Bcl11a (BAF chromatin remodeling complex subunit BCL11A) - Rat Genome Database

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Gene: Bcl11a (BAF chromatin remodeling complex subunit BCL11A) Chinchilla lanigera
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Symbol: Bcl11a
Name: BAF chromatin remodeling complex subunit BCL11A
RGD ID: 8909288
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein heterodimerization activity (ortholog); protein kinase binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cellular response to L-glutamate (ortholog); negative regulation of branching morphogenesis of a nerve (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); apraxia (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: B cell CLL/lymphoma 11A; B-cell CLL/lymphoma 11A; B-cell CLL/lymphoma 11A (zinc finger protein); B-cell lymphoma/leukemia 11A; BCL11A, BAF complex component
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542423,233,523 - 23,330,679 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542423,233,523 - 23,330,679 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Bcl11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542423,233,523 - 23,330,679 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542423,233,523 - 23,330,679 (+)NCBIChiLan1.0ChiLan1.0
BCL11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl260,450,520 - 60,554,467 (-)EnsemblGRCh38hg38GRCh38
GRCh38260,450,520 - 60,553,654 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37260,677,655 - 60,780,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36260,531,806 - 60,634,137 (-)NCBINCBI36hg18NCBI36
Build 34260,589,952 - 60,692,284NCBI
Celera260,521,903 - 60,624,215 (-)NCBI
Cytogenetic Map2p16.1NCBI
HuRef260,420,518 - 60,522,477 (-)NCBIHuRef
CHM1_1260,608,322 - 60,710,989 (-)NCBICHM1_1
Bcl11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391124,026,498 - 24,123,558 (+)NCBIGRCm39mm39
GRCm39 Ensembl1124,028,056 - 24,124,123 (+)Ensembl
GRCm381124,076,564 - 24,173,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1124,078,056 - 24,174,123 (+)EnsemblGRCm38mm10GRCm38
MGSCv371123,978,056 - 24,073,558 (+)NCBIGRCm37mm9NCBIm37
MGSCv361123,978,117 - 24,073,194 (+)NCBImm8
Celera1126,200,322 - 26,297,352 (+)NCBICelera
Cytogenetic Map11A3.2NCBI
Bcl11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21498,029,018 - 98,124,181 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl14108,826,831 - 108,921,669 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.014108,826,717 - 108,921,197 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014108,546,630 - 108,641,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414105,002,744 - 105,088,365 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114105,021,975 - 105,116,487 (+)NCBI
Celera1496,996,223 - 97,081,419 (+)NCBICelera
Cytogenetic Map14q22NCBI
BCL11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A61,695,613 - 61,795,818 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A61,695,613 - 61,795,800 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A60,552,908 - 60,655,437 (-)NCBIMhudiblu_PPA_v0panPan3
BCL11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11060,589,298 - 60,691,997 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1060,589,708 - 60,689,073 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1060,476,758 - 60,576,928 (-)NCBI
ROS_Cfam_1.01061,594,834 - 61,695,110 (-)NCBI
UMICH_Zoey_3.11061,295,070 - 61,395,145 (-)NCBI
UNSW_CanFamBas_1.01061,582,263 - 61,682,432 (-)NCBI
UU_Cfam_GSD_1.01061,874,607 - 61,974,801 (-)NCBI
Bcl11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629222,453,189 - 22,549,575 (+)NCBI
SpeTri2.0NW_0049364916,021,340 - 6,118,103 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCL11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl381,196,294 - 81,296,165 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1381,195,217 - 81,296,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2385,284,350 - 85,384,809 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCL11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11446,453,102 - 46,553,802 (+)NCBI
Vero_WHO_p1.0NW_02366604565,253,058 - 65,353,332 (-)NCBI
Bcl11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248331,367,878 - 1,468,257 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013447   ⟹   ENSCLAP00000013295
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542423,233,523 - 23,326,625 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013448   ⟹   ENSCLAP00000013296
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542423,234,013 - 23,330,679 (+)Ensembl
RefSeq Acc Id: XM_005385757   ⟹   XP_005385814
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,234,013 - 23,330,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514702   ⟹   XP_013370156
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,234,354 - 23,326,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514703   ⟹   XP_013370157
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,233,523 - 23,326,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514704   ⟹   XP_013370158
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,234,354 - 23,326,639 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514705   ⟹   XP_013370159
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,236,711 - 23,330,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514707   ⟹   XP_013370161
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,241,648 - 23,330,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514708   ⟹   XP_013370162
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,234,354 - 23,330,679 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514709   ⟹   XP_013370163
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542423,234,354 - 23,330,679 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005385814   ⟸   XM_005385757
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013370157   ⟸   XM_013514703
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370163   ⟸   XM_013514709
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_013370162   ⟸   XM_013514708
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013370156   ⟸   XM_013514702
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370158   ⟸   XM_013514704
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013370159   ⟸   XM_013514705
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013370161   ⟸   XM_013514707
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000013295   ⟸   ENSCLAT00000013447
RefSeq Acc Id: ENSCLAP00000013296   ⟸   ENSCLAT00000013448


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009184 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013295 ENTREZGENE
  ENSCLAP00000013296 ENTREZGENE
Ensembl Transcript ENSCLAT00000013447 ENTREZGENE
  ENSCLAT00000013448 ENTREZGENE
NCBI Gene Bcl11a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Bcl11a  BAF chromatin remodeling complex subunit BCL11A    BCL11A, BAF complex component  Symbol and/or name change 5135510 APPROVED
2018-11-06 Bcl11a  BCL11A, BAF complex component    B cell CLL/lymphoma 11A  Symbol and/or name change 5135510 APPROVED
2017-12-19 Bcl11a  B cell CLL/lymphoma 11A    B-cell CLL/lymphoma 11A  Symbol and/or name change 5135510 APPROVED
2016-08-03 Bcl11a  B-cell CLL/lymphoma 11A    B-cell CLL/lymphoma 11A (zinc finger protein)  Symbol and/or name change 5135510 APPROVED