Slc4a2 (solute carrier family 4 (anion exchanger), member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc4a2 (solute carrier family 4 (anion exchanger), member 2) Mus musculus
Analyze
Symbol: Slc4a2
Name: solute carrier family 4 (anion exchanger), member 2
RGD ID: 11311
MGI Page MGI
Description: Enables chloride transmembrane transporter activity. Involved in amelogenesis; chloride transport; and positive regulation of enamel mineralization. Located in basolateral plasma membrane. Is expressed in brain and cornea. Orthologous to human SLC4A2 (solute carrier family 4 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ae; AE 2; Ae2; anion exchange protein 2; anion exchanger 2; anion exchanger 2 type b1; anion exchanger 2 type b2; anion exchanger 2 type c1; anion exchanger 2 type c2; B3; B3RP; band 3-related protein; erythrocyte membrane protein band 3-like; non-erythroid band 3-like protein; solute carrier family 4 member 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,628,939 - 24,645,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,628,835 - 24,645,948 (+)EnsemblGRCm39 Ensembl
GRCm38524,423,761 - 24,440,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,423,837 - 24,440,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37523,931,050 - 23,946,765 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,935,384 - 23,951,010 (+)NCBIMGSCv36mm8
Celera521,375,044 - 21,390,745 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Hepatic cystogenesis is associated with abnormal expression and location of ion transporters and water channels in an animal model of autosomal recessive polycystic kidney disease. Banales JM, etal., Am J Pathol. 2008 Dec;173(6):1637-46. Epub 2008 Nov 6.
2. Effect of prediabetes on membrane bicarbonate transporters in testis and epididymis. Bernardino RL, etal., J Membr Biol. 2013 Dec;246(12):877-83. doi: 10.1007/s00232-013-9601-4. Epub 2013 Oct 9.
3. cDNA cloning and tissue distribution of mRNAs for two proteins that are related to the band 3 Cl-/HCO3- exchanger. Kudrycki KE, etal., J Biol Chem 1990 Jan 5;265(1):462-71.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Vacuolar H+-ATPase expression is increased in acid-secreting intercalated cells in kidneys of rats with hypercalcaemia-induced alkalosis. Wang W, etal., Acta Physiol (Oxf). 2007 Apr;189(4):359-68.
Additional References at PubMed
PMID:3020980   PMID:3182834   PMID:7592657   PMID:7894173   PMID:8756692   PMID:9027488   PMID:9486231   PMID:9621277   PMID:10349636   PMID:10491632   PMID:10922068   PMID:11006093  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:12145806   PMID:12477932   PMID:12958022   PMID:14592810   PMID:14610273   PMID:14673081   PMID:15007064   PMID:15123620   PMID:15452108  
PMID:15684419   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16286476   PMID:16816370   PMID:17056673   PMID:17151600   PMID:17492309   PMID:17690150   PMID:17890222   PMID:17967808  
PMID:18042363   PMID:18192337   PMID:18319251   PMID:18362326   PMID:18471521   PMID:18971331   PMID:19103596   PMID:19164575   PMID:19448635   PMID:19564250   PMID:19823673   PMID:20110461  
PMID:20929715   PMID:21267068   PMID:21677750   PMID:21705333   PMID:21873635   PMID:22245629   PMID:23341620   PMID:24361611   PMID:24515893   PMID:25012520   PMID:25745107   PMID:26110920  
PMID:26273529   PMID:26396175   PMID:26403673   PMID:26542396   PMID:27391897   PMID:27592379   PMID:27744011   PMID:30550785   PMID:32325033   PMID:32554809   PMID:33526661   PMID:33727633  
PMID:35110543  


Genomics

Comparative Map Data
Slc4a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,628,939 - 24,645,945 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,628,835 - 24,645,948 (+)EnsemblGRCm39 Ensembl
GRCm38524,423,761 - 24,440,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,423,837 - 24,440,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37523,931,050 - 23,946,765 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,935,384 - 23,951,010 (+)NCBIMGSCv36mm8
Celera521,375,044 - 21,390,745 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.74NCBI
SLC4A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,058,200 - 151,076,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7151,057,210 - 151,076,526 (+)EnsemblGRCh38hg38GRCh38
GRCh377150,755,287 - 150,773,614 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,387,590 - 150,404,547 (+)NCBINCBI36Build 36hg18NCBI36
Build 347150,194,386 - 150,211,257NCBI
Celera7145,313,966 - 145,330,946 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,567,635 - 144,585,988 (+)NCBIHuRef
CHM1_17150,763,647 - 150,782,011 (+)NCBICHM1_1
T2T-CHM13v2.07152,231,288 - 152,249,645 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,084,838 - 150,103,154 (+)NCBI
Slc4a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2410,736,419 - 10,754,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,736,425 - 10,752,965 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,882,663 - 15,899,242 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0411,702,854 - 11,719,435 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0410,054,638 - 10,071,219 (-)NCBIRnor_WKY
Rnor_6.047,264,677 - 7,282,355 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,264,683 - 7,281,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,276,041 - 7,294,088 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,100,783 - 6,117,982 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.146,100,782 - 6,117,982 (-)NCBI
Celera46,350,986 - 6,367,533 (-)NCBICelera
Cytogenetic Map4q11NCBI
Slc4a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554915,499,033 - 5,517,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554915,498,472 - 5,513,389 (+)NCBIChiLan1.0ChiLan1.0
SLC4A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17154,799,256 - 154,815,919 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7154,799,256 - 154,815,919 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07142,646,413 - 142,663,376 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC4A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,111,078 - 15,126,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,111,116 - 15,126,617 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1615,719,293 - 15,734,862 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01616,833,273 - 16,848,983 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1616,833,256 - 16,848,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,205,711 - 15,221,294 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01615,787,162 - 15,802,688 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,837,873 - 15,853,424 (+)NCBIUU_Cfam_GSD_1.0
Slc4a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,403,528 - 6,418,117 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365276,485,566 - 6,499,901 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl186,149,459 - 6,165,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1186,149,459 - 6,166,622 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,513,563 - 6,532,069 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,240,352 - 119,258,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,241,490 - 119,263,193 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,211,406 - 15,229,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248005,545,380 - 5,560,789 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
Slc4a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5A3UniSTS
cM Map511.74UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904958Gmmq8_mgastrocnemius muscle mass QTL 8 (mouse)5129421124Mouse
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2850
Count of miRNA genes:647
Interacting mature miRNAs:839
Transcripts:ENSMUST00000080067, ENSMUST00000115047, ENSMUST00000115049, ENSMUST00000127315, ENSMUST00000132505, ENSMUST00000136440, ENSMUST00000139081, ENSMUST00000140722, ENSMUST00000141966, ENSMUST00000144305, ENSMUST00000146765, ENSMUST00000153274, ENSMUST00000155598, ENSMUST00000155636
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF255774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ110714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000080067   ⟹   ENSMUSP00000078972
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,630,230 - 24,645,948 (+)Ensembl
GRCm38.p6 Ensembl524,425,232 - 24,440,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115047   ⟹   ENSMUSP00000110699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,633,421 - 24,645,945 (+)Ensembl
GRCm38.p6 Ensembl524,428,423 - 24,440,947 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115049   ⟹   ENSMUSP00000110701
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,633,206 - 24,645,945 (+)Ensembl
GRCm38.p6 Ensembl524,428,208 - 24,440,947 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,628,851 - 24,635,147 (+)Ensembl
GRCm38.p6 Ensembl524,423,853 - 24,430,149 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132505
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,640,543 - 24,641,485 (+)Ensembl
GRCm38.p6 Ensembl524,435,545 - 24,436,487 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136440
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,633,261 - 24,634,836 (+)Ensembl
GRCm38.p6 Ensembl524,428,263 - 24,429,838 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139081
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,630,283 - 24,632,701 (+)Ensembl
GRCm38.p6 Ensembl524,425,285 - 24,427,703 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140722
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,644,744 - 24,645,570 (+)Ensembl
GRCm38.p6 Ensembl524,439,746 - 24,440,572 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141966   ⟹   ENSMUSP00000117215
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,628,857 - 24,634,880 (+)Ensembl
GRCm38.p6 Ensembl524,423,859 - 24,429,882 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144305
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,630,274 - 24,632,587 (+)Ensembl
GRCm38.p6 Ensembl524,425,276 - 24,427,589 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146765
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,636,334 - 24,639,350 (+)Ensembl
GRCm38.p6 Ensembl524,431,336 - 24,434,352 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153274   ⟹   ENSMUSP00000121652
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,628,835 - 24,632,610 (+)Ensembl
GRCm38.p6 Ensembl524,423,837 - 24,427,612 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155598   ⟹   ENSMUSP00000118473
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,631,829 - 24,634,850 (+)Ensembl
GRCm38.p6 Ensembl524,426,831 - 24,429,852 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155636
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,634,016 - 24,634,777 (+)Ensembl
GRCm38.p6 Ensembl524,429,018 - 24,429,779 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl524,641,758 - 24,644,254 (+)Ensembl
GRCm38.p6 Ensembl524,436,760 - 24,439,256 (+)Ensembl
RefSeq Acc Id: NM_001253892   ⟹   NP_001240821
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,630,842 - 24,645,945 (+)NCBI
GRCm38524,425,844 - 24,440,947 (+)NCBI
Celera521,375,044 - 21,390,745 (+)ENTREZGENE
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009207   ⟹   NP_033233
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,630,230 - 24,645,945 (+)NCBI
GRCm38524,425,232 - 24,440,947 (+)NCBI
MGSCv37523,931,050 - 23,946,765 (+)RGD
Celera521,375,044 - 21,390,745 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535650   ⟹   XP_006535713
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,628,939 - 24,645,945 (+)NCBI
GRCm38524,423,761 - 24,440,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535651   ⟹   XP_006535714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,629,064 - 24,645,945 (+)NCBI
GRCm38524,423,819 - 24,440,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535653   ⟹   XP_006535716
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,630,235 - 24,645,945 (+)NCBI
GRCm38524,425,237 - 24,440,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535655   ⟹   XP_006535718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,633,167 - 24,645,945 (+)NCBI
GRCm38524,428,148 - 24,440,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535656   ⟹   XP_006535719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,633,327 - 24,645,945 (+)NCBI
GRCm38524,428,303 - 24,440,947 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164938   ⟹   XP_036020831
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39524,633,255 - 24,645,945 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001240821 (Get FASTA)   NCBI Sequence Viewer  
  NP_033233 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535713 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535714 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535716 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535718 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535719 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020831 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA65505 (Get FASTA)   NCBI Sequence Viewer  
  AAB92413 (Get FASTA)   NCBI Sequence Viewer  
  AAB92414 (Get FASTA)   NCBI Sequence Viewer  
  AAB92415 (Get FASTA)   NCBI Sequence Viewer  
  AAG23154 (Get FASTA)   NCBI Sequence Viewer  
  AAG23155 (Get FASTA)   NCBI Sequence Viewer  
  AAG23156 (Get FASTA)   NCBI Sequence Viewer  
  AAG23157 (Get FASTA)   NCBI Sequence Viewer  
  AAG23158 (Get FASTA)   NCBI Sequence Viewer  
  AAH02234 (Get FASTA)   NCBI Sequence Viewer  
  AAH54102 (Get FASTA)   NCBI Sequence Viewer  
  BAE26761 (Get FASTA)   NCBI Sequence Viewer  
  BAE28183 (Get FASTA)   NCBI Sequence Viewer  
  EDL03120 (Get FASTA)   NCBI Sequence Viewer  
  EDL03121 (Get FASTA)   NCBI Sequence Viewer  
  EDL03122 (Get FASTA)   NCBI Sequence Viewer  
  EDL03123 (Get FASTA)   NCBI Sequence Viewer  
  EDL03124 (Get FASTA)   NCBI Sequence Viewer  
  EDL03125 (Get FASTA)   NCBI Sequence Viewer  
  P13808 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_033233   ⟸   NM_009207
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   Q3UKP0 (UniProtKB/TrEMBL),   Q7TPS4 (UniProtKB/TrEMBL),   A0A0R4J101 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001240821   ⟸   NM_001253892
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   Q3UKP0 (UniProtKB/TrEMBL),   Q7TPS4 (UniProtKB/TrEMBL),   A0A0R4J101 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535713   ⟸   XM_006535650
- Peptide Label: isoform X1
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   A0A0R4J101 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535714   ⟸   XM_006535651
- Peptide Label: isoform X1
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   A0A0R4J101 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535716   ⟸   XM_006535653
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006535718   ⟸   XM_006535655
- Peptide Label: isoform X4
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   A0A0R4J1K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535719   ⟸   XM_006535656
- Peptide Label: isoform X5
- UniProtKB: P13808 (UniProtKB/Swiss-Prot),   A0A0R4J1K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000110701   ⟸   ENSMUST00000115049
RefSeq Acc Id: ENSMUSP00000110699   ⟸   ENSMUST00000115047
RefSeq Acc Id: ENSMUSP00000121652   ⟸   ENSMUST00000153274
RefSeq Acc Id: ENSMUSP00000078972   ⟸   ENSMUST00000080067
RefSeq Acc Id: ENSMUSP00000118473   ⟸   ENSMUST00000155598
RefSeq Acc Id: ENSMUSP00000117215   ⟸   ENSMUST00000141966
RefSeq Acc Id: XP_036020831   ⟸   XM_036164938
- Peptide Label: isoform X3
Protein Domains
Band_3_cyto   HCO3_cotransp

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P13808-F1-model_v2 AlphaFold P13808 1-1237 view protein structure

Promoters
RGD ID:6837241
Promoter ID:MM_KWN:41604
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000030814,   NM_007668,   OTTMUST00000059118,   OTTMUST00000059119,   OTTMUST00000059120
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,929,231 - 23,929,852 (-)MPROMDB
RGD ID:6838373
Promoter ID:MM_KWN:41605
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059116,   OTTMUST00000059121,   OTTMUST00000059123
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,930,211 - 23,931,437 (+)MPROMDB
RGD ID:6838375
Promoter ID:MM_KWN:41606
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_2Hour,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000059122
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,932,246 - 23,932,746 (+)MPROMDB
RGD ID:6838378
Promoter ID:MM_KWN:41607
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000059117,   OTTMUST00000059124,   OTTMUST00000059125,   OTTMUST00000059126
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,934,121 - 23,935,272 (+)MPROMDB
RGD ID:6838377
Promoter ID:MM_KWN:41608
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:OTTMUST00000059127
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,936,651 - 23,937,262 (+)MPROMDB
RGD ID:6848832
Promoter ID:MM_TRO:7368
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:MTR007701.5.363.11
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,939,756 - 23,940,256 (+)MPROMDB
RGD ID:6838379
Promoter ID:MM_KWN:41609
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Spleen
Transcripts:OTTMUST00000059128
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,940,429 - 23,940,929 (+)MPROMDB
RGD ID:6838381
Promoter ID:MM_KWN:41610
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059129
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36523,944,651 - 23,946,057 (+)MPROMDB
RGD ID:6886140
Promoter ID:EPDNEW_M6521
Type:multiple initiation site
Name:Slc4a2_1
Description:Mus musculus solute carrier family 4 , member 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6522  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38524,425,276 - 24,425,336EPDNEW
RGD ID:6886142
Promoter ID:EPDNEW_M6522
Type:single initiation site
Name:Slc4a2_2
Description:Mus musculus solute carrier family 4 , member 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6521  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38524,427,508 - 24,427,568EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109351 AgrOrtholog
Ensembl Genes ENSMUSG00000028962 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000078972 ENTREZGENE
  ENSMUSP00000078972.7 UniProtKB/TrEMBL
  ENSMUSP00000110699 ENTREZGENE
  ENSMUSP00000110699.3 UniProtKB/TrEMBL
  ENSMUSP00000110701 ENTREZGENE
  ENSMUSP00000110701.3 UniProtKB/TrEMBL
  ENSMUSP00000117215.2 UniProtKB/TrEMBL
  ENSMUSP00000118473.2 UniProtKB/TrEMBL
  ENSMUSP00000121652.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080067 ENTREZGENE
  ENSMUST00000080067.13 UniProtKB/TrEMBL
  ENSMUST00000115047 ENTREZGENE
  ENSMUST00000115047.3 UniProtKB/TrEMBL
  ENSMUST00000115049 ENTREZGENE
  ENSMUST00000115049.9 UniProtKB/TrEMBL
  ENSMUST00000141966.8 UniProtKB/TrEMBL
  ENSMUST00000153274.2 UniProtKB/TrEMBL
  ENSMUST00000155598.8 UniProtKB/TrEMBL
Gene3D-CATH 3.40.930.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Anion_exchange UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Anion_exchange_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Anion_exchange_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Band3_cytoplasmic_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20535 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109351 ENTREZGENE
NCBI Gene 20535 ENTREZGENE
PANTHER PTHR11453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11453:SF14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc4a2 PhenoGen
PRINTS ANIONEXCHNGR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANIONEXHNGR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANION_EXCHANGER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANION_EXCHANGER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs TIGR00834 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J101 ENTREZGENE, UniProtKB/TrEMBL
  A0A0R4J1K4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0R4J1K9 ENTREZGENE, UniProtKB/TrEMBL
  A0A1C7ZN01_MOUSE UniProtKB/TrEMBL
  B3A2_MOUSE UniProtKB/Swiss-Prot
  D3YUF1_MOUSE UniProtKB/TrEMBL
  D3Z5G3_MOUSE UniProtKB/TrEMBL
  P13808 ENTREZGENE
  Q3UGM4_MOUSE UniProtKB/TrEMBL
  Q3UKP0 ENTREZGENE, UniProtKB/TrEMBL
  Q7TPS4 ENTREZGENE, UniProtKB/TrEMBL
  Q99LT5_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9ES09 UniProtKB/Swiss-Prot
  Q9ES10 UniProtKB/Swiss-Prot
  Q9ES11 UniProtKB/Swiss-Prot
  Q9ES12 UniProtKB/Swiss-Prot
  Q9ES13 UniProtKB/Swiss-Prot