Gli3 (GLI-Kruppel family member GLI3) - Rat Genome Database

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Gene: Gli3 (GLI-Kruppel family member GLI3) Mus musculus
Symbol: Gli3
Name: GLI-Kruppel family member GLI3
RGD ID: 1314554
Description: Enables DNA-binding transcription factor activity; chromatin binding activity; and sequence-specific DNA binding activity. Involved in several processes, including negative thymic T cell selection; regulation of alpha-beta T cell differentiation; and thymocyte apoptotic process. Acts upstream of or within several processes, including animal organ development; nervous system development; and regulation of transcription, DNA-templated. Located in axoneme and nuclear speck. Part of transcription repressor complex. Is expressed in several structures, including brain; embryo mesenchyme; genitourinary system; limb; and sensory organ. Used to study Greig cephalopolysyndactyly syndrome and Pallister-Hall syndrome. Human ortholog(s) of this gene implicated in Greig cephalopolysyndactyly syndrome; Pallister-Hall syndrome; anodontia; polydactyly; and syndactyly. Orthologous to human GLI3 (GLI family zinc finger 3); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: add; AI854843; anterior digit pattern deformity; AU023367; Bp; Bph; brachyphalangy; extra toes; GLI3 form of 190 kDa; GLI3 full length protein; GLI3-190; GLI3FL; Pdn; polydactyly Nagoya; transcriptional activator GLI3; Xt; zinc finger protein GLI3
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391315,638,308 - 15,904,611 (+)NCBIGRCm39mm39
GRCm39 Ensembl1315,637,820 - 15,904,611 (+)Ensembl
GRCm381315,463,723 - 15,730,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1315,463,235 - 15,730,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371315,555,556 - 15,821,859 (+)NCBIGRCm37mm9NCBIm37
MGSCv361315,254,867 - 15,517,860 (+)NCBImm8
Celera1315,745,941 - 16,017,370 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure development  (IGI)
anatomical structure formation involved in morphogenesis  (IGI)
anterior semicircular canal development  (IMP)
anterior/posterior pattern specification  (IGI,IMP)
artery development  (IGI)
axon guidance  (IMP)
brain development  (IMP)
branching involved in ureteric bud morphogenesis  (IGI)
branching morphogenesis of an epithelial tube  (IMP)
camera-type eye development  (IGI)
camera-type eye morphogenesis  (IMP)
cell differentiation involved in kidney development  (IGI)
central nervous system development  (IGI,IMP)
cerebral cortex radial glia-guided migration  (IMP)
developmental growth  (IMP)
dorsal/ventral pattern formation  (IMP)
embryonic digestive tract development  (IMP)
embryonic digestive tract morphogenesis  (IMP)
embryonic digit morphogenesis  (IGI,IMP)
embryonic limb morphogenesis  (IGI,IMP)
embryonic morphogenesis  (IMP)
embryonic neurocranium morphogenesis  (IMP)
embryonic organ development  (IEA)
embryonic skeletal system morphogenesis  (IGI)
forebrain development  (IMP)
forebrain dorsal/ventral pattern formation  (IMP)
forebrain radial glial cell differentiation  (IMP)
frontal suture morphogenesis  (IMP)
heart development  (IGI)
hindgut morphogenesis  (IGI)
hippocampus development  (IMP)
in utero embryonic development  (IMP)
inner ear development  (IGI)
kidney development  (IGI)
lambdoid suture morphogenesis  (IMP)
larynx morphogenesis  (IMP)
lateral ganglionic eminence cell proliferation  (IMP)
lateral semicircular canal development  (IMP)
layer formation in cerebral cortex  (IMP)
limb development  (IMP)
limb morphogenesis  (IMP,ISO)
liver regeneration  (ISO)
lung development  (IGI,IMP)
mammary gland development  (IMP)
mammary gland specification  (IGI)
melanocyte differentiation  (IMP)
metanephros development  (IGI)
negative regulation of alpha-beta T cell differentiation  (IMP)
negative regulation of apoptotic process  (IMP)
negative regulation of canonical Wnt signaling pathway  (ISO)
negative regulation of cell differentiation  (IGI)
negative regulation of cell population proliferation  (IGI,IMP)
negative regulation of neuron differentiation  (IMP)
negative regulation of smoothened signaling pathway  (IMP)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO)
negative thymic T cell selection  (IMP)
neural tube development  (IMP)
neuron fate commitment  (IMP)
odontogenesis of dentin-containing tooth  (IGI)
oligodendrocyte differentiation  (IGI)
optic nerve morphogenesis  (IMP)
pallium development  (IMP)
pattern specification process  (IGI)
positive regulation of alpha-beta T cell differentiation  (IMP)
positive regulation of chondrocyte differentiation  (IMP)
positive regulation of neuroblast proliferation  (IMP)
positive regulation of osteoblast differentiation  (IGI,IMP)
positive regulation of protein import into nucleus  (IGI)
positive regulation of transcription by RNA polymerase II  (IMP,ISO)
positive regulation of transcription, DNA-templated  (IDA,IMP)
prostate gland development  (ISO)
protein processing  (IDA)
proximal/distal pattern formation  (IGI,IMP)
regulation of apoptotic process  (IMP)
regulation of bone development  (IMP)
regulation of cell differentiation  (IGI)
regulation of cell population proliferation  (IGI)
regulation of gene expression  (IGI)
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  (IGI)
regulation of transcription by RNA polymerase II  (IBA)
regulation of transcription, DNA-templated  (IMP)
response to estrogen  (ISO)
roof of mouth development  (IMP)
sagittal suture morphogenesis  (IMP)
smoothened signaling pathway  (IBA,IGI,ISO)
smoothened signaling pathway involved in dorsal/ventral neural tube patterning  (IGI)
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification  (IGI)
smoothened signaling pathway involved in ventral spinal cord interneuron specification  (IGI)
spinal cord dorsal/ventral patterning  (IGI)
spinal cord motor neuron differentiation  (IGI)
subpallium development  (IMP)
T cell differentiation in thymus  (IMP)
telencephalon development  (IMP)
thymocyte apoptotic process  (IMP)
tongue development  (IMP)
tube development  (IGI)
vocalization behavior  (IMP)
wound healing  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal anterior cardinal vein morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal axial skeleton morphology  (IAGP)
abnormal basisphenoid bone morphology  (IAGP)
abnormal bone marrow cavity morphology  (IAGP)
abnormal bone mineralization  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cephalic neural fold morphology  (IAGP)
abnormal cerebellar foliation  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cerebral aqueduct morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal cerebral hemisphere morphology  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal colon morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal digit development  (IAGP)
abnormal digit morphology  (IAGP)
abnormal ear development  (IAGP)
abnormal ear position  (IAGP)
abnormal embryonic autopod plate morphology  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal endochondral bone ossification  (IAGP)
abnormal endoderm development  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal esophagus development  (IAGP)
abnormal eye development  (IAGP)
abnormal eye morphology  (IAGP)
abnormal facial morphology  (IAGP)
abnormal floor plate morphology  (IAGP)
abnormal folding of telencephalic vesicles  (IAGP)
abnormal forebrain development  (IAGP)
abnormal forebrain morphology  (IAGP)
abnormal foregut morphology  (IAGP)
abnormal forehead morphology  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal forelimb stylopod morphology  (IAGP)
abnormal forelimb zeugopod morphology  (IAGP)
abnormal hallux morphology  (IAGP)
abnormal hindbrain morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal hippocampal fornix morphology  (IAGP)
abnormal hippocampus development  (IAGP)
abnormal hippocampus pyramidal cell layer  (IAGP)
abnormal hypothalamus morphology  (IAGP)
abnormal inferior colliculus morphology  (IAGP)
abnormal innervation  (IAGP)
abnormal interfrontal bone morphology  (IAGP)
abnormal intestine morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal lambdoid suture morphology  (IAGP)
abnormal laryngeal cartilage morphology  (IAGP)
abnormal lateral ventricle morphology  (IAGP)
abnormal left lung morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal limb bud morphology  (IAGP)
abnormal limb development  (IAGP)
abnormal limb morphology  (IAGP)
abnormal long bone diaphysis morphology  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal lung bud morphology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung morphology  (IAGP)
abnormal mammary gland bud morphology  (IAGP)
abnormal mammary gland embryonic development  (IAGP)
abnormal mammary line morphology  (IAGP)
abnormal mammary placode morphology  (IAGP)
abnormal maxilla morphology  (IAGP)
abnormal medulla oblongata morphology  (IAGP)
abnormal melanoblast morphology  (IAGP)
abnormal metacarpal bone morphology  (IAGP)
abnormal metatarsal bone morphology  (IAGP)
abnormal midbrain morphology  (IAGP)
abnormal midbrain-hindbrain boundary morphology  (IAGP)
abnormal motor neuron morphology  (IAGP)
abnormal nail morphology  (IAGP)
abnormal nasal cavity morphology  (IAGP)
abnormal nasal placode morphology  (IAGP)
abnormal nasal septum morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal neurocranium morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal neuronal migration  (IAGP)
abnormal neuronal precursor cell number  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal nose morphology  (IAGP)
abnormal olfactory epithelium morphology  (IAGP)
abnormal olfactory nerve morphology  (IAGP)
abnormal olfactory tract morphology  (IAGP)
abnormal optic chiasm morphology  (IAGP)
abnormal optic cup morphology  (IAGP)
abnormal optic stalk morphology  (IAGP)
abnormal optic vesicle formation  (IAGP)
abnormal orbitosphenoid bone morphology  (IAGP)
abnormal otic capsule morphology  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal palatine bone horizontal plate morphology  (IAGP)
abnormal pericardium morphology  (IAGP)
abnormal perichondrium morphology  (IAGP)
abnormal phalanx morphology  (IAGP)
abnormal pharyngeal arch morphology  (IAGP)
abnormal pubis morphology  (IAGP)
abnormal radial glial cell morphology  (IAGP)
abnormal retina morphology  (IAGP)
abnormal rhombomere morphology  (IAGP)
abnormal right lung accessory lobe morphology  (IAGP)
abnormal right lung caudal lobe morphology  (IAGP)
abnormal right lung middle lobe morphology  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal skeleton development  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal spinal cord interneuron morphology  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal spine curvature  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal stratification in cerebral cortex  (IAGP)
abnormal superior colliculus morphology  (IAGP)
abnormal superior semicircular canal morphology  (IAGP)
abnormal tectum morphology  (IAGP)
abnormal telencephalon development  (IAGP)
abnormal thalamus morphology  (IAGP)
abnormal tooth development  (IAGP)
abnormal trachea development  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal vertebrae development  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral arch morphology  (IAGP)
abnormal vibrissa morphology  (IAGP)
abnormal vibrissa number  (IAGP)
abnormal xiphoid process morphology  (IAGP)
absent adrenal gland  (IAGP)
absent anterior commissure  (IAGP)
absent corpus callosum  (IAGP)
absent epiglottis  (IAGP)
absent esophagus  (IAGP)
absent fibula  (IAGP)
absent floor plate  (IAGP)
absent hippocampal commissure  (IAGP)
absent inferior colliculus  (IAGP)
absent lateral semicircular canal  (IAGP)
absent lungs  (IAGP)
absent neurocranium  (IAGP)
absent olfactory bulb  (IAGP)
absent optic nerve  (IAGP)
absent pineal gland  (IAGP)
absent radius  (IAGP)
absent tibia  (IAGP)
absent trachea  (IAGP)
absent ulna  (IAGP)
acoria  (IAGP)
adactyly  (IAGP)
anal atresia  (IAGP)
anophthalmia  (IAGP)
basisphenoid bone foramen  (IAGP)
belly spot  (IAGP)
belted  (IAGP)
bleb  (IAGP)
bowed fibula  (IAGP)
bowed radius  (IAGP)
bowed tibia  (IAGP)
bowed ulna  (IAGP)
brachydactyly  (IAGP)
brachyphalangia  (IAGP)
camptomelia  (IAGP)
cleft palate  (IAGP)
cleft upper lip  (IAGP)
decreased body size  (IAGP)
decreased embryonic neuroepithelial cell proliferation  (IAGP)
decreased length of long bones  (IAGP)
decreased lung weight  (IAGP)
decreased motor neuron number  (IAGP)
decreased nipple number  (IAGP)
delayed endochondral bone ossification  (IAGP)
delayed neural tube closure  (IAGP)
ectopic adrenal gland  (IAGP)
ectopic ovary  (IAGP)
edema  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality  (IAGP)
embryonic lethality before implantation, complete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
encephalomeningocele  (IAGP)
enlarged cranium  (IAGP)
enlarged first pharyngeal arch  (IAGP)
enlarged tectum  (IAGP)
esophageal atresia  (IAGP)
exencephaly  (IAGP)
eyelids fail to open  (IAGP)
eyelids open at birth  (IAGP)
failure of endochondral bone ossification  (IAGP)
fused carpal bones  (IAGP)
fused tarsal bones  (IAGP)
fusion of vertebral arches  (IAGP)
Harderian gland hyperplasia  (IAGP)
hemimelia  (IAGP)
hemorrhage  (IAGP)
herniated abdominal wall  (IAGP)
hydrocephaly  (IAGP)
hypopigmentation  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased diameter of humerus  (IAGP)
increased diameter of radius  (IAGP)
increased diameter of ulna  (IAGP)
increased embryo size  (IAGP)
increased forebrain size  (IAGP)
increased neuronal precursor cell number  (IAGP)
increased total retina thickness  (IAGP)
interdigital webbing  (IAGP)
lethality throughout fetal growth and development, complete penetrance  (IAGP)
male infertility  (IAGP)
mandible hypoplasia  (IAGP)
microphthalmia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
oligodactyly  (IAGP)
omphalocele  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
polydactyly  (IAGP)
polyphalangy  (IAGP)
polysyndactyly  (IAGP)
postaxial polydactyly  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
preaxial polydactyly  (IAGP)
premature death  (IAGP)
premature lambdoid suture closure  (IAGP)
prenatal lethality  (IEA)
prenatal lethality, incomplete penetrance  (IAGP)
progressive hair loss  (IAGP)
pulmonary hypoplasia  (IAGP)
reduced cerebellar foliation  (IAGP)
respiratory distress  (IAGP)
sacral vertebral fusion  (IAGP)
scapular bone foramen  (IAGP)
short femur  (IAGP)
short fibula  (IAGP)
short humerus  (IAGP)
short limbs  (IAGP)
short nasal septum  (IAGP)
short radius  (IAGP)
short scapula  (IAGP)
short sternum  (IAGP)
short tibia  (IAGP)
short ulna  (IAGP)
single kidney  (IAGP)
skin edema  (IAGP)
small acromion  (IAGP)
small basisphenoid bone  (IAGP)
small cerebellum  (IAGP)
small lung  (IAGP)
small scapula  (IAGP)
split sternal manubrium  (IAGP)
split sternum  (IAGP)
spongiform encephalopathy  (IAGP)
sternebra fusion  (IAGP)
syndactyly  (IAGP)
synostosis  (IAGP)
thick apical ectodermal ridge  (IAGP)
thick nasal septum  (IAGP)
thin cerebral cortex  (IAGP)
thin external granule cell layer  (IAGP)
trachea stenosis  (IAGP)
tracheoesophageal fistula  (IAGP)
vertebral fusion  (IAGP)
wavy neural tube  (IAGP)
wide metopic suture  (IAGP)
wide sagittal suture  (IAGP)

References - curated
1. Böse J, etal., Hum Mol Genet. 2002 May 1;11(9):1129-35.
2. Cao D, etal., BMC Musculoskelet Disord. 2009 Nov 19;10:142. doi: 10.1186/1471-2474-10-142.
3. Cheng B, etal., J Clin Lab Anal. 2006;20(4):133-8.
4. Cohen MM, Am J Med Genet A. 2010 Aug;152A(8):1875-914. doi: 10.1002/ajmg.a.32909.
5. Démurger F, etal., Eur J Hum Genet. 2015 Jan;23(1):92-102. doi: 10.1038/ejhg.2014.62. Epub 2014 Apr 16.
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14. Liu H, etal., Eur J Oral Sci. 2012 Oct;120(5):378-85. doi: 10.1111/j.1600-0722.2012.00986.x. Epub 2012 Aug 18.
15. Matera I, etal., Hum Mol Genet. 2008 Jul 15;17(14):2118-31. doi: 10.1093/hmg/ddn110. Epub 2008 Apr 7.
16. MGD data from the GO Consortium
18. Mimeault M and Batra SK, Pharmacol Rev. 2010 Sep;62(3):497-524.
19. OMIM Disease Annotation Pipeline
20. Pipeline to import KEGG annotations from KEGG into RGD
21. Radhakrishna U, etal., Nat Genet. 1997 Nov;17(3):269-71.
22. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23. RGD automated import pipeline for gene-chemical interactions
24. Thien H and Rüther U, Mamm Genome. 1999 Mar;10(3):205-9.
25. Volodarsky M, etal., BMC Med Genet. 2014 Sep 30;15:110. doi: 10.1186/s12881-014-0110-9.
26. Walterhouse D, etal., Dev Dyn 1993 Feb;196(2):91-102.
27. Wang C, etal., Dev Dyn. 2007 Mar;236(3):769-76.
28. Wang Z, etal., Clin Chim Acta. 2014 Jun 10;433:195-9. doi: 10.1016/j.cca.2014.03.012. Epub 2014 Mar 22.
29. Zhu YP, etal., Reprod Toxicol. 2016 Jun;61:169-76. doi: 10.1016/j.reprotox.2016.04.007. Epub 2016 Apr 11.
Additional References at PubMed
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PMID:8688459   PMID:8854868   PMID:8889548   PMID:8949922   PMID:8952226   PMID:9006072   PMID:9027500   PMID:9027508   PMID:9073443   PMID:9118802   PMID:9152005   PMID:9152009  
PMID:9178901   PMID:9216996   PMID:9232602   PMID:9232833   PMID:9247260   PMID:9256352   PMID:9268572   PMID:9268579   PMID:9374397   PMID:9438426   PMID:9584130   PMID:9636069  
PMID:9655799   PMID:9655803   PMID:9680393   PMID:9716414   PMID:9731531   PMID:9731532   PMID:9768363   PMID:9778501   PMID:9834182   PMID:9915577   PMID:9918099   PMID:9988217  
PMID:10075717   PMID:10096602   PMID:10098408   PMID:10208739   PMID:10330024   PMID:10349636   PMID:10385121   PMID:10409502   PMID:10498273   PMID:10498679   PMID:10512189   PMID:10529434  
PMID:10531011   PMID:10534616   PMID:10559489   PMID:10607900   PMID:10625551   PMID:10631181   PMID:10693670   PMID:10693759   PMID:10725236   PMID:10725249   PMID:10908621   PMID:10920228  
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PMID:12070081   PMID:12086465   PMID:12094077   PMID:12112872   PMID:12117807   PMID:12142027   PMID:12175489   PMID:12198547   PMID:12215652   PMID:12221011   PMID:12351188   PMID:12376101  
PMID:12385751   PMID:12397105   PMID:12399319   PMID:12403705   PMID:12435361   PMID:12435627   PMID:12435628   PMID:12435629   PMID:12441290   PMID:12455637   PMID:12466851   PMID:12477932  
PMID:12533516   PMID:12634451   PMID:12701101   PMID:12736212   PMID:12812795   PMID:12898607   PMID:12919674   PMID:12921747   PMID:14566948   PMID:14568100   PMID:14597661   PMID:14602680  
PMID:14603322   PMID:14610273   PMID:14645126   PMID:14681189   PMID:14681479   PMID:14723846   PMID:14723851   PMID:14727139   PMID:14745966   PMID:14973295   PMID:15005800   PMID:15008897  
PMID:15030763   PMID:15042696   PMID:15065125   PMID:15102708   PMID:15105374   PMID:15136151   PMID:15147765   PMID:15192229   PMID:15215207   PMID:15315762   PMID:15315763   PMID:15496441  
PMID:15604102   PMID:15614767   PMID:15618518   PMID:15668330   PMID:15677727   PMID:15728667   PMID:15736266   PMID:15811134   PMID:15834844   PMID:15841179   PMID:15855276   PMID:15858818  
PMID:15880651   PMID:15930098   PMID:15968591   PMID:15973411   PMID:16015334   PMID:16039644   PMID:16054035   PMID:16061793   PMID:16141072   PMID:16141073   PMID:16141219   PMID:16168404  
PMID:16168717   PMID:16169709   PMID:16190908   PMID:16229832   PMID:16247775   PMID:16254602   PMID:16284117   PMID:16284245   PMID:16311594   PMID:16336945   PMID:16342201   PMID:16364285  
PMID:16368932   PMID:16371461   PMID:16396903   PMID:16439477   PMID:16459298   PMID:16556916   PMID:16571352   PMID:16571630   PMID:16602821   PMID:16611729   PMID:16611981   PMID:16672333  
PMID:16707121   PMID:16720875   PMID:16766714   PMID:16791844   PMID:16818445   PMID:16818446   PMID:16914490   PMID:16916379   PMID:16922921   PMID:16950124   PMID:16957084   PMID:16958114  
PMID:16968815   PMID:16989801   PMID:17026983   PMID:17029624   PMID:17043310   PMID:17187775   PMID:17191253   PMID:17199044   PMID:17202190   PMID:17222543   PMID:17257418   PMID:17304534  
PMID:17328886   PMID:17331723   PMID:17334602   PMID:17360777   PMID:17395647   PMID:17400206   PMID:17467687   PMID:17468181   PMID:17488627   PMID:17504940   PMID:17507410   PMID:17537963  
PMID:17553904   PMID:17588959   PMID:17600494   PMID:17660199   PMID:17698054   PMID:17707622   PMID:17714700   PMID:17725385   PMID:17928452   PMID:17928865   PMID:17959802   PMID:18057099  
PMID:18083924   PMID:18270576   PMID:18272352   PMID:18287559   PMID:18327258   PMID:18329011   PMID:18351672   PMID:18417110   PMID:18429041   PMID:18448089   PMID:18452488   PMID:18477452  
PMID:18480159   PMID:18539921   PMID:18547559   PMID:18582859   PMID:18625063   PMID:18632939   PMID:18710724   PMID:18725516   PMID:18728187   PMID:18799682   PMID:18799693   PMID:18927156  
PMID:19004860   PMID:19036983   PMID:19048639   PMID:19049965   PMID:19103193   PMID:19116665   PMID:19121302   PMID:19168674   PMID:19168680   PMID:19211672   PMID:19211681   PMID:19223390  
PMID:19248778   PMID:19286674   PMID:19287388   PMID:19298856   PMID:19325248   PMID:19334287   PMID:19386269   PMID:19389374   PMID:19422820   PMID:19433083   PMID:19445942   PMID:19474320  
PMID:19505455   PMID:19536807   PMID:19549984   PMID:19570847   PMID:19574535   PMID:19589963   PMID:19592253   PMID:19622347   PMID:19632216   PMID:19666503   PMID:19667090   PMID:19684112  
PMID:19686689   PMID:19701203   PMID:19701205   PMID:19729595   PMID:19783738   PMID:19783740   PMID:19809516   PMID:19815519   PMID:19877269   PMID:19877275   PMID:19887680   PMID:19906844  
PMID:19906864   PMID:20040495   PMID:20059953   PMID:20067783   PMID:20081193   PMID:20106874   PMID:20154143   PMID:20159594   PMID:20201963   PMID:20201966   PMID:20211142   PMID:20360384  
PMID:20386744   PMID:20412781   PMID:20426846   PMID:20436479   PMID:20463034   PMID:20570969   PMID:20627960   PMID:20637749   PMID:20668538   PMID:20934421   PMID:20943901   PMID:20943929  
PMID:20956384   PMID:21045211   PMID:21062862   PMID:21093585   PMID:21185280   PMID:21209331   PMID:21209912   PMID:21256124   PMID:21262763   PMID:21267068   PMID:21283718   PMID:21289087  
PMID:21289193   PMID:21292980   PMID:21297010   PMID:21303853   PMID:21337666   PMID:21339645   PMID:21364421   PMID:21383175   PMID:21452227   PMID:21465616   PMID:21490064   PMID:21525285  
PMID:21539826   PMID:21539829   PMID:21549329   PMID:21552265   PMID:21586556   PMID:21653639   PMID:21677750   PMID:21693512   PMID:21717586   PMID:21725307   PMID:21731673   PMID:21763481  
PMID:21766338   PMID:21768360   PMID:21795281   PMID:21873635   PMID:21925158   PMID:21935430   PMID:21937600   PMID:21976438   PMID:22007132   PMID:22046263   PMID:22178118   PMID:22178153  
PMID:22182519   PMID:22228095   PMID:22228100   PMID:22234993   PMID:22235033   PMID:22265416   PMID:22275192   PMID:22275805   PMID:22281533   PMID:22340494   PMID:22383895   PMID:22402963  
PMID:22465667   PMID:22479201   PMID:22493482   PMID:22522080   PMID:22535956   PMID:22547067   PMID:22549777   PMID:22563320   PMID:22595669   PMID:22689656   PMID:22698544   PMID:22841643  
PMID:22888807   PMID:22889265   PMID:22903314   PMID:22923088   PMID:22935613   PMID:22987640   PMID:22988430   PMID:23014696   PMID:23026747   PMID:23042737   PMID:23077214   PMID:23201751  
PMID:23239739   PMID:23300826   PMID:23308271   PMID:23313125   PMID:23332756   PMID:23364326   PMID:23396189   PMID:23444355   PMID:23469020   PMID:23482494   PMID:23536097   PMID:23618354  
PMID:23633510   PMID:23644062   PMID:23645682   PMID:23650387   PMID:23754280   PMID:23762375   PMID:23792766   PMID:23806618   PMID:23872235   PMID:23942202   PMID:23955340   PMID:23994639  
PMID:24009529   PMID:24014668   PMID:24044950   PMID:24073291   PMID:24076664   PMID:24146773   PMID:24174682   PMID:24218555   PMID:24218595   PMID:24238961   PMID:24260306   PMID:24302887  
PMID:24415953   PMID:24424161   PMID:24548465   PMID:24697898   PMID:24700818   PMID:24726282   PMID:24726283   PMID:24769002   PMID:24853502   PMID:24886827   PMID:24927541   PMID:24930703  
PMID:24946806   PMID:24948802   PMID:24952464   PMID:24952961   PMID:24990743   PMID:25053435   PMID:25083987   PMID:25127137   PMID:25268479   PMID:25294941   PMID:25336744   PMID:25446516  
PMID:25448692   PMID:25453830   PMID:25581370   PMID:25626636   PMID:25631876   PMID:25695606   PMID:25760946   PMID:25834022   PMID:25848030   PMID:25848055   PMID:25995356   PMID:26001200  
PMID:26010061   PMID:26023097   PMID:26057579   PMID:26062940   PMID:26071364   PMID:26150391   PMID:26220403   PMID:26238476   PMID:26261006   PMID:26387942   PMID:26439735   PMID:26452989  
PMID:26509897   PMID:26542012   PMID:26604140   PMID:26656997   PMID:26697723   PMID:26797124   PMID:26884322   PMID:26930384   PMID:26959361   PMID:26965371   PMID:27001906   PMID:27046536  
PMID:27320915   PMID:27340223   PMID:27352137   PMID:27395007   PMID:27414999   PMID:27494603   PMID:27496710   PMID:27713395   PMID:27720745   PMID:27802276   PMID:27814383   PMID:27849569  
PMID:27924807   PMID:27930311   PMID:28069795   PMID:28154153   PMID:28177282   PMID:28286175   PMID:28379358   PMID:28412462   PMID:28432216   PMID:28467430   PMID:28533268   PMID:28556366  
PMID:28560839   PMID:28673820   PMID:28688895   PMID:28778798   PMID:28781964   PMID:28794157   PMID:28799057   PMID:28800946   PMID:28817564   PMID:28891097   PMID:28939119   PMID:29038301  
PMID:29166577   PMID:29222391   PMID:29263200   PMID:29361554   PMID:29386106   PMID:29394901   PMID:29415007   PMID:29420474   PMID:29487109   PMID:29487191   PMID:29515120   PMID:29532549  
PMID:29729398   PMID:29879109   PMID:29879378   PMID:29941866   PMID:29945868   PMID:29967343   PMID:30093555   PMID:30292786   PMID:30301781   PMID:30352686   PMID:30389913   PMID:30445565  
PMID:30470704   PMID:30692221   PMID:30782847   PMID:30791390   PMID:30814516   PMID:30914320   PMID:30953627   PMID:30963569   PMID:31167144   PMID:31221640   PMID:31226309   PMID:31373354  
PMID:31390572   PMID:31550480   PMID:31604927   PMID:31767679   PMID:31896583   PMID:31964774   PMID:31989924   PMID:32001436   PMID:32098917   PMID:32114096   PMID:32151560   PMID:32156750  
PMID:32245491   PMID:32317081   PMID:32320667   PMID:32325033   PMID:32332736   PMID:32392211   PMID:32450229   PMID:32497091   PMID:32662771   PMID:32702291   PMID:32758357   PMID:32840212  
PMID:32855417   PMID:32909945   PMID:33006313   PMID:33241915   PMID:33530552  


Comparative Map Data
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm391315,638,308 - 15,904,611 (+)NCBIGRCm39mm39
GRCm39 Ensembl1315,637,820 - 15,904,611 (+)Ensembl
GRCm381315,463,723 - 15,730,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1315,463,235 - 15,730,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371315,555,556 - 15,821,859 (+)NCBIGRCm37mm9NCBIm37
MGSCv361315,254,867 - 15,517,860 (+)NCBImm8
Celera1315,745,941 - 16,017,370 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.43NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh38.p13 Ensembl741,960,949 - 42,264,100 (-)EnsemblGRCh38hg38GRCh38
GRCh38741,960,949 - 42,237,209 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37742,000,547 - 42,276,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36741,967,072 - 42,243,137 (-)NCBINCBI36hg18NCBI36
Build 34741,776,919 - 42,036,135NCBI
Celera741,991,319 - 42,267,350 (-)NCBI
Cytogenetic Map7p14.1NCBI
HuRef741,885,427 - 42,162,362 (-)NCBIHuRef
CHM1_1742,003,855 - 42,280,223 (-)NCBICHM1_1
CRA_TCAGchr7v2742,040,400 - 42,316,460 (-)NCBI
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.21749,438,567 - 49,709,712 (-)NCBI
Rnor_6.0 Ensembl1752,294,942 - 52,569,036 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01752,294,942 - 52,569,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01750,360,049 - 50,629,477 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41757,594,102 - 57,867,710 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11757,781,069 - 57,856,545 (-)NCBI
Celera1745,497,321 - 45,768,089 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_0049554601,528,412 - 1,805,918 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554601,528,457 - 1,805,584 (+)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.1742,056,566 - 42,322,865 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl742,056,565 - 42,322,865 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0742,004,965 - 42,280,772 (+)NCBIMhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1187,800,817 - 8,071,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl187,801,394 - 8,068,132 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha187,651,291 - 7,921,706 (+)NCBI
ROS_Cfam_1.0187,847,548 - 8,118,213 (+)NCBI
UMICH_Zoey_3.1187,829,563 - 8,099,968 (+)NCBI
UNSW_CanFamBas_1.0187,798,494 - 8,068,961 (+)NCBI
UU_Cfam_GSD_1.0187,912,805 - 8,183,294 (+)NCBI
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_02440511897,915,181 - 98,191,969 (-)NCBI
SpeTri2.0NW_00493647817,129,922 - 17,403,630 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1852,404,071 - 52,697,903 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11852,403,463 - 52,697,906 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21857,616,734 - 57,801,327 (+)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.12116,386,700 - 16,665,648 (+)NCBI
ChlSab1.1 Ensembl2116,549,789 - 16,662,238 (+)Ensembl
Vero_WHO_p1.0NW_0236660625,800,697 - 6,080,257 (-)NCBI
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla 1.0NW_00462474018,961,395 - 19,238,760 (+)NCBI

Position Markers
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,688,554 - 15,688,765UniSTSGRCm38
MGSCv371315,780,387 - 15,780,598UniSTSGRCm37
Celera1315,975,898 - 15,976,109UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,729,634 - 15,729,737UniSTSGRCm38
MGSCv371315,821,467 - 15,821,570UniSTSGRCm37
Celera1316,016,978 - 16,017,081UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,591,327 - 15,591,498UniSTSGRCm38
MGSCv371315,683,160 - 15,683,331UniSTSGRCm37
Celera1315,876,992 - 15,877,163UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Whitehead_YAC13 UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,650,954 - 15,651,118UniSTSGRCm38
MGSCv371315,742,787 - 15,742,951UniSTSGRCm37
Celera1315,937,944 - 15,938,108UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Whitehead_YAC13 UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,726,874 - 15,726,967UniSTSGRCm38
MGSCv371315,818,707 - 15,818,800UniSTSGRCm37
Celera1316,014,218 - 16,014,311UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Whitehead_YAC13 UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,707,091 - 15,707,215UniSTSGRCm38
MGSCv371315,798,924 - 15,799,048UniSTSGRCm37
Celera1315,994,435 - 15,994,559UniSTS
Cytogenetic Map13A2UniSTS
cM Map134.0UniSTS
Whitehead Genetic131.1UniSTS
Whitehead_YAC13 UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,727,946 - 15,728,207UniSTSGRCm38
MGSCv371315,819,779 - 15,820,040UniSTSGRCm37
Celera1316,015,290 - 16,015,551UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,728,826 - 15,729,046UniSTSGRCm38
MGSCv371315,820,659 - 15,820,879UniSTSGRCm37
Celera1316,016,170 - 16,016,390UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,728,811 - 15,728,931UniSTSGRCm38
MGSCv371315,820,644 - 15,820,764UniSTSGRCm37
Celera1316,016,155 - 16,016,275UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,726,688 - 15,726,895UniSTSGRCm38
MGSCv371315,818,521 - 15,818,728UniSTSGRCm37
Celera1316,014,032 - 16,014,239UniSTS
Cytogenetic Map13A2UniSTS
cM Map138.0UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381315,596,907 - 15,597,005UniSTSGRCm38
MGSCv371315,688,740 - 15,688,838UniSTSGRCm37
Celera1315,882,572 - 15,882,670UniSTS
Cytogenetic Map13A2UniSTS
cM Map1314.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389101,435,534 - 101,435,719UniSTSGRCm38
GRCm381315,726,741 - 15,726,892UniSTSGRCm38
MGSCv379101,337,864 - 101,338,049UniSTSGRCm37
MGSCv371315,818,574 - 15,818,725UniSTSGRCm37
Celera1316,014,085 - 16,014,236UniSTS
Celera9100,962,828 - 100,963,014UniSTS
Cytogenetic Map13A2UniSTS
cM Map138.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A2UniSTS
cM Map138.0UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A2UniSTS
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A2UniSTS

QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123404636Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123404636Mouse
1301890Adip7_madiposity 7 (mouse)Not determined13123404636Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined13133994099Mouse
10449140Eosn2_meosinophil differential 2 (mouse)134672634046726Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)134672634046726Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13329344237293650Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13329344237293650Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13329344237293650Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13343134237431502Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13349603037496173Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13390000075900000Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13436402652947604Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1277
Count of miRNA genes:678
Interacting mature miRNAs:850
Transcripts:ENSMUST00000110510, ENSMUST00000130065, ENSMUST00000130535, ENSMUST00000141194
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.



Nucleotide Sequences
RefSeq Transcripts NM_008130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC163610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC173115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC173210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF418601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA752350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X95255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000110510   ⟹   ENSMUSP00000106137
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1315,463,980 - 15,730,026 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130065   ⟹   ENSMUSP00000115989
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1315,463,235 - 15,715,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130535
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1315,463,723 - 15,663,518 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141194   ⟹   ENSMUSP00000152092
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1315,463,251 - 15,641,270 (+)Ensembl
RefSeq Acc Id: NM_008130   ⟹   NP_032156
RefSeq Status: VALIDATED
Mouse AssemblyChrPosition (strand)Source
GRCm391315,638,308 - 15,904,611 (+)NCBI
GRCm381315,463,723 - 15,730,026 (+)NCBI
MGSCv371315,555,556 - 15,821,859 (+)RGD
Celera1315,745,941 - 16,017,370 (+)RGD
RefSeq Acc Id: XM_017315389   ⟹   XP_017170878
RefSeq Status:
Mouse AssemblyChrPosition (strand)Source
GRCm391315,896,021 - 15,904,598 (+)NCBI
GRCm381315,721,436 - 15,730,013 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_032156   ⟸   NM_008130
- UniProtKB: Q61602 (UniProtKB/Swiss-Prot),   B2RUG4 (UniProtKB/TrEMBL),   Q3TYX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170878   ⟸   XM_017315389
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000115989   ⟸   ENSMUST00000130065
RefSeq Acc Id: ENSMUSP00000106137   ⟸   ENSMUST00000110510
RefSeq Acc Id: ENSMUSP00000152092   ⟸   ENSMUST00000141194
Protein Domains

RGD ID:8679630
Promoter ID:EPDNEW_M17846
Type:initiation region
Description:Mus musculus GLI-Kruppel family member GLI3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Alternative Promoters:null; see alsoEPDNEW_M17847  
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm381315,463,254 - 15,463,314EPDNEW
RGD ID:8679632
Promoter ID:EPDNEW_M17847
Type:initiation region
Description:Mus musculus GLI-Kruppel family member GLI3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Alternative Promoters:null; see alsoEPDNEW_M17846  
Experiment Methods:Single-end sequencing.
Mouse AssemblyChrPosition (strand)Source
GRCm381315,463,691 - 15,463,751EPDNEW
RGD ID:6823926
Promoter ID:MM_KWN:13288
SO ACC ID:SO:0000170
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4
Transcripts:ENSMUST00000110510,   OTTMUST00000059817,   OTTMUST00000059819,   UC007PNQ.1
Mouse AssemblyChrPosition (strand)Source
MGSCv361315,555,194 - 15,555,694 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95729 AgrOrtholog
Ensembl Genes ENSMUSG00000021318 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000106137 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115989 UniProtKB/TrEMBL
  ENSMUSP00000152092 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000110510 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130065 UniProtKB/TrEMBL
  ENSMUST00000141194 UniProtKB/TrEMBL
InterPro GLI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLI3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14634 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PANTHER PTHR45718 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45718:SF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gli3 PhenoGen
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLI3_MOUSE UniProtKB/Swiss-Prot