGTCCCCAGGCCGGCCCA
GCCCTATGCAAAGGTTACTGCAACCATTCCAGCCAGGTAGCAAGCCACCCTTCCTGGCGACGCC
CCCCCTCCCTCCTCTGCAATCCGCCCCTCCTCCCTCCCAGCCCCCGGTCAAGTCCAAGTCATGC
GAGTTCTGCGGCAAGACGTTCAAATTTCAGAGCAACTTGGTGGTGCACCGGCGCAGCCATACTG
GTGAGAAGCCCTACAAGTGCAACCTGTGCGATCACGCGTGCACGCAGGCCAGCAAGCTGAAGCG
TCACATGAAGACACACATGCACAAGTCGTCCCCCATGACAGTTAAGTCCGACGACGGCCTCTCC
ACAGCCAGCTCCCCGGAACCTGGCACCAGCGACCTGGTAGGCAGCGCCAGCAGTGCGCTCAAGT
CAGTGGTGGCCAAGTTCAAGAGTGAGAACGACCCCAACTTGATCCCGGAGAACGGGGATGAGGA
GGAAGAGGAGGACGACGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGCTGACGGAG
AGCGAGAGGGTGGACTACGGCTTCGGGCTGAGCCTGGAGGCTGCGCGCCACCACGAGAACAGCT
CTCGGGGCGCAGTGGTGGGCGTGGGCGACGAGGGCCGCGCCCTGCCCGATGTCATGCAGGGCAT
GGTGCTCAGCTCCATGCAGCACTTCAGCGAGGCCTTCCACCAGGTCCTGGGCGAGAAGCATAAG
CGCAGCCACCTGGCCGAGGCCGAGGGCCATAGGGACACTTGCGACGAAGACTCGGTGGCCGGCG
AGTCGGACCGCATAGACGATGGCACTGTTAATGGTCGTGGCTGCTCCCCTGGCGAATCGGCTTC
GGGGGGTCTGTCCAAAAAGCTCCTGCTGGGTAGCCCCAGCTCGCTGAGCCCCTTCTCCAAGCGC
ATCAAGCTGGAGAAGGAGTTTGACCTGCCCCCGGCTGCGATGCCTAACACGGAGAACGTGTACT
CGCAGTGGCTCGCTGGCTATGCAGCCTCCAGGCAGCTCAAAGATCCCTTCCTTACCTTCGGAGA
CTCCAGACAATCGCCTTTTGCCTCCTCGTCAGAGCACTCCTCGGAGAACGGGAGCTTGCGCTTC
TCCACGCCGCCCGGGGAGCTGGACGGAGGGATCTCGGGGCGCAGCGGCACGGGAAGTGGAGGGA
GCACGCCCCATATTAGTGGTCCGGGCCCGGGCAGGCCCAGCTCAAAAGAGGGCAGACGCAGCGA
CACTTGTCCTTCACACACCCCCGTTCGGCGTAGTACCCCGAGAGCTCAGGATGTGTGGCAGTTT
TCGGATGGAAGCTCAAGAGCCCCTAAGTTCTGAAAAACTCTGAAACCCCCCAGGGGCGGGGGCT
GGACATGCGCCCGCCCAGCCGATGTCAGCGAGCTCCGTCATCCTGCTAGTTTGTGATGTTTTCT
GACAGTAGCCTCCAGAGAGACAAGAGTCCTGCCGAGTCCTCCCAGCCTGGGCCCTGCCAGTGCC
CATTTTATTTATATTTTTTTAATAAAACGTAAAAAACAAAAAAAACAGACCCACATTGGAACAG
TGAATCCGTCCCATTCAGAGGGCCCTCGGACTGCCCCGCGGTCGAAGAGGCGTCCAACCCTTGT
GAAACCAGCCGACCTAATTACCCGTATTGTGGAGATGAGCATGAGTCCCTAACCCCTCGTTTCT
ATACATTCTATGTTGTCTTTTAAAAAGTGTGCTTAACATTGACATAATAAATGTTGGAGCTTTA

hide sequence

RefSeq Acc Id:

XM_006251594 ⟹ XP_006251656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,029,051 - 98,124,181 (+)	NCBI
Rnor_6.0	14	108,826,733 - 108,921,196 (+)	NCBI
Rnor_5.0	14	108,546,630 - 108,641,101 (+)	NCBI

Sequence:

show sequence

CCCTGATGTGTGTCCATTGGTGTGAGCTTCCCCTTCCCTCCTCCCCTTCTCTCCTGCTCGCCCT
GCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCAGGGACGTCACG
TCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCATCTCTCTCTCTCTCTCT
CCCTCTATCCCTCTTCTCTCTTCCTCTCTCTCTCTTTTTTTTTTCTTAAAAAAAAAAAAAAGCC
ATGACGGCTCTCCCACAATTCATCTTCCCTGCGCCATCTTTGTATTATTTCTAATTTATTTTGG
ATGTCAAAAGGCACTGATGAAGATATTTTCTCTGGAGTCTCCTTCTTTCTAACCCGGCTCTCCC
GATGTGAACCGAGCCGTCGTCCGCACGCCGCCGCCGCCGCCGCCCGCCCGCCCCGCAGCCCACC
ATGTCTCGCCGCAAGCAAGGCAAACCCCAGCACTTAAGCAAACGGGAATTCTCGCCCGAACCTC
TCGAAGCCATTCTTACAGATGATGAACCAGACCACGGCCCATTGGGAGCTCCAGAAGGGGACCA
TGACCTTCTCACCTGTGGGCAGTGCCAGATGAATTTCCCATTGGGGGACATTCTTATTTTTATC
GAGCACAAACGGAAACAATGCAATGGCAGCCTCTGCTTAGAAAAAGGTGTGGATAAGCCGCCTT
CCCCTTCTCCCATCGAGATGAAAAAGGCGTCCAATCCCGTGGAGGTTGGCATCCAGGTGACACC
AGAAGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAGGAACACATAGCA
GATAAACTTCTGCACTGGAGGGGCCTGTCCTCTCCTCGGTCTGCACACGGAGCCCTAATCCCCA
CGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGCTACAC
ATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCACAGAACACT
CATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGCCCCCTGACCCCGCGGGTCCTTCACA
CACCCCCGTTCGGCGTAGTACCCCGAGAGCTCAGGATGTGTGGCAGTTTTCGGATGGAAGCTCA
AGAGCCCCTAAGTTCTGAAAAACTCTGAAACCCCCCAGGGGCGGGGGCTGGACATGCGCCCGCC
CAGCCGATGTCAGCGAGCTCCGTCATCCTGCTAGTTTGTGATGTTTTCTGACAGTAGCCTCCAG
AGAGACAAGAGTCCTGCCGAGTCCTCCCAGCCTGGGCCCTGCCAGTGCCCATTTTATTTATATT
TTTTTAATAAAACGTAAAAAACAAAAAAAACAGACCCACATTGGAACAGTGAATCCGTCCCATT
CAGAGGGCCCTCGGACTGCCCCGCGGTCGAAGAGGCGTCCAACCCTTGTGAAACCAGCCGACCT
AATTACCCGTATTGTGGAGATGAGCATGAGTCCCTAACCCCTCGTTTCTATACATTCTATGTTG
TCTTTTAAAAAGTGTGCTTAACATTGACATAATAAATGTTGGAGCTTTA

hide sequence

RefSeq Acc Id:

XM_017599256 ⟹ XP_017454745

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,033,045 - 98,124,181 (+)	NCBI
Rnor_6.0	14	108,827,245 - 108,921,196 (+)	NCBI

Sequence:

show sequence

CCAATAATAGTAATAATAATTATTAATAATCACGAGGGCGCGCGGGACGCTAAGCAAGAGTGAG
GTTAAGAGAGGGGTGTGTGCATGCATTAAATTTTTTTCAGGTGAAAAACCTTCGGTAGTCGAAG
TAAAAAGAGATTAAAAGGGAAAAAGCCCCTCATGCCCTCTCGAACGAGAACCGTGTGCACTTTT
GAGACGGCACGCATCTTTTTAATTTTTATAAAAAAATTGACTCCTCCTCTTTCCTTCTCTCCGC
CGCTTTATTCCTTCTTTGAAAAAGGAATGCAATGATTTCTACCCTAGTTTTGCAAAAATAATGA
ACAATGCTAAGGACGCGGACACTCACATGCAAACCTGGGGGTGGGAGCTTGAAGGAAAGGGGGT
TGTTTCCACTTCACTATAGGAAAATGGAGGGGGGGGGAGGGAGGGAGTCAAGTCTGAAAAACAA
TTCCTGGGGAGAAAAGAGGTGAGACCGGCCTTAGGACGCCAACGTGTGCATGGTCAAGTGTGCA
GTGGGAGGAAAGTAGTCACCCCCACAATAGTACGAAAGTGGGACTGTAGAAGAGAGCCGCTGGC
GCTTCCCAGTCAGCCGAGTCCGGGGAGAGGGGCTGCAGCGGCTGGGAGGGCCGGGTGACCGGGA
AGGACCGGAGTCGCGCCCGGCGCTGCCGTCTTTTGTTCCGGCCGGAGGTGGGTGTTTGTCCCGC
CGCCTTTTGTGCGGGCTCCTCGCGCTTGCCCTCCTGCGCCGCCACCGCTGCCGAAGGGCAGGAG
CAAGGGCCGAGCGAAGAGGCAGCCAGGGGCACGCGGTAGAGGGAGGGCGGGCGGGTGCAGGAGT
CTCCGCTGCTGGGTTGCTGCTGCCCGCCCCTCCTGGGTGAGCCCTGAAGGAGACGAGGCGAAGA
TGCGCAAAATAAATAAAAAAAATTAATAAATTTAAGCAACGCAAGAGAATGTACAATTTCTTGC
TCCCCCAAAGAAGCCAAACATTCTGCCAGTCGTATTTTTCACCTCTTTCCTGGATTCGTTCGCA
CCCCCACCCCTGCAGAAATTCCAGTCTTTAATAGAGAAAAGAGAGGGGGAAAAAAGAAAAGGAA
AAAAAAAATCCCTGACACCCCTTCCCCCAAACCCCATCAAGTTGCAAACTTAGAACCCGGCGGC
ATGGAGAGGGAAGCGAGGAACTCCCTCCTCTTACTATTTTTTGGAAGATTTTCAAAAAAAGTGG
AAGTGGATTTTGATTGGGAAAAATCTCGTGTCTGAATGTTTACAAGCACCGCGTGTGCGGGAGC
CTCCTGCCAACAAACAGACAGAGGACCGAGCGCGCCGCGGCAGCCCTGGAGCAGGCGGCCGCAG
CGGCTGGGCCTCGCCCGACCTCGCCGTGCCCTAGTCTGGAGTCGAGATCGCCCACCCGGCGCTC
GCCGCCCACCCGCCAGGCAGGGCGGCAGGCCACGCTGCGACTCCGCCAGCCCGGCCTGCGCTCT
GGTCCGCCCCTAGCACAATACCCAACCCTCCCACCGACCTCTCAGACAGCGAAAGCTGCTGGAT
GAAACTCGGTTTTGCAAAACATTTTTTTTTTTTTAATTTTGCAAAGCAACTGTAAAGGCGAGTT
TTGCTAGTCCCTTCAACTGCACCCGGGGTACTCTTTTAGGTTCCTCTTGTCCTTAACTCTGGGG
CCGTTGAGAGGTTACCACGTGCTTACAGCCCCCCCCCCCCAAATCTGGCCAGTAGCCTCTCGGA
CCAAAGCAGTTTCTTGGCTAGGTTGGGGAGGGGGCGGGGCAGGAGAAGTGTGTTGAGTGTGCAT
TTTGGGGGTGCAGGGTCCCCGCACTCAGTGAGCCTCACCTTTGGGTTCTTGCCCTCTACCCTGG
GCCTGTCTTGGGCAGGGGTTTCTGTGAGTTTATGTAAAGTGTTAGTGGCGGTGACGATAATCTC
TACTTGAGGTGTGCTGGGAGAGGCTGGTGGTGGGCACTTAGGAAAGTTTGAGTCCAGTAAGAAA
AGACATAGAGCCTCCCCCCCAAGCCCCCCTTCAATTCCTTCTTTTTCACTCATGACTCTTATTT
TTCGACGAAAGCTTGAAGGACCCCCATGTCTCTCCTGCATTTGTCGAGGGTGGGGTGCTCATTG
GGAATTGAATATTTTTCCCTCTGGGCCCTGGAACTTGTCACACACTTCAGAAGCTCCCCCGCCC
TGGCACGTTGCGGGGCCCTCCCTCTCCCCACCCCCGCGCATCTCTCCCTCGCCGCTCTCCCCCG
CCCCCACTCCCACCGGCCGCGCCGGATACAGAGCAGACGCGGCGCGCGACGGTGTGAAGTTACA
GCCCGGCCAGCCGAACCTCTCGAAGCCATTCTTACAGATGATGAACCAGACCACGGCCCATTGG
GAGCTCCAGAAGGGGACCATGACCTTCTCACCTGTGGGCAGTGCCAGATGAATTTCCCATTGGG
GGACATTCTTATTTTTATCGAGCACAAACGGAAACAATGCAATGGCAGCCTCTGCTTAGAAAAA
GGTGTGGATAAGCCGCCTTCCCCTTCTCCCATCGAGATGAAAAAGGCGTCCAATCCCGTGGAGG
TTGGCATCCAGGTGACACCAGAAGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCC
CAAACAGGAACACATAGCAGATAAACTTCTGCACTGGAGGGGCCTGTCCTCTCCTCGGTCTGCA
CACGGAGCCCTAATCCCCACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAG
ATGAGCCCAGCAGCTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTT
GCAACACGCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGCCCCCTG
ACCCCGCGGGTTGGTATCCCTTCAGGACTAGGTGCAGAATGTCCTTCCCAGCCATCTCTCCATG
GGATTCCTATTGCAGACAATAACCCCTTTAACCTGCTAAGAATACCAGGATCAGTATCCAGAGA
GGCTTCCGGCCTGGCAGAAGGGCGCTTTCCACCCACTCCCCCCCTGTTTAGTCCACCACCGAGA
CATCACTTGGACCCCCACCGCATAGAGCGCCTGGGGGCGGAAGAGATGGCCCTGGCCACCCATC
ACCCGAGTGCCTTTGACAGGGTGCTGCGGTTGAATCCAATGGCTATGGAGCCTCCGGCCATGGA
TTTCTCTAGGAGACTTAGAGAGCTGGCAGGGAACACGTCTAGTCCACCGCTGTCCCCAGGCCGG
CCCAGCCCTATGCAAAGGTTACTGCAACCATTCCAGCCAGGTAGCAAGCCACCCTTCCTGGCGA
CGCCCCCCCTCCCTCCTCTGCAATCCGCCCCTCCTCCCTCCCAGCCCCCGGTCAAGTCCAAGTC
ATGCGAGTTCTGCGGCAAGACGTTCAAATTTCAGAGCAACTTGGTGGTGCACCGGCGCAGCCAT
ACTGGTGAGAAGCCCTACAAGTGCAACCTGTGCGATCACGCGTGCACGCAGGCCAGCAAGCTGA
AGCGTCACATGAAGACACACATGCACAAGTCGTCCCCCATGACAGTTAAGTCCGACGACGGCCT
CTCCACAGCCAGCTCCCCGGAACCTGGCACCAGCGACCTGGTAGGCAGCGCCAGCAGTGCGCTC
AAGTCAGTGGTGGCCAAGTTCAAGAGTGAGAACGACCCCAACTTGATCCCGGAGAACGGGGATG
AGGAGGAAGAGGAGGACGACGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAGGAGGAGCTGAC
GGAGAGCGAGAGGGTGGACTACGGCTTCGGGCTGAGCCTGGAGGCTGCGCGCCACCACGAGAAC
AGCTCTCGGGGCGCAGTGGTGGGCGTGGGCGACGAGGGCCGCGCCCTGCCCGATGTCATGCAGG
GCATGGTGCTCAGCTCCATGCAGCACTTCAGCGAGGCCTTCCACCAGGTCCTGGGCGAGAAGCA
TAAGCGCAGCCACCTGGCCGAGGCCGAGGGCCATAGGGACACTTGCGACGAAGACTCGGTGGCC
GGCGAGTCGGACCGCATAGACGATGGCACTGTTAATGGTCGTGGCTGCTCCCCTGGCGAATCGG
CTTCGGGGGGTCTGTCCAAAAAGCTCCTGCTGGGTAGCCCCAGCTCGCTGAGCCCCTTCTCCAA
GCGCATCAAGCTGGAGAAGGAGTTTGACCTGCCCCCGGCTGCGATGCCTAACACGGAGAACGTG
TACTCGCAGTGGCTCGCTGGCTATGCAGCCTCCAGGCAGCTCAAAGATCCCTTCCTTACCTTCG
GAGACTCCAGACAATCGCCTTTTGCCTCCTCGTCAGAGCACTCCTCGGAGAACGGGAGCTTGCG
CTTCTCCACGCCGCCCGGGGAGCTGGACGGAGGGATCTCGGGGCGCAGCGGCACGGGAAGTGGA
GGGAGCACGCCCCATATTAGTGGTCCGGGCCCGGGCAGGCCCAGCTCAAAAGAGGGCAGACGCA
GCGACACTTGTCCTTCACACACCCCCGTTCGGCGTAGTACCCCGAGAGCTCAGGATGTGTGGCA
GTTTTCGGATGGAAGCTCAAGAGCCCCTAAGTTCTGAAAAACTCTGAAACCCCCCAGGGGCGGG
GGCTGGACATGCGCCCGCCCAGCCGATGTCAGCGAGCTCCGTCATCCTGCTAGTTTGTGATGTT
TTCTGACAGTAGCCTCCAGAGAGACAAGAGTCCTGCCGAGTCCTCCCAGCCTGGGCCCTGCCAG
TGCCCATTTTATTTATATTTTTTTAATAAAACGTAAAAAACAAAAAAAACAGACCCACATTGGA
ACAGTGAATCCGTCCCATTCAGAGGGCCCTCGGACTGCCCCGCGGTCGAAGAGGCGTCCAACCC
TTGTGAAACCAGCCGACCTAATTACCCGTATTGTGGAGATGAGCATGAGTCCCTAACCCCTCGT
TTCTATACATTCTATGTTGTCTTTTAAAAAGTGTGCTTAACATTGACATAATAAATGTTGGAGC
TTTA

hide sequence

RefSeq Acc Id:

XM_017599258 ⟹ XP_017454747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,033,050 - 98,124,181 (+)	NCBI
Rnor_6.0	14	108,827,252 - 108,921,197 (+)	NCBI

Sequence:

show sequence

TAGTAATAATAATTATTAATAATCACGAGGGCGCGCGGGACGCTAAGCAAGAGTGAGGTTAAGA
GAGGGGTGTGTGCATGCATTAAATTTTTTTCAGGTGAAAAACCTTCGGTAGTCGAAGTAAAAAG
AGATTAAAAGGGAAAAAGCCCCTCATGCCCTCTCGAACGAGAACCGTGTGCACTTTTGAGACGG
CACGCATCTTTTTAATTTTTATAAAAAAATTGACTCCTCCTCTTTCCTTCTCTCCGCCGCTTTA
TTCCTTCTTTGAAAAAGGAATGCAATGATTTCTACCCTAGTTTTGCAAAAATAATGAACAATGC
TAAGGACGCGGACACTCACATGCAAACCTGGGGGTGGGAGCTTGAAGGAAAGGGGGTTGTTTCC
ACTTCACTATAGGAAAATGGAGGGGGGGGGAGGGAGGGAGTCAAGTCTGAAAAACAATTCCTGG
GGAGAAAAGAGGTGAGACCGGCCTTAGGACGCCAACGTGTGCATGGTCAAGTGTGCAGTGGGAG
GAAAGTAGTCACCCCCACAATAGTACGAAAGTGGGACTGTAGAAGAGAGCCGCTGGCGCTTCCC
AGTCAGCCGAGTCCGGGGAGAGGGGCTGCAGCGGCTGGGAGGGCCGGGTGACCGGGAAGGACCG
GAGTCGCGCCCGGCGCTGCCGTCTTTTGTTCCGGCCGGAGGTGGGTGTTTGTCCCGCCGCCTTT
TGTGCGGGCTCCTCGCGCTTGCCCTCCTGCGCCGCCACCGCTGCCGAAGGGCAGGAGCAAGGGC
CGAGCGAAGAGGCAGCCAGGGGCACGCGGTAGAGGGAGGGCGGGCGGGTGCAGGAGTCTCCGCT
GCTGGGTTGCTGCTGCCCGCCCCTCCTGGGTGAGCCCTGAAGGAGACGAGGCGAAGATGCGCAA
AATAAATAAAAAAAATTAATAAATTTAAGCAACGCAAGAGAATGTACAATTTCTTGCTCCCCCA
AAGAAGCCAAACATTCTGCCAGTCGTATTTTTCACCTCTTTCCTGGATTCGTTCGCACCCCCAC
CCCTGCAGAAATTCCAGTCTTTAATAGAGAAAAGAGAGGGGGAAAAAAGAAAAGGAAAAAAAAA
ATCCCTGACACCCCTTCCCCCAAACCCCATCAAGTTGCAAACTTAGAACCCGGCGGCATGGAGA
GGGAAGCGAGGAACTCCCTCCTCTTACTATTTTTTGGAAGATTTTCAAAAAAAGTGGAAGTGGA
TTTTGATTGGGAAAAATCTCGTGTCTGAATGTTTACAAGCACCGCGTGTGCGGGAGCCTCCTGC
CAACAAACAGACAGAGGACCGAGCGCGCCGCGGCAGCCCTGGAGCAGGCGGCCGCAGCGGCTGG
GCCTCGCCCGACCTCGCCGTGCCCTAGTCTGGAGTCGAGATCGCCCACCCGGCGCTCGCCGCCC
ACCCGCCAGGCAGGGCGGCAGGCCACGCTGCGACTCCGCCAGCCCGGCCTGCGCTCTGGTCCGC
CCCTAGCACAATACCCAACCCTCCCACCGACCTCTCAGACAGCGAAAGCTGCTGGATGAAACTC
GGTTTTGCAAAACATTTTTTTTTTTTTAATTTTGCAAAGCAACTGTAAAGGCGAGTTTTGCTAG
TCCCTTCAACTGCACCCGGGGTACTCTTTTAGGTTCCTCTTGTCCTTAACTCTGGGGCCGTTGA
GAGGTTACCACGTGCTTACAGCCCCCCCCCCCCAAATCTGGCCAGTAGCCTCTCGGACCAAAGC
AGTTTCTTGGCTAGGTTGGGGAGGGGGCGGGGCAGGAGAAGTGTGTTGAGTGTGCATTTTGGGG
GTGCAGGGTCCCCGCACTCAGTGAGCCTCACCTTTGGGTTCTTGCCCTCTACCCTGGGCCTGTC
TTGGGCAGGGGTTTCTGTGAGTTTATGTAAAGTGTTAGTGGCGGTGACGATAATCTCTACTTGA
GGTGTGCTGGGAGAGGCTGGTGGTGGGCACTTAGGAAAGTTTGAGTCCAGTAAGAAAAGACATA
GAGCCTCCCCCCCAAGCCCCCCTTCAATTCCTTCTTTTTCACTCATGACTCTTATTTTTCGACG
AAAGCTTGAAGGACCCCCATGTCTCTCCTGCATTTGTCGAGGGTGGGGTGCTCATTGGGAATTG
AATATTTTTCCCTCTGGGCCCTGGAACTTGTCACACACTTCAGAAGCTCCCCCGCCCTGGCACG
TTGCGGGGCCCTCCCTCTCCCCACCCCCGCGCATCTCTCCCTCGCCGCTCTCCCCCGCCCCCAC
TCCCACCGGCCGCGCCGGATACAGAGCAGACGCGGCGCGCGACGGTGTGAAGTTACAGCCCGGC
CAGCCGAACCTCTCGAAGCCATTCTTACAGATGATGAACCAGACCACGGCCCATTGGGAGCTCC
AGAAGGGGACCATGACCTTCTCACCTGTGGGCAGTGCCAGATGAATTTCCCATTGGGGGACATT
CTTATTTTTATCGAGCACAAACGGAAACAATGCAATGGCAGCCTCTGCTTAGAAAAAGGTGTGG
ATAAGCCGCCTTCCCCTTCTCCCATCGAGATGAAAAAGGCGTCCAATCCCGTGGAGGTTGGCAT
CCAGGTGACACCAGAAGATGACGATTGTTTATCAACGTCATCTAGAGGAATTTGCCCCAAACAG
GAACACATAGCAGATAAACTTCTGCACTGGAGGGGCCTGTCCTCTCCTCGGTCTGCACACGGAG
CCCTAATCCCCACGCCCGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCC
CAGCAGCTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACAC
GCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGCCCCCTGACCCCGC
GGGTCCTTCACACACCCCCGTTCGGCGTAGTACCCCGAGAGCTCAGGATGTGTGGCAGTTTTCG
GATGGAAGCTCAAGAGCCCCTAAGTTCTGAAAAACTCTGAAACCCCCCAGGGGCGGGGGCTGGA
CATGCGCCCGCCCAGCCGATGTCAGCGAGCTCCGTCATCCTGCTAGTTTGTGATGTTTTCTGAC
AGTAGCCTCCAGAGAGACAAGAGTCCTGCCGAGTCCTCCCAGCCTGGGCCCTGCCAGTGCCCAT
TTTATTTATATTTTTTTAATAAAACGTAAAAAACAAAAAAAACAGACCCACATTGGAACAGTGA
ATCCGTCCCATTCAGAGGGCCCTCGGACTGCCCCGCGGTCGAAGAGGCGTCCAACCCTTGTGAA
ACCAGCCGACCTAATTACCCGTATTGTGGAGATGAGCATGAGTCCCTAACCCCTCGTTTCTATA
CATTCTATGTTGTCTTTTAAAAAGTGTGCTTAACATTGACATAATAAATGTTGGAGCTTTAG

hide sequence

RefSeq Acc Id:

XM_039092104 ⟹ XP_038948032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,029,024 - 98,123,936 (+)	NCBI

RefSeq Acc Id:

XM_039092105 ⟹ XP_038948033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,029,018 - 98,123,936 (+)	NCBI

RefSeq Acc Id:

XM_039092106 ⟹ XP_038948034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,029,020 - 98,124,181 (+)	NCBI

RefSeq Acc Id:

XM_039092107 ⟹ XP_038948035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,033,044 - 98,124,181 (+)	NCBI

RefSeq Acc Id:

XM_039092108 ⟹ XP_038948036

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,033,733 - 98,124,181 (+)	NCBI

RefSeq Acc Id:

XM_039092109 ⟹ XP_038948037

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,033,201 - 98,124,181 (+)	NCBI

RefSeq Acc Id:

XM_039092110 ⟹ XP_038948038

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,068,926 - 98,124,181 (+)	NCBI

RefSeq Acc Id:

XM_039092112 ⟹ XP_038948040

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	98,029,027 - 98,124,181 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178612	(Get FASTA)	NCBI Sequence Viewer
	XP_006251650	(Get FASTA)	NCBI Sequence Viewer
	XP_006251656	(Get FASTA)	NCBI Sequence Viewer
	XP_017454745	(Get FASTA)	NCBI Sequence Viewer
	XP_017454747	(Get FASTA)	NCBI Sequence Viewer
	XP_038948032	(Get FASTA)	NCBI Sequence Viewer
	XP_038948033	(Get FASTA)	NCBI Sequence Viewer
	XP_038948034	(Get FASTA)	NCBI Sequence Viewer
	XP_038948035	(Get FASTA)	NCBI Sequence Viewer
	XP_038948036	(Get FASTA)	NCBI Sequence Viewer
	XP_038948037	(Get FASTA)	NCBI Sequence Viewer
	XP_038948038	(Get FASTA)	NCBI Sequence Viewer
	XP_038948040	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86607	(Get FASTA)	NCBI Sequence Viewer
	AAI58690	(Get FASTA)	NCBI Sequence Viewer
	EDL97999	(Get FASTA)	NCBI Sequence Viewer
	EDL98000	(Get FASTA)	NCBI Sequence Viewer
	EDL98001	(Get FASTA)	NCBI Sequence Viewer
	EDL98002	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009421
	ENSRNOP00000009421.5
	ENSRNOP00000073102
	ENSRNOP00000073102.2
	ENSRNOP00000091732.1
	ENSRNOP00000093688
	ENSRNOP00000093688.1

RefSeq Acc Id:

NP_001178612 ⟸ NM_001191683

- UniProtKB:

A0A8I6AXE0 (UniProtKB/TrEMBL), A0A8I6ATN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFI
EHKRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIA
DKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNT
HGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPSLHGIPIADNNPFNLLRIPGSVSREASGLAE
GRFPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLR
ELAGNTSSPPLSPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGK
TFKFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSP
EPGTSDLVGSASSALKSVVAKFKSENDPNLIPENGDEEEEEDDEEEEEEEEEEEEELTESERVD
YGFGLSLEAARHHENSSRGAVVGVGDEGRALPDVMQGMVLSSMQHFSEAFHQVLGEKHKRSHLA
EAEGHRDTCDEDSVAGESDRIDDGTVNGRGCSPGESASGGLSKKLLLGSPSSLSPFSKRIKLEK
EFDLPPAAMPNTENVYSQWLAGYAASRQLKDPFLTFGDSRQSPFASSSEHSSENGSLRFSTPPG
ELDGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGER
PYKCELCNYACAQSSKLTRHMKTHGQVGKDVYKCEICKMPFSVYSTLEKHMKKWHSDRVLNNDI
KTE

hide sequence

RefSeq Acc Id:	XP_006251650 ⟸ XM_006251588
- Peptide Label:	isoform X3
- UniProtKB:	D3ZSY3 (UniProtKB/TrEMBL), A6JQ83 (UniProtKB/TrEMBL), A0A8I6ATN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFI EHKRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIA DKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNT HGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPSLHGIPIADNNPFNLLRIPGSVSREASGLAE GRFPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLR ELAGNTSSPPLSPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGK TFKFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSP EPGTSDLVGSASSALKSVVAKFKSENDPNLIPENGDEEEEEDDEEEEEEEEEEEEELTESERVD YGFGLSLEAARHHENSSRGAVVGVGDEGRALPDVMQGMVLSSMQHFSEAFHQVLGEKHKRSHLA EAEGHRDTCDEDSVAGESDRIDDGTVNGRGCSPGESASGGLSKKLLLGSPSSLSPFSKRIKLEK EFDLPPAAMPNTENVYSQWLAGYAASRQLKDPFLTFGDSRQSPFASSSEHSSENGSLRFSTPPG ELDGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRRSDTCPSHTPVRRSTPRAQDVWQFSDGSS RAPKF hide sequence

RefSeq Acc Id:	XP_006251656 ⟸ XM_006251594
- Peptide Label:	isoform X10
- UniProtKB:	Q5RJJ9 (UniProtKB/TrEMBL), B0BN54 (UniProtKB/TrEMBL), A0A0G2K4M7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFI EHKRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIA DKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNT HGLRIYLESEHGSPLTPRVLHTPPFGVVPRELRMCGSFRMEAQEPLSSEKL hide sequence

RefSeq Acc Id:	XP_017454745 ⟸ XM_017599256
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLLHLSRVGCSLGIEYFSLWALELVTHFRSSPALARCGALPLPTPAHLSLAALPRPHSHRPRR IQSRRGARRCEVTARPAEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEH KRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADK LLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHG LRIYLESEHGSPLTPRVGIPSGLGAECPSQPSLHGIPIADNNPFNLLRIPGSVSREASGLAEGR FPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRVLRLNPMAMEPPAMDFSRRLREL AGNTSSPPLSPGRPSPMQRLLQPFQPGSKPPFLATPPLPPLQSAPPPSQPPVKSKSCEFCGKTF KFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKLKRHMKTHMHKSSPMTVKSDDGLSTASSPEP GTSDLVGSASSALKSVVAKFKSENDPNLIPENGDEEEEEDDEEEEEEEEEEEEELTESERVDYG FGLSLEAARHHENSSRGAVVGVGDEGRALPDVMQGMVLSSMQHFSEAFHQVLGEKHKRSHLAEA EGHRDTCDEDSVAGESDRIDDGTVNGRGCSPGESASGGLSKKLLLGSPSSLSPFSKRIKLEKEF DLPPAAMPNTENVYSQWLAGYAASRQLKDPFLTFGDSRQSPFASSSEHSSENGSLRFSTPPGEL DGGISGRSGTGSGGSTPHISGPGPGRPSSKEGRRSDTCPSHTPVRRSTPRAQDVWQFSDGSSRA PKF hide sequence

RefSeq Acc Id:	XP_017454747 ⟸ XM_017599258
- Peptide Label:	isoform X9
- UniProtKB:	A6JQ84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLLHLSRVGCSLGIEYFSLWALELVTHFRSSPALARCGALPLPTPAHLSLAALPRPHSHRPRR IQSRRGARRCEVTARPAEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDILIFIEH KRKQCNGSLCLEKGVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGICPKQEHIADK LLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFTSAWFLLQHAQNTHG LRIYLESEHGSPLTPRVLHTPPFGVVPRELRMCGSFRMEAQEPLSSEKL hide sequence

RefSeq Acc Id:

ENSRNOP00000009421 ⟸ ENSRNOT00000009421

RefSeq Acc Id:

ENSRNOP00000073102 ⟸ ENSRNOT00000083146

RefSeq Acc Id:	XP_038948033 ⟸ XM_039092105
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948034 ⟸ XM_039092106
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948032 ⟸ XM_039092104
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AXE0 (UniProtKB/TrEMBL), A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948040 ⟸ XM_039092112
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948035 ⟸ XM_039092107
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038948037 ⟸ XM_039092109
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948036 ⟸ XM_039092108
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6ATN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948038 ⟸ XM_039092110
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSRNOP00000091732 ⟸ ENSRNOT00000102043

RefSeq Acc Id:

ENSRNOP00000093688 ⟸ ENSRNOT00000106316

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZSY3-F1-model_v2	AlphaFold	D3ZSY3	1-835	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699535

Promoter ID:

EPDNEW_R10050

Type:

multiple initiation site

Name:

Bcl11a_1

Description:

B-cell CLL/lymphoma 11A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	108,826,812 - 108,826,872	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309923	AgrOrtholog
BioCyc Gene	G2FUF-14756	BioCyc
Ensembl Genes	ENSRNOG00000007049	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009421	ENTREZGENE
	ENSRNOT00000009421.7	UniProtKB/TrEMBL
	ENSRNOT00000083146	ENTREZGENE
	ENSRNOT00000083146.2	UniProtKB/TrEMBL
	ENSRNOT00000102043.1	UniProtKB/TrEMBL
	ENSRNOT00000106316	ENTREZGENE
	ENSRNOT00000106316.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8375842	IMAGE-MGC_LOAD
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:305589	UniProtKB/TrEMBL
MGC_CLONE	MGC:187706	IMAGE-MGC_LOAD
NCBI Gene	305589	ENTREZGENE
PANTHER	B-CELL LYMPHOMA/LEUKEMIA 11	UniProtKB/TrEMBL
	B-CELL LYMPHOMA/LEUKEMIA 11A	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Bcl11a	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007049	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K4M7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATN1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AXE0	ENTREZGENE, UniProtKB/TrEMBL
	A6JQ83	ENTREZGENE, UniProtKB/TrEMBL
	A6JQ84	ENTREZGENE, UniProtKB/TrEMBL
	B0BN54	ENTREZGENE, UniProtKB/TrEMBL
	D3ZSY3	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJJ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-11-28	Bcl11a	BCL11 transcription factor A	Bcl11a	BAF chromatin remodeling complex subunit BCL11A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2019-04-02	Bcl11a	BAF chromatin remodeling complex subunit BCL11A	Bcl11a	BCL11A, BAF complex component	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2018-11-09	Bcl11a	BCL11A, BAF complex component	Bcl11a	B-cell CLL/lymphoma 11A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-13	Bcl11a	B-cell CLL/lymphoma 11A	Bcl11a	B-cell CLL/lymphoma 11A (zinc finger protein)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Bcl11a	B-cell CLL/lymphoma 11A (zinc finger protein)	Bcl11a_predicted	B-cell CLL/lymphoma 11A (zinc finger protein) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Bcl11a_predicted	B-cell CLL/lymphoma 11A (zinc finger protein) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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