Foxn1 (forkhead box N1) - Rat Genome Database

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Gene: Foxn1 (forkhead box N1) Mus musculus
Analyze
Symbol: Foxn1
Name: forkhead box N1
RGD ID: 11489
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including hematopoietic or lymphoid organ development; lymphoid lineage cell migration into thymus; and regulation of positive thymic T cell selection. Acts upstream of or within several processes, including nail development; regulation of T cell differentiation in thymus; and skin development. Predicted to be located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; integumental system; male reproductive gland or organ; and thymus. Used to study DiGeorge syndrome and T-cell immunodeficiency, congenital alopecia, and nail dystrophy. Human ortholog(s) of this gene implicated in T-cell immunodeficiency, congenital alopecia, and nail dystrophy; alopecia; nail disease; and primary immunodeficiency disease. Orthologous to human FOXN1 (forkhead box N1).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: D11Bhm185e; Fkh19; forkhead box protein N1; hepatocyte nuclear factor 3 forkhead homolog 11; HFH-11; Hfh11; HNF-3/forkhead homolog 11; MGC124316; MGC124317; nu; nude; wh; Whn; winged-helix transcription factor nude
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,248,403 - 78,277,597 (-)NCBIGRCm39mm39
GRCm39 Ensembl1178,248,403 - 78,277,384 (-)Ensembl
GRCm381178,357,577 - 78,386,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,357,577 - 78,386,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,171,790 - 78,200,060 (-)NCBIGRCm37mm9NCBIm37
MGSCv361178,174,483 - 78,202,753 (-)NCBImm8
Celera1187,990,370 - 88,018,640 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal CD4-positive, alpha beta T cell morphology  (IAGP)
abnormal CD8-positive, alpha beta T cell morphology  (IAGP)
abnormal circulating cytokine level  (IAGP)
abnormal circulating gonadotropin level  (IAGP)
abnormal coat/ hair morphology  (IAGP)
abnormal compact bone morphology  (IAGP)
abnormal corneocyte morphology  (IAGP)
abnormal cutaneous collagen fibril morphology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal epidermis stratum granulosum morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal hair cortex keratinization  (IAGP)
abnormal hair cortex morphology  (IAGP)
abnormal hair cuticle  (IAGP)
abnormal hair follicle bulb morphology  (IEA)
abnormal hair follicle development  (IAGP)
abnormal hair follicle inner root sheath morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair growth  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal humoral immune response  (IEA)
abnormal immune system cell morphology  (IEA)
abnormal immune system morphology  (IEA)
abnormal immune system organ morphology  (IEA)
abnormal immune system physiology  (IEA)
abnormal leukocyte cell number  (IAGP)
abnormal liver morphology  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal lymph node T cell domain morphology  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal nail bed morphology  (IAGP)
abnormal nail matrix morphology  (IAGP)
abnormal nail morphology  (IAGP)
abnormal nail plate morphology  (IAGP)
abnormal Peyer's patch germinal center morphology  (IAGP)
abnormal Peyer's patch morphology  (IAGP)
abnormal positive T cell selection  (IAGP)
abnormal response/metabolism to endogenous compounds  (IAGP)
abnormal skin morphology  (IEA)
abnormal skin pigmentation  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen physiology  (IAGP)
abnormal splenic cell ratio  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal third pharyngeal pouch morphology  (IAGP)
abnormal thymus cell ratio  (IAGP)
abnormal thymus cortex morphology  (IAGP)
abnormal thymus corticomedullary boundary morphology  (IAGP)
abnormal thymus development  (IAGP)
abnormal thymus epithelium morphology  (IAGP)
abnormal thymus involution  (IAGP)
abnormal thymus medulla morphology  (IAGP)
abnormal thymus morphology  (IAGP)
abnormal thymus physiology  (IAGP)
abnormal trabecular bone morphology  (IAGP)
abnormal venule morphology  (IAGP)
abnormal vibrissa morphology  (IEA)
absent B cells  (IAGP)
absent lymph nodes  (IAGP)
absent Peyer's patches  (IAGP)
absent spleen  (IAGP)
absent T cells  (IAGP)
absent thymus cortex  (IAGP)
absent thymus medulla  (IAGP)
absent vibrissae  (IAGP)
ascites  (IAGP)
asthenozoospermia  (IAGP)
athymia  (IAGP)
blepharitis  (IAGP)
brittle hair  (IEA)
cachexia  (IEA)
chromosomal instability  (IAGP)
coiled sperm flagellum  (IAGP)
corneal vascularization  (IAGP)
curly vibrissae  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased CD4-positive, alpha beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased circulating alanine transaminase level  (IAGP)
decreased circulating follicle stimulating hormone level  (IAGP)
decreased circulating interleukin-2 level  (IAGP)
decreased circulating interleukin-6 level  (IAGP)
decreased circulating luteinizing hormone level  (IAGP)
decreased circulating tumor necrosis factor level  (IAGP)
decreased double-negative T cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased gamma-delta intraepithelial T cell number  (IAGP)
decreased immunoglobulin level  (IEA)
decreased incidence of tumors by chemical induction  (IAGP)
decreased inflammatory response  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased lean body mass  (IEA)
decreased leukocyte cell number  (IAGP)
decreased litter size  (IEA)
decreased lymphocyte cell number  (IAGP)
decreased lymphoma incidence  (IEA)
decreased metastatic potential  (IAGP)
decreased single-positive T cell number  (IAGP)
decreased skeletal muscle fiber size  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased susceptibility to bacterial infection  (IAGP)
decreased susceptibility to parasitic infection  (IAGP)
decreased susceptibility to Retroviridae infection  (IAGP)
decreased T cell number  (IAGP)
decreased thymocyte number  (IAGP)
decreased thymus weight  (IAGP)
decreased tumor incidence  (IAGP)
deformed nails  (IAGP)
female infertility  (IAGP)
hairless  (IAGP)
hydrometra  (IEA)
impaired spatial learning  (IAGP)
increased B cell number  (IAGP)
increased bone mineral density  (IAGP)
increased DN1 thymic pro-T cell number  (IAGP)
increased double-positive T cell number  (IAGP)
increased eosinophil cell number  (IEA)
increased erythroid progenitor cell number  (IAGP)
increased granulocyte number  (IEA)
increased IgA level  (IAGP)
increased immature B cell number  (IAGP)
increased incidence of corneal inflammation  (IAGP)
increased length of allograft survival  (IAGP)
increased neutrophil cell number  (IEA)
increased or absent threshold for auditory brainstem response  (IEA)
increased plasmacytoma incidence  (IAGP)
increased sarcoma incidence  (IEA)
increased skeletal muscle fiber size  (IAGP)
increased susceptibility to Herpesvirales infection  (IAGP)
increased susceptibility to Herpesvirales infection induced morbidity/mortality  (IAGP)
increased susceptibility to induced arthritis  (IAGP)
increased T cell number  (IAGP)
increased thymocyte apoptosis  (IAGP)
increased total body fat amount  (IEA)
infertility  (IAGP)
lymph node hypoplasia  (IEA)
nail dystrophy  (IAGP)
no abnormal phenotype detected  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
reduced female fertility  (IEA)
reduced hair shaft melanin granule number  (IAGP)
reduced male fertility  (IAGP)
short nails  (IAGP)
short vibrissae  (IAGP)
small ovary  (IAGP)
small spleen  (IAGP)
small superior vagus ganglion  (IEA)
small thymus  (IAGP)
sparse vibrissae  (IEA)
spleen hypoplasia  (IEA)
thin skin  (IAGP)
thrombocytosis  (IAGP)
thymus atrophy  (IAGP)
thymus cysts  (IAGP)
thymus hyperplasia  (IAGP)
thymus hypoplasia  (IAGP)
underdeveloped hair follicles  (IAGP)
wavy vibrissae  (IAGP)
wrinkled skin  (IEA)
References

Additional References at PubMed
PMID:361546   PMID:427772   PMID:446837   PMID:571405   PMID:596425   PMID:721133   PMID:788248   PMID:978133   PMID:1104226   PMID:1201223   PMID:1232463   PMID:1287512  
PMID:1312899   PMID:1346798   PMID:1357752   PMID:1385525   PMID:1420029   PMID:1472018   PMID:1592442   PMID:1632468   PMID:1639500   PMID:1729694   PMID:1747884   PMID:1793459  
PMID:1970153   PMID:2196000   PMID:2288204   PMID:2543745   PMID:3049314   PMID:3089990   PMID:3093247   PMID:3494779   PMID:3553324   PMID:3965401   PMID:4007044   PMID:4202946  
PMID:4547146   PMID:4583780   PMID:4597815   PMID:4824478   PMID:4827351   PMID:4929778   PMID:5017366   PMID:5428870   PMID:5493276   PMID:5639157   PMID:5784127   PMID:5980117  
PMID:6231241   PMID:6413585   PMID:6698273   PMID:6819011   PMID:6940949   PMID:6966611   PMID:6971254   PMID:7009414   PMID:7207482   PMID:7405870   PMID:7490093   PMID:7513463  
PMID:7519204   PMID:7522212   PMID:7525646   PMID:7540608   PMID:7541491   PMID:7566442   PMID:7593323   PMID:7601457   PMID:7604876   PMID:7612702   PMID:7621864   PMID:7626882  
PMID:7636182   PMID:7636184   PMID:7666498   PMID:7697339   PMID:7717446   PMID:7718329   PMID:7733618   PMID:7734426   PMID:7751031   PMID:7751707   PMID:7760211   PMID:7769241  
PMID:7769315   PMID:7805935   PMID:7813814   PMID:7822016   PMID:7843786   PMID:7869039   PMID:7875225   PMID:7875735   PMID:7889411   PMID:7897237   PMID:7907272   PMID:7914549  
PMID:7917216   PMID:7923123   PMID:7925622   PMID:7948605   PMID:7954525   PMID:7969402   PMID:7989611   PMID:7989750   PMID:8018547   PMID:8026534   PMID:8090782   PMID:8097186  
PMID:8106147   PMID:8119666   PMID:8123597   PMID:8174136   PMID:8176263   PMID:8197166   PMID:8209400   PMID:8212584   PMID:8287617   PMID:8297111   PMID:8329195   PMID:8344343  
PMID:8402693   PMID:8413654   PMID:8422500   PMID:8423056   PMID:8435480   PMID:8473734   PMID:8480857   PMID:8488066   PMID:8495500   PMID:8500896   PMID:8609389   PMID:8629026  
PMID:8650163   PMID:8662231   PMID:8671685   PMID:8698382   PMID:8765030   PMID:8804315   PMID:8840139   PMID:8872993   PMID:8911134   PMID:8972687   PMID:9002021   PMID:9029130  
PMID:9032290   PMID:9067410   PMID:9098436   PMID:9108066   PMID:9119370   PMID:9130655   PMID:9164958   PMID:9276529   PMID:9321431   PMID:9328433   PMID:9432140   PMID:9441747  
PMID:9498115   PMID:9520289   PMID:9620300   PMID:9620592   PMID:9636152   PMID:9735600   PMID:9804998   PMID:9820492   PMID:9820556   PMID:9821307   PMID:10067206   PMID:10191051  
PMID:10202929   PMID:10319022   PMID:10328848   PMID:10348635   PMID:10374074   PMID:10419685   PMID:10447772   PMID:10510093   PMID:10553057   PMID:10559499   PMID:10559501   PMID:10570301  
PMID:10590269   PMID:10593511   PMID:10657301   PMID:10669641   PMID:10684864   PMID:10725718   PMID:10742152   PMID:10754100   PMID:10767081   PMID:10878619   PMID:10879739   PMID:10882606  
PMID:10898497   PMID:10925280   PMID:10951232   PMID:11034364   PMID:11035234   PMID:11038184   PMID:11093154   PMID:11259083   PMID:11275695   PMID:11292512   PMID:11292513   PMID:11318565  
PMID:11326425   PMID:11335122   PMID:11374417   PMID:11386760   PMID:11476574   PMID:11500834   PMID:11536157   PMID:11591113   PMID:11696572   PMID:11717453   PMID:11745356   PMID:11783999  
PMID:11841548   PMID:11884434   PMID:11922175   PMID:11932925   PMID:11940232   PMID:11976685   PMID:12016512   PMID:12070080   PMID:12207343   PMID:12351184   PMID:12379851   PMID:12471131  
PMID:12477932   PMID:12540779   PMID:12559173   PMID:12566417   PMID:12646651   PMID:12874207   PMID:12893877   PMID:12928418   PMID:14528302   PMID:14610273   PMID:14625409   PMID:14688066  
PMID:14766723   PMID:15141078   PMID:15292206   PMID:15514013   PMID:15531637   PMID:15578092   PMID:15581866   PMID:15610506   PMID:15611228   PMID:15618518   PMID:15680353   PMID:15694130  
PMID:15699117   PMID:15705807   PMID:15739220   PMID:15781870   PMID:15805259   PMID:15808517   PMID:15856015   PMID:15879130   PMID:15961541   PMID:15963482   PMID:15986478   PMID:16002694  
PMID:16068183   PMID:16095582   PMID:16111640   PMID:16141072   PMID:16169466   PMID:16210626   PMID:16232301   PMID:16286021   PMID:16317098   PMID:16418396   PMID:16424190   PMID:16444265  
PMID:16473832   PMID:16481417   PMID:16489021   PMID:16513945   PMID:16517216   PMID:16517733   PMID:16530750   PMID:16530850   PMID:16540644   PMID:16542175   PMID:16546101   PMID:16547234  
PMID:16602821   PMID:16641111   PMID:16704991   PMID:16709810   PMID:16791198   PMID:16808805   PMID:16809609   PMID:16818453   PMID:16885371   PMID:16888027   PMID:16904612   PMID:16935850  
PMID:16972005   PMID:17002560   PMID:17010584   PMID:17013389   PMID:17039258   PMID:17096403   PMID:17158094   PMID:17173138   PMID:17182555   PMID:17194734   PMID:17202317   PMID:17202344  
PMID:17222572   PMID:17259968   PMID:17274001   PMID:17297445   PMID:17316805   PMID:17353370   PMID:17382312   PMID:17392427   PMID:17438029   PMID:17459087   PMID:17495323   PMID:17577402  
PMID:17603058   PMID:17625108   PMID:17630353   PMID:17638899   PMID:17658280   PMID:17683113   PMID:17709488   PMID:17709499   PMID:17717199   PMID:17762882   PMID:17803914   PMID:17826032  
PMID:17880731   PMID:17891146   PMID:17919501   PMID:17938256   PMID:17967861   PMID:17982459   PMID:18056358   PMID:18064304   PMID:18178831   PMID:18196515   PMID:18227350   PMID:18245492  
PMID:18250439   PMID:18256193   PMID:18322181   PMID:18367674   PMID:18377420   PMID:18411339   PMID:18436651   PMID:18480165   PMID:18511699   PMID:18585375   PMID:18692037   PMID:18701890  
PMID:18703142   PMID:18716662   PMID:18757424   PMID:18768977   PMID:18824585   PMID:18832682   PMID:18978204   PMID:19029405   PMID:19054770   PMID:19103190   PMID:19135046   PMID:19164599  
PMID:19193947   PMID:19234195   PMID:19265126   PMID:19291701   PMID:19349693   PMID:19435813   PMID:19470461   PMID:19487675   PMID:19515997   PMID:19651258   PMID:19675579   PMID:19786540  
PMID:19843951   PMID:19853842   PMID:19855134   PMID:19855844   PMID:19918778   PMID:19955175   PMID:19956733   PMID:20007298   PMID:20019156   PMID:20023630   PMID:20043899   PMID:20052418  
PMID:20091929   PMID:20130231   PMID:20147963   PMID:20156205   PMID:20160032   PMID:20207969   PMID:20215519   PMID:20404100   PMID:20439541   PMID:20463654   PMID:20498049   PMID:20531304  
PMID:20534551   PMID:20584999   PMID:20616004   PMID:20634318   PMID:20708158   PMID:20733202   PMID:20823228   PMID:20971735   PMID:20971736   PMID:20976004   PMID:21041368   PMID:21048105  
PMID:21061433   PMID:21079757   PMID:21109991   PMID:21159660   PMID:21177346   PMID:21191399   PMID:21203493   PMID:21249177   PMID:21256057   PMID:21267068   PMID:21337465   PMID:21387539  
PMID:21401811   PMID:21464320   PMID:21512139   PMID:21526210   PMID:21539913   PMID:21555554   PMID:21559450   PMID:21576386   PMID:21724589   PMID:21862553   PMID:21873635   PMID:21874051  
PMID:21908422   PMID:22048767   PMID:22064482   PMID:22072979   PMID:22087235   PMID:22096586   PMID:22116821   PMID:22133876   PMID:22179202   PMID:22207734   PMID:22212899   PMID:22251703  
PMID:22275805   PMID:22281511   PMID:22343031   PMID:22403443   PMID:22464328   PMID:22474479   PMID:22514652   PMID:22542159   PMID:22589410   PMID:22665063   PMID:22724083   PMID:22737248  
PMID:22770663   PMID:22912418   PMID:22915756   PMID:22972926   PMID:23041971   PMID:23091413   PMID:23144170   PMID:23408840   PMID:23512990   PMID:23530123   PMID:23543756   PMID:23545296  
PMID:23570836   PMID:23603794   PMID:23669396   PMID:23671652   PMID:23687340   PMID:23750244   PMID:23761633   PMID:23843112   PMID:23846904   PMID:23867620   PMID:23881845   PMID:23885715  
PMID:23913124   PMID:23926322   PMID:23948297   PMID:23960238   PMID:24055110   PMID:24184560   PMID:24189145   PMID:24194600   PMID:24253447   PMID:24263106   PMID:24333537   PMID:24561455  
PMID:24610010   PMID:24662819   PMID:24715454   PMID:24748377   PMID:24753122   PMID:24828078   PMID:24879833   PMID:24882009   PMID:24952961   PMID:25053428   PMID:25093684   PMID:25117709  
PMID:25123133   PMID:25143585   PMID:25148026   PMID:25150981   PMID:25220576   PMID:25249461   PMID:25299782   PMID:25332287   PMID:25490449   PMID:25531271   PMID:25538079   PMID:25546423  
PMID:25614485   PMID:25917818   PMID:25977256   PMID:26006015   PMID:26038598   PMID:26059465   PMID:26120961   PMID:26223192   PMID:26255562   PMID:26257169   PMID:26352270   PMID:26410628  
PMID:26427556   PMID:26523865   PMID:26531897   PMID:26538393   PMID:26544942   PMID:26637788   PMID:26789017   PMID:26889835   PMID:26912704   PMID:26914657   PMID:26938103   PMID:26983083  
PMID:27022746   PMID:27053161   PMID:27068467   PMID:27234308   PMID:27280889   PMID:27292634   PMID:27357689   PMID:27396325   PMID:27401343   PMID:27548434   PMID:27633995   PMID:27641500  
PMID:27646003   PMID:27655131   PMID:27663899   PMID:27775074   PMID:27792745   PMID:27861793   PMID:27862634   PMID:27875549   PMID:27880796   PMID:27941786   PMID:27984728   PMID:28003381  
PMID:28068897   PMID:28071724   PMID:28096505   PMID:28176764   PMID:28336912   PMID:28371152   PMID:28377405   PMID:28508891   PMID:28546003   PMID:28642033   PMID:28658220   PMID:28701508  
PMID:28819138   PMID:28830910   PMID:28892064   PMID:28964716   PMID:28992076   PMID:29069604   PMID:29117183   PMID:29136505   PMID:29184034   PMID:29193031   PMID:29208932   PMID:29246442  
PMID:29335648   PMID:29440508   PMID:29462197   PMID:29615703   PMID:29727681   PMID:29858571   PMID:29946151   PMID:30008323   PMID:30022164   PMID:30174304   PMID:30256907   PMID:30366930  
PMID:30373854   PMID:30392957   PMID:30413481   PMID:30423296   PMID:30425120   PMID:30576655   PMID:30581152   PMID:30677043   PMID:30840882   PMID:30898894   PMID:30917317   PMID:30930146  
PMID:30968547   PMID:30982661   PMID:31017901   PMID:31036156   PMID:31092925   PMID:31243087   PMID:31285612   PMID:31316099   PMID:31399573   PMID:31412026   PMID:31433983   PMID:31447097  
PMID:31481626   PMID:31552487   PMID:31591568   PMID:31811821   PMID:31851932   PMID:31950264   PMID:31987884   PMID:32193336   PMID:32255245   PMID:32312982   PMID:32366944   PMID:32398640  
PMID:32467237   PMID:32467240   PMID:32730753   PMID:32839611   PMID:32891189   PMID:32960816   PMID:33369874   PMID:33475195   PMID:33608392  


Genomics

Comparative Map Data
Foxn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,248,403 - 78,277,597 (-)NCBIGRCm39mm39
GRCm39 Ensembl1178,248,403 - 78,277,384 (-)Ensembl
GRCm381178,357,577 - 78,386,783 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,357,577 - 78,386,558 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,171,790 - 78,200,060 (-)NCBIGRCm37mm9NCBIm37
MGSCv361178,174,483 - 78,202,753 (-)NCBImm8
Celera1187,990,370 - 88,018,640 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
FOXN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1728,506,243 - 28,538,900 (+)EnsemblGRCh38hg38GRCh38
GRCh381728,506,211 - 28,538,900 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371726,833,366 - 26,865,918 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,875,086 - 23,889,302 (+)NCBINCBI36hg18NCBI36
Build 341723,875,085 - 23,889,302NCBI
Celera1723,709,983 - 23,724,203 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1723,059,775 - 23,073,995 (+)NCBIHuRef
CHM1_11726,912,657 - 26,926,877 (+)NCBICHM1_1
Foxn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21063,251,400 - 63,273,710 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1063,251,400 - 63,273,710 (-)Ensembl
Rnor_6.01065,621,142 - 65,634,666 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,621,257 - 65,634,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,004,940 - 66,030,134 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,243,323 - 64,256,847 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1062,229,663 - 62,243,188 (-)NCBICelera
Cytogenetic Map10q25NCBI
Foxn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,611,087 - 4,627,113 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,611,246 - 4,640,606 (-)NCBIChiLan1.0ChiLan1.0
FOXN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,740,775 - 28,773,592 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,740,775 - 28,773,592 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01728,237,150 - 28,272,010 (-)NCBIMhudiblu_PPA_v0panPan3
FOXN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,734,228 - 42,749,856 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,735,656 - 42,748,632 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,878,088 - 41,906,518 (+)NCBI
ROS_Cfam_1.0943,540,303 - 43,568,825 (+)NCBI
UMICH_Zoey_3.1942,323,418 - 42,351,882 (+)NCBI
UNSW_CanFamBas_1.0942,615,833 - 42,644,325 (+)NCBI
UU_Cfam_GSD_1.0942,693,335 - 42,721,782 (+)NCBI
Foxn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,839,546 - 41,868,057 (+)NCBI
SpeTri2.0NW_0049365384,717,509 - 4,745,504 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,765,260 - 44,795,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,764,427 - 44,796,138 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,757,094 - 46,780,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,291,597 - 22,306,977 (+)NCBI
ChlSab1.1 Ensembl1622,292,330 - 22,305,968 (+)Ensembl
Vero_WHO_p1.0NW_0236660757,819,856 - 7,835,084 (-)NCBI
Foxn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247861,114,305 - 1,127,787 (+)NCBI

Position Markers
BB241108  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,358,086 - 78,358,222UniSTSGRCm38
MGSCv371178,171,588 - 78,171,724UniSTSGRCm37
Celera1187,990,168 - 87,990,304UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
Whitehead/MRC_RH111001.01UniSTS
X81593  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,358,403 - 78,358,564UniSTSGRCm38
MGSCv371178,171,905 - 78,172,066UniSTSGRCm37
Celera1187,990,485 - 87,990,646UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
Whitehead/MRC_RH11999.1UniSTS
Whitehead_YAC11 UniSTS
Foxn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,358,293 - 78,358,552UniSTSGRCm38
MGSCv371178,184,558 - 78,184,725UniSTSGRCm37
MGSCv371178,184,658 - 78,184,900UniSTSGRCm37
Celera1187,990,375 - 87,990,634UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
cM Map1145.0UniSTS
D11Seg20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,357,760 - 78,357,929UniSTSGRCm38
MGSCv371178,171,262 - 78,171,431UniSTSGRCm37
Celera1187,989,842 - 87,990,011UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
D11Seg19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,361,473 - 78,361,608UniSTSGRCm38
MGSCv371178,174,975 - 78,175,110UniSTSGRCm37
Celera1187,993,555 - 87,993,690UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
D11Seg23  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,384,240 - 78,384,551UniSTSGRCm38
MGSCv371178,197,742 - 78,198,053UniSTSGRCm37
Celera1188,016,322 - 88,016,633UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.02UniSTS
Foxn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,371,056 - 78,371,223UniSTSGRCm38
MGSCv371178,184,558 - 78,184,725UniSTSGRCm37
Celera1188,003,138 - 88,003,305UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
Foxn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,371,156 - 78,371,398UniSTSGRCm38
MGSCv371178,184,658 - 78,184,900UniSTSGRCm37
Celera1188,003,238 - 88,003,480UniSTS
Cytogenetic Map11B5UniSTS
X81593  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381178,358,534 - 78,358,663UniSTSGRCm38
MGSCv371178,172,036 - 78,172,165UniSTSGRCm37
Celera1187,990,616 - 87,990,745UniSTS
Cytogenetic Map11B5UniSTS
Whitehead/MRC_RH11999.1UniSTS
Foxn1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177172953111173092Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177546357111546496Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177546357111546496Mouse
4141365Ltxs3_mlethal factor toxin susceptibility 3 (mouse)Not determined117768304780855532Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117768304799486994Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177880152111880273Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:394
Count of miRNA genes:317
Interacting mature miRNAs:343
Transcripts:ENSMUST00000108294
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI429806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX521706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ056441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  W97983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y17107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000108294   ⟹   ENSMUSP00000103929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1178,248,403 - 78,277,384 (-)Ensembl
GRCm38.p6 Ensembl1178,357,577 - 78,386,558 (-)Ensembl
RefSeq Acc Id: NM_001277290   ⟹   NP_001264219
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,434 (-)NCBI
GRCm381178,357,577 - 78,386,608 (-)NCBI
Celera1187,989,659 - 88,018,690 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008238   ⟹   NP_032264
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,434 (-)NCBI
GRCm381178,357,577 - 78,386,608 (-)NCBI
MGSCv371178,171,790 - 78,200,060 (-)RGD
Celera1187,989,659 - 88,018,690 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532264   ⟹   XP_006532327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,213 (-)NCBI
GRCm381178,357,577 - 78,386,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532265   ⟹   XP_006532328
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,270,151 (-)NCBI
GRCm381178,357,577 - 78,379,325 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532266   ⟹   XP_006532329
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,597 (-)NCBI
GRCm381178,357,577 - 78,386,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532267   ⟹   XP_006532330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,242 (-)NCBI
GRCm381178,357,577 - 78,386,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532268   ⟹   XP_006532331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,212 (-)NCBI
GRCm381178,357,577 - 78,386,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314283   ⟹   XP_017169772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,213 (-)NCBI
GRCm381178,357,577 - 78,386,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314284   ⟹   XP_017169773
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,214 (-)NCBI
GRCm381178,357,577 - 78,386,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314285   ⟹   XP_017169774
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,242 (-)NCBI
GRCm381178,357,577 - 78,386,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314286   ⟹   XP_017169775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,269,885 (-)NCBI
GRCm381178,357,577 - 78,379,059 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314287   ⟹   XP_017169776
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,263,612 (-)NCBI
GRCm381178,357,577 - 78,372,786 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314288   ⟹   XP_017169777
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,250 (-)NCBI
GRCm381178,357,577 - 78,386,424 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314289   ⟹   XP_017169778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,596 (-)NCBI
GRCm381178,357,577 - 78,386,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314290   ⟹   XP_017169779
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,277,242 (-)NCBI
GRCm381178,357,577 - 78,386,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314291   ⟹   XP_017169780
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,269,840 (-)NCBI
GRCm381178,357,577 - 78,379,015 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314292   ⟹   XP_017169781
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391178,248,403 - 78,269,843 (-)NCBI
GRCm381178,357,577 - 78,379,018 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032264   ⟸   NM_008238
- Peptide Label: isoform 1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264219   ⟸   NM_001277290
- Peptide Label: isoform 2
- UniProtKB: Q32MU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532329   ⟸   XM_006532266
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532331   ⟸   XM_006532268
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006532327   ⟸   XM_006532264
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532330   ⟸   XM_006532267
- Peptide Label: isoform X2
- UniProtKB: Q32MU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532328   ⟸   XM_006532265
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017169778   ⟸   XM_017314289
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169777   ⟸   XM_017314288
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169779   ⟸   XM_017314290
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169774   ⟸   XM_017314285
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169773   ⟸   XM_017314284
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017169772   ⟸   XM_017314283
- Peptide Label: isoform X2
- UniProtKB: Q32MU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169775   ⟸   XM_017314286
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169781   ⟸   XM_017314292
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169780   ⟸   XM_017314291
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169776   ⟸   XM_017314287
- Peptide Label: isoform X1
- UniProtKB: Q61575 (UniProtKB/Swiss-Prot),   Q5SYK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000103929   ⟸   ENSMUST00000108294
Protein Domains
Fork-head

Promoters
RGD ID:8675716
Promoter ID:EPDNEW_M15889
Type:multiple initiation site
Name:Foxn1_2
Description:Mus musculus forkhead box N1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15890  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,386,407 - 78,386,467EPDNEW
RGD ID:8675718
Promoter ID:EPDNEW_M15890
Type:multiple initiation site
Name:Foxn1_1
Description:Mus musculus forkhead box N1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15889  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381178,386,588 - 78,386,648EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102949 AgrOrtholog
Ensembl Genes ENSMUSG00000002057 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000103929 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000108294 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102949 ENTREZGENE
NCBI Gene 15218 ENTREZGENE
Pfam Forkhead UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Foxn1 PhenoGen
PRINTS FORKHEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FORK_HEAD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt FOXN1_MOUSE UniProtKB/Swiss-Prot
  Q32MU3 ENTREZGENE, UniProtKB/TrEMBL
  Q5SYK1 ENTREZGENE, UniProtKB/TrEMBL
  Q61575 ENTREZGENE