Gata3 (GATA binding protein 3) - Rat Genome Database

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Gene: Gata3 (GATA binding protein 3) Mus musculus
Analyze
Symbol: Gata3
Name: GATA binding protein 3
RGD ID: 733639
MGI Page MGI
Description: Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; interleukin-2 receptor binding activity; and transcription coactivator binding activity. Involved in several processes, including heart development; intracellular signal transduction; and kidney development. Acts upstream of or within several processes, including hematopoietic or lymphoid organ development; regulation of gene expression; and regulation of histone modification. Located in nucleus. Is expressed in several structures, including branchial arch; early conceptus; genitourinary system; nervous system; and sensory organ. Used to study hypoparathyroidism-deafness-renal disease syndrome. Human ortholog(s) of this gene implicated in hypoparathyroidism; hypoparathyroidism-deafness-renal disease syndrome; nephrosis; and sensorineural hearing loss. Orthologous to human GATA3 (GATA binding protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gata; Gata-3; GATA-binding factor 3; GATA-binding protein 3; j; jal; trans-acting T-cell-specific transcription factor GATA-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3929,861,889 - 9,892,762 (-)NCBIGRCm39mm39
GRCm39 Ensembl29,861,889 - 9,894,845 (-)Ensembl
GRCm3829,857,078 - 9,887,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl29,857,078 - 9,890,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv3729,778,705 - 9,800,227 (-)NCBIGRCm37mm9NCBIm37
MGSCv3629,774,931 - 9,795,629 (-)NCBImm8
Celera29,794,542 - 9,816,062 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map26.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,4-benzoquinone  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
13,14-dihydro-15-ketoprostaglandin D2  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-tert-butylhydroquinone  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxynon-2-enal  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-galactosylceramide  (EXP)
ammonium chloride  (ISO)
aristolochic acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzalkonium chloride  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
buta-1,3-diene  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloroprene  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumestrol  (ISO)
cyclophosphamide  (EXP)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl 3,4-dihydroxybenzoate  (EXP)
flutamide  (EXP)
folic acid  (EXP)
fragrance  (ISO)
gamma-hexachlorocyclohexane  (ISO)
gemfibrozil  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
ibuprofen  (EXP)
ionomycin  (EXP)
irinotecan  (ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
levamisole  (EXP)
Licochalcone B  (ISO)
Mecamylamine  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP,ISO)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N'-Nitrosonornicotine  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
potassium chloride  (ISO)
resveratrol  (EXP)
rofecoxib  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
SR 144528  (EXP)
tacrine  (ISO)
tamoxifen  (EXP,ISO)
testosterone  (ISO)
thalidomide  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
toluene  (EXP)
topotecan  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure formation involved in morphogenesis  (IMP)
aortic valve morphogenesis  (IMP)
axon guidance  (IMP)
canonical Wnt signaling pathway involved in metanephric kidney development  (IMP)
cardiac right ventricle morphogenesis  (IMP)
cell fate commitment  (IBA)
cell fate determination  (IDA)
cell maturation  (IMP)
cell morphogenesis  (IMP)
cell population proliferation  (IMP)
cellular response to BMP stimulus  (IDA)
cellular response to cytokine stimulus  (IDA)
cellular response to interferon-alpha  (ISO)
cellular response to interleukin-4  (IDA,IEP,ISO)
cellular response to tumor necrosis factor  (ISO)
chromatin remodeling  (IDA,IMP)
cochlea development  (ISO)
developmental growth  (IMP)
ear development  (ISO)
embryonic hemopoiesis  (IGI,IMP)
embryonic organ development  (IBA,IMP)
erythrocyte differentiation  (IDA)
gene expression  (IMP)
homeostasis of number of cells  (IMP)
humoral immune response  (IMP)
immune system development  (IBA)
immune system process  (IEA)
in utero embryonic development  (IMP)
innate immune response  (IEA)
inner ear morphogenesis  (IMP)
kidney development  (ISO)
lens development in camera-type eye  (IMP)
lymphocyte migration  (ISO)
male gonad development  (IMP)
mast cell differentiation  (IDA)
mesenchymal to epithelial transition  (ISO)
mesonephros development  (IMP)
natural killer cell activation  (IMP)
negative regulation of cell cycle  (IMP,ISO)
negative regulation of cell motility  (ISO)
negative regulation of cell population proliferation  (IMP)
negative regulation of cell proliferation involved in mesonephros development  (IMP)
negative regulation of DNA demethylation  (IDA,IMP)
negative regulation of DNA-templated transcription  (ISO)
negative regulation of endothelial cell apoptotic process  (ISO)
negative regulation of epithelial to mesenchymal transition  (ISO)
negative regulation of fat cell differentiation  (ISO)
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation  (IMP)
negative regulation of gene expression  (IMP)
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation  (IMP)
negative regulation of inflammatory response  (ISO)
negative regulation of interleukin-2 production  (IDA)
negative regulation of mammary gland epithelial cell proliferation  (ISO)
negative regulation of transcription by RNA polymerase II  (IBA,IDA)
negative regulation of type II interferon production  (IDA,IMP)
nephric duct formation  (IMP)
nephric duct morphogenesis  (IMP)
nervous system development  (IMP)
neuron differentiation  (IMP)
neuron migration  (IMP)
norepinephrine biosynthetic process  (IMP)
otic vesicle development  (IMP)
parathyroid gland development  (IMP)
parathyroid hormone secretion  (IMP)
pharyngeal system development  (IMP)
phosphatidylinositol 3-kinase signaling  (IMP)
positive regulation of cell differentiation  (IMP)
positive regulation of cytokine production  (IDA)
positive regulation of DNA-templated transcription  (IDA,IMP,ISO)
positive regulation of endothelial cell migration  (ISO)
positive regulation of gene expression  (IGI)
positive regulation of histone H3-K14 acetylation  (IDA,IMP)
positive regulation of histone H3-K9 acetylation  (IDA,IMP)
positive regulation of interleukin-13 production  (IMP,ISO)
positive regulation of interleukin-4 production  (IDA,IMP)
positive regulation of interleukin-5 production  (IMP,ISO)
positive regulation of miRNA transcription  (ISO)
positive regulation of protein kinase B signaling  (ISO)
positive regulation of signal transduction  (ISO)
positive regulation of T cell differentiation  (IDA)
positive regulation of T-helper 2 cell cytokine production  (IMP)
positive regulation of thyroid hormone generation  (ISO)
positive regulation of transcription by RNA polymerase II  (IBA,IDA,IGI,IMP,ISO)
positive regulation of transcription regulatory region DNA binding  (IMP,ISO)
positive regulation of ureteric bud formation  (IMP)
post-embryonic development  (IMP)
pro-T cell differentiation  (IMP)
regulation of cellular response to X-ray  (ISO)
regulation of cytokine production  (IDA)
regulation of DNA-templated transcription  (IEA)
regulation of epithelial cell differentiation  (IBA)
regulation of establishment of cell polarity  (IDA)
regulation of histone H3-K27 methylation  (IDA)
regulation of histone H3-K4 methylation  (IDA)
regulation of nephron tubule epithelial cell differentiation  (IMP)
regulation of neuron apoptotic process  (IMP)
regulation of neuron projection development  (IMP)
regulation of T-helper cell differentiation  (IMP)
regulation of transcription by RNA polymerase II  (IDA,IGI,IMP)
response to estrogen  (ISO)
response to ethanol  (ISO)
response to gamma radiation  (ISO)
response to virus  (ISO)
response to xenobiotic stimulus  (ISO)
signal transduction  (IMP)
sympathetic nervous system development  (IMP)
T cell differentiation  (IDA,ISO)
T cell differentiation in thymus  (IGI,IMP)
T cell receptor signaling pathway  (IDA)
T-helper 2 cell differentiation  (IDA)
thymic T cell selection  (IMP)
thymus development  (IMP)
TOR signaling  (IMP)
transcription by RNA polymerase II  (IMP)
type IV hypersensitivity  (ISO)
ureter maturation  (IMP)
ureter morphogenesis  (IGI)
ureteric bud formation  (IMP)
uterus development  (IMP)
ventricular septum development  (IMP)

Cellular Component
chromatin  (ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axon guidance  (IAGP)
abnormal blood coagulation  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal CD4-positive, alpha beta T cell morphology  (IAGP)
abnormal CD8-positive, alpha-beta T cell number  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear ganglion morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal cochlear outer hair cell morphology  (IAGP)
abnormal cochlear sensory epithelium morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal crista ampullaris morphology  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal double-positive T cell morphology  (IAGP)
abnormal embryo development  (IAGP)
abnormal embryonic growth/weight/body size  (IAGP)
abnormal endolymphatic duct morphology  (IAGP)
abnormal epidermal layer morphology  (IAGP)
abnormal epidermis stratum basale morphology  (IAGP)
abnormal erythrocyte morphology  (IAGP)
abnormal hair cuticle  (IAGP)
abnormal hair cycle  (IAGP)
abnormal hair follicle inner root sheath morphology  (IAGP)
abnormal hair follicle melanin granule morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle orientation  (IAGP)
abnormal hair follicle outer root sheath morphology  (IAGP)
abnormal hair growth  (IAGP)
abnormal hair shaft melanin granule distribution  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal hair texture  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal immune system cell morphology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal inner ear development  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal inner hair cell synaptic ribbon morphology  (IAGP)
abnormal mammary gland growth during lactation  (IAGP)
abnormal mammary gland luminal epithelium morphology  (IAGP)
abnormal mesonephros morphology  (IAGP)
abnormal nervous system development  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal organ of Corti morphology  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal pyloric sphincter morphology  (IAGP)
abnormal Raphe nucleus morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal skin condition  (IAGP)
abnormal skin morphology  (IAGP)
abnormal stomach smooth muscle circular layer morphology  (IAGP)
abnormal stomach smooth muscle outer longitudinal layer morphology  (IAGP)
abnormal sympathetic ganglion morphology  (IAGP)
abnormal sympathetic neuron innervation pattern  (IAGP)
abnormal T cell differentiation  (IAGP)
abnormal T cell number  (IAGP)
abnormal T cell subpopulation ratio  (IAGP)
abnormal vestibular ganglion morphology  (IAGP)
abnormal vibrissa morphology  (IAGP)
abnormal Wolffian duct morphology  (IAGP)
absent cochlear hair cells  (IAGP)
absent common crus  (IAGP)
absent distortion product otoacoustic emissions  (IAGP)
absent nipple  (IAGP)
absent semicircular canals  (IAGP)
absent subcutaneous adipose tissue  (IAGP)
absent ureteric bud  (IAGP)
absent utricle  (IAGP)
absent vestibular saccule  (IAGP)
absent Wolffian ducts  (IAGP)
alopecia  (IEA)
arrested T cell differentiation  (IAGP)
blepharoptosis  (IAGP)
cochlear ganglion degeneration  (IAGP)
cochlear hair cell degeneration  (IAGP)
cochlear inner hair cell degeneration  (IAGP)
cochlear outer hair cell degeneration  (IAGP)
curly vibrissae  (IEA)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased CD4-positive, alpha beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased cochlear coiling  (IAGP)
decreased cochlear hair cell number  (IAGP)
decreased double-negative T cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased eosinophil cell number  (IAGP)
decreased gamma-delta T cell number  (IAGP)
decreased IgE level  (IAGP)
decreased interleukin-13 secretion  (IAGP)
decreased interleukin-4 secretion  (IAGP)
decreased organ of Corti supporting cell number  (IAGP)
decreased serotonin level  (IAGP)
decreased T cell number  (IAGP)
decreased T-helper 2 cell number  (IAGP)
decreased thymocyte number  (IAGP)
degeneration of organ of Corti supporting cells  (IAGP)
delayed hair appearance  (IAGP)
delayed inner ear development  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged sebaceous gland  (IAGP)
epidermal hyperplasia  (IAGP)
focal dorsal hair loss  (IAGP)
hyperkeratosis  (IAGP)
impaired skin barrier function  (IAGP)
increased apoptosis  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased susceptibility to parasitic infection  (IAGP)
increased T cell apoptosis  (IAGP)
increased T-helper 1 cell number  (IAGP)
inner ear cyst  (IAGP)
inner ear hypoplasia  (IAGP)
lactation failure  (IAGP)
narrow eye opening  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
organ of Corti degeneration  (IAGP)
perinatal lethality  (IAGP)
pillar cell degeneration  (IAGP)
postnatal growth retardation  (IAGP)
prenatal lethality  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
progressive hair loss  (IAGP)
scaly skin  (IAGP)
sensorineural hearing loss  (IAGP)
short hair  (IAGP)
short vibrissae  (IAGP)
small otic vesicle  (IAGP)
small superior cervical ganglion  (IAGP)
small thymus  (IAGP)
sparse hair  (IAGP)
thick epidermis  (IAGP)
thick hair follicle outer root sheath  (IAGP)
thin dermal layer  (IAGP)
waved hair  (IAGP)
weight loss  (IAGP)
wrinkled skin  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Maternal Endotoxin Exposure Attenuate Allergic Airway Disease in Infant Rats. Cao L, etal., Am J Physiol Lung Cell Mol Physiol. 2010 Jan 29.
2. GATA-3 expression in the development of anterior chamber associated immune deviation. Fu T, etal., Chin Med J (Engl). 2005 Dec 5;118(23):2000-4.
3. Structure and expression of the human GATA3 gene. Labastie MC, etal., Genomics 1994 May 1;21(1):1-6.
4. Alterations of T helper lymphocyte subpopulations in sepsis, severe sepsis, and septic shock: a prospective observational study. Li J, etal., Inflammation. 2015;38(3):995-1002. doi: 10.1007/s10753-014-0063-3.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Gene expression of the GATA-3 transcription factor is increased in atopic asthma. Nakamura Y, etal., J Allergy Clin Immunol. 1999 Feb;103(2 Pt 1):215-22.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
11. Jak2 is essential for signaling through a variety of cytokine receptors. Parganas E, etal., Cell 1998 May 1;93(3):385-95.
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. GATA3 haplo-insufficiency causes human HDR syndrome. Van Esch H, etal., Nature 2000 Jul 27;406(6794):419-22.
17. Effect and mechanism of ligustrazine on Th1/Th2 cytokines in a rat asthma model. Xiong L, etal., Am J Chin Med. 2007;35(6):1011-20.
Additional References at PubMed
PMID:1744088   PMID:2017177   PMID:7550312   PMID:7720565   PMID:7862157   PMID:7956841   PMID:8455608   PMID:8945476   PMID:9043071   PMID:9435283   PMID:9576834   PMID:9769172  
PMID:9819382   PMID:9859212   PMID:9882482   PMID:9891089   PMID:10208738   PMID:10349636   PMID:10357893   PMID:10366650   PMID:10367888   PMID:10382753   PMID:10439272   PMID:10447238  
PMID:10549629   PMID:10556076   PMID:10631184   PMID:10835639   PMID:10922068   PMID:11017920   PMID:11042159   PMID:11076861   PMID:11093124   PMID:11135239   PMID:11217851   PMID:11441075  
PMID:11441076   PMID:11724781   PMID:11793341   PMID:11970965   PMID:12027437   PMID:12041667   PMID:12077251   PMID:12112475   PMID:12127263   PMID:12370337   PMID:12477932   PMID:12648458  
PMID:12651891   PMID:12835475   PMID:12871641   PMID:12874121   PMID:12885554   PMID:12897786   PMID:12923059   PMID:14512296   PMID:14514727   PMID:14534138   PMID:14602809   PMID:14610062  
PMID:14643687   PMID:14670303   PMID:14681479   PMID:14769923   PMID:14973276   PMID:15003631   PMID:15084464   PMID:15087456   PMID:15133515   PMID:15163631   PMID:15207274   PMID:15215207  
PMID:15242798   PMID:15253936   PMID:15306564   PMID:15329349   PMID:15339983   PMID:15378057   PMID:15475959   PMID:15489334   PMID:15499550   PMID:15499560   PMID:15507491   PMID:15514019  
PMID:15525534   PMID:15618518   PMID:15632071   PMID:15662016   PMID:15703280   PMID:15733533   PMID:15737933   PMID:15769480   PMID:15829521   PMID:15929941   PMID:15941711   PMID:15963784  
PMID:15975924   PMID:15994092   PMID:16020526   PMID:16055713   PMID:16085486   PMID:16141072   PMID:16141073   PMID:16172258   PMID:16212886   PMID:16216236   PMID:16292344   PMID:16319112  
PMID:16325169   PMID:16326147   PMID:16354917   PMID:16373364   PMID:16393972   PMID:16456016   PMID:16517715   PMID:16520391   PMID:16597514   PMID:16602821   PMID:16614350   PMID:16677628  
PMID:16773660   PMID:16782087   PMID:16806848   PMID:16887115   PMID:16914743   PMID:16916509   PMID:16923961   PMID:16943277   PMID:16984276   PMID:17011173   PMID:17013389   PMID:17046739  
PMID:17056504   PMID:17079689   PMID:17082577   PMID:17114464   PMID:17116754   PMID:17129787   PMID:17151017   PMID:17187062   PMID:17304625   PMID:17327407   PMID:17357106   PMID:17359917  
PMID:17531968   PMID:17603486   PMID:17638910   PMID:17641686   PMID:17658278   PMID:17658279   PMID:17687036   PMID:17728344   PMID:17784834   PMID:17922007   PMID:17986443   PMID:18070933  
PMID:18076286   PMID:18094025   PMID:18162042   PMID:18178845   PMID:18202227   PMID:18212046   PMID:18234236   PMID:18242514   PMID:18287559   PMID:18368538   PMID:18383037   PMID:18404215  
PMID:18424435   PMID:18471881   PMID:18480165   PMID:18501887   PMID:18505817   PMID:18586225   PMID:18593557   PMID:18621058   PMID:18684741   PMID:18692037   PMID:18701459   PMID:18714006  
PMID:18772129   PMID:18776904   PMID:18792410   PMID:18799693   PMID:18824566   PMID:18955134   PMID:18997793   PMID:19029045   PMID:19046990   PMID:19056736   PMID:19088086   PMID:19092943  
PMID:19104054   PMID:19106099   PMID:19112489   PMID:19122665   PMID:19155483   PMID:19262503   PMID:19323994   PMID:19362019   PMID:19371385   PMID:19389377   PMID:19404405   PMID:19411068  
PMID:19463901   PMID:19476657   PMID:19487454   PMID:19540218   PMID:19592096   PMID:19623612   PMID:19648923   PMID:19666510   PMID:19666821   PMID:19700764   PMID:19729201   PMID:19774072  
PMID:19793887   PMID:19796622   PMID:19797899   PMID:19801513   PMID:19850875   PMID:19877272   PMID:19881507   PMID:19913004   PMID:19933870   PMID:19934022   PMID:19956733   PMID:20040500  
PMID:20059953   PMID:20081188   PMID:20081190   PMID:20147379   PMID:20162674   PMID:20176728   PMID:20211142   PMID:20230796   PMID:20231412   PMID:20335364   PMID:20383148   PMID:20399120  
PMID:20412781   PMID:20484821   PMID:20501593   PMID:20501701   PMID:20631168   PMID:20636338   PMID:20669675   PMID:20696860   PMID:20702712   PMID:20706986   PMID:20818386   PMID:20844123  
PMID:20855530   PMID:20944002   PMID:20956546   PMID:21068058   PMID:21093383   PMID:21146598   PMID:21189289   PMID:21212101   PMID:21215373   PMID:21217760   PMID:21267068   PMID:21281623  
PMID:21320481   PMID:21338882   PMID:21357543   PMID:21383068   PMID:21403400   PMID:21460847   PMID:21464233   PMID:21508411   PMID:21510876   PMID:21521737   PMID:21523854   PMID:21536806  
PMID:21537830   PMID:21539825   PMID:21553382   PMID:21601259   PMID:21611195   PMID:21613615   PMID:21670475   PMID:21690296   PMID:21703230   PMID:21731775   PMID:21752929   PMID:21795542  
PMID:21831920   PMID:21867929   PMID:21873635   PMID:21924928   PMID:21930782   PMID:21943603   PMID:21949185   PMID:21965331   PMID:22039015   PMID:22087235   PMID:22094003   PMID:22110055  
PMID:22112437   PMID:22118525   PMID:22138715   PMID:22144916   PMID:22182523   PMID:22219353   PMID:22267605   PMID:22274697   PMID:22284677   PMID:22292060   PMID:22363783   PMID:22493062  
PMID:22529382   PMID:22544395   PMID:22588720   PMID:22627282   PMID:22705977   PMID:22745311   PMID:22751141   PMID:22771245   PMID:22801971   PMID:22912798   PMID:22922362   PMID:22930452  
PMID:22982455   PMID:22988430   PMID:22991444   PMID:23053511   PMID:23063333   PMID:23063660   PMID:23103586   PMID:23153495   PMID:23163652   PMID:23193000   PMID:23220102   PMID:23223237  
PMID:23225883   PMID:23248301   PMID:23271346   PMID:23293351   PMID:23297135   PMID:23310955   PMID:23329048   PMID:23354167   PMID:23408898   PMID:23426694   PMID:23428429   PMID:23444353  
PMID:23471993   PMID:23475960   PMID:23487314   PMID:23555309   PMID:23601684   PMID:23614009   PMID:23616576   PMID:23643632   PMID:23648511   PMID:23659281   PMID:23666531   PMID:23671187  
PMID:23684985   PMID:23708251   PMID:23732910   PMID:23733962   PMID:23804090   PMID:23816521   PMID:23851685   PMID:23920117   PMID:23934214   PMID:23974957   PMID:24056746   PMID:24115909  
PMID:24120474   PMID:24167278   PMID:24167708   PMID:24222445   PMID:24327562   PMID:24363163   PMID:24371086   PMID:24385915   PMID:24415780   PMID:24415953   PMID:24419270   PMID:24556500  
PMID:24631153   PMID:24674670   PMID:24698273   PMID:24714492   PMID:24735878   PMID:24770638   PMID:24785493   PMID:24802759   PMID:24820417   PMID:24831988   PMID:24835466   PMID:24948600  
PMID:24952961   PMID:24970776   PMID:24972638   PMID:25043027   PMID:25139858   PMID:25172496   PMID:25258321   PMID:25312496   PMID:25369423   PMID:25411508   PMID:25467979   PMID:25501630  
PMID:25512300   PMID:25516969   PMID:25546423   PMID:25555213   PMID:25617721   PMID:25661788   PMID:25680095   PMID:25738969   PMID:25861992   PMID:25917818   PMID:25993409   PMID:26109067  
PMID:26156402   PMID:26160380   PMID:26216189   PMID:26243870   PMID:26297811   PMID:26361334   PMID:26385963   PMID:26418311   PMID:26465208   PMID:26550799   PMID:26595886   PMID:26718003  
PMID:26730404   PMID:26765568   PMID:26773150   PMID:26808502   PMID:26839365   PMID:26840450   PMID:26857994   PMID:26859289   PMID:26879466   PMID:27049059   PMID:27109496   PMID:27208706  
PMID:27210758   PMID:27296697   PMID:27306493   PMID:27335460   PMID:27374105   PMID:27376470   PMID:27421859   PMID:27474166   PMID:27477290   PMID:27588406   PMID:27589684   PMID:27693352  
PMID:27694924   PMID:27789623   PMID:27806288   PMID:27820600   PMID:27833268   PMID:27856909   PMID:27870920   PMID:27878828   PMID:27965054   PMID:28031110   PMID:28082864   PMID:28096407  
PMID:28118374   PMID:28132936   PMID:28219675   PMID:28232602   PMID:28258171   PMID:28285879   PMID:28320875   PMID:28364022   PMID:28401892   PMID:28402854   PMID:28437001   PMID:28576978  
PMID:28637693   PMID:28685891   PMID:28874814   PMID:28929539   PMID:29044125   PMID:29088218   PMID:29129523   PMID:29170477   PMID:29183988   PMID:29197504   PMID:29247144   PMID:29434588  
PMID:29444422   PMID:29445148   PMID:29449451   PMID:29459093   PMID:29486619   PMID:29490983   PMID:29514917   PMID:29689292   PMID:29867344   PMID:30093726   PMID:30115228   PMID:30126893  
PMID:30177510   PMID:30179592   PMID:30291167   PMID:30295986   PMID:30377232   PMID:30456369   PMID:30523076   PMID:30593496   PMID:30649340   PMID:30758286   PMID:30872278   PMID:30929920  
PMID:30959515   PMID:31069810   PMID:31231191   PMID:31269440   PMID:31405951   PMID:31427287   PMID:31461644   PMID:31526806   PMID:31619968   PMID:31822965   PMID:31872525   PMID:31882362  
PMID:31913118   PMID:31918020   PMID:31969659   PMID:32152552   PMID:32213568   PMID:32325033   PMID:32453714   PMID:32473155   PMID:32562431   PMID:32562756   PMID:32946839   PMID:33046550  
PMID:33053343   PMID:33681192   PMID:33711282   PMID:33760131   PMID:33795231   PMID:33806085   PMID:34180951   PMID:34272563   PMID:34349220   PMID:34353913   PMID:34383890   PMID:34478649  
PMID:34644537   PMID:34976209   PMID:34994686   PMID:35105859   PMID:35278661   PMID:35354032   PMID:35438764   PMID:35711460  


Genomics

Comparative Map Data
Gata3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3929,861,889 - 9,892,762 (-)NCBIGRCm39mm39
GRCm39 Ensembl29,861,889 - 9,894,845 (-)Ensembl
GRCm3829,857,078 - 9,887,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl29,857,078 - 9,890,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv3729,778,705 - 9,800,227 (-)NCBIGRCm37mm9NCBIm37
MGSCv3629,774,931 - 9,795,629 (-)NCBImm8
Celera29,794,542 - 9,816,062 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map26.69NCBI
GATA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38108,045,333 - 8,075,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl108,045,378 - 8,075,198 (+)EnsemblGRCh38hg38GRCh38
GRCh37108,096,651 - 8,117,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36108,136,673 - 8,157,170 (+)NCBINCBI36hg18NCBI36
Build 34108,136,672 - 8,157,170NCBI
Celera108,022,059 - 8,042,539 (+)NCBI
Cytogenetic Map10p14NCBI
HuRef108,015,002 - 8,035,471 (+)NCBIHuRef
CHM1_1108,096,969 - 8,117,441 (+)NCBICHM1_1
T2T-CHM13v2.0108,055,568 - 8,076,094 (+)NCBI
Gata3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21768,643,760 - 68,666,000 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1768,643,873 - 68,665,391 (+)Ensembl
Rnor_6.01772,419,752 - 72,452,043 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1772,429,618 - 72,450,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01774,114,785 - 74,137,119 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41779,991,587 - 80,011,574 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11780,002,419 - 80,022,407 (+)NCBI
Celera1768,131,695 - 68,151,337 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Gata3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542124,457,496 - 24,478,744 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542124,448,446 - 24,477,885 (+)NCBIChiLan1.0ChiLan1.0
GATA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1108,055,853 - 8,086,271 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl108,064,207 - 8,086,272 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0108,075,951 - 8,105,573 (+)NCBIMhudiblu_PPA_v0panPan3
GATA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1228,068,143 - 28,098,445 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl228,069,051 - 28,087,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha225,104,703 - 25,134,953 (-)NCBI
ROS_Cfam_1.0228,443,699 - 28,464,623 (-)NCBI
ROS_Cfam_1.0 Ensembl228,444,605 - 28,465,652 (-)Ensembl
UMICH_Zoey_3.1225,552,826 - 25,583,058 (-)NCBI
UNSW_CanFamBas_1.0226,396,168 - 26,425,115 (-)NCBI
UU_Cfam_GSD_1.0227,112,635 - 27,142,926 (-)NCBI
Gata3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934430,614,585 - 30,645,254 (-)NCBI
SpeTri2.0NW_0049364846,780,692 - 6,800,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GATA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1063,367,663 - 63,388,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11063,367,684 - 63,397,977 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21069,582,743 - 69,601,480 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GATA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.198,101,404 - 8,122,762 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl98,101,432 - 8,123,064 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605113,489,149 - 13,518,902 (+)NCBIVero_WHO_p1.0
Gata3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247752,994,164 - 3,015,392 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247752,985,077 - 3,014,567 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
X55123  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3829,858,223 - 9,858,334UniSTSGRCm38
MGSCv3729,779,850 - 9,779,961UniSTSGRCm37
Celera29,795,687 - 9,795,798UniSTS
Cytogenetic Map2A1UniSTS
cM Map27.0UniSTS
Whitehead/MRC_RH2183.62UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3829,858,389 - 9,858,588UniSTSGRCm38
MGSCv3729,780,016 - 9,780,215UniSTSGRCm37
Celera29,795,853 - 9,796,052UniSTS
Cytogenetic Map2A1UniSTS
cM Map27.0UniSTS
cM Map27.0UniSTS
PMC186616P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3829,858,263 - 9,858,339UniSTSGRCm38
MGSCv3729,779,890 - 9,779,966UniSTSGRCm37
Celera29,795,727 - 9,795,803UniSTS
Cytogenetic Map2A1UniSTS
cM Map27.0UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS
cM Map27.0UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS
Gata3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A1UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1228
Count of miRNA genes:632
Interacting mature miRNAs:787
Transcripts:ENSMUST00000102976, ENSMUST00000130615, ENSMUST00000142305, ENSMUST00000147533, ENSMUST00000151456, ENSMUST00000153509
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA759391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH015706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH015707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X73520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z33620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000102976   ⟹   ENSMUSP00000100041
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,861,889 - 9,883,411 (-)Ensembl
GRCm38.p6 Ensembl29,857,078 - 9,878,600 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130615   ⟹   ENSMUSP00000119730
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,879,513 - 9,894,845 (-)Ensembl
GRCm38.p6 Ensembl29,874,702 - 9,890,034 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142305
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,882,701 - 9,894,813 (-)Ensembl
GRCm38.p6 Ensembl29,877,890 - 9,890,002 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147533
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,882,646 - 9,892,595 (-)Ensembl
GRCm38.p6 Ensembl29,877,835 - 9,887,784 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,867,994 - 9,878,483 (-)Ensembl
GRCm38.p6 Ensembl29,863,183 - 9,873,672 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153509
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl29,879,298 - 9,880,210 (-)Ensembl
GRCm38.p6 Ensembl29,874,487 - 9,875,399 (-)Ensembl
RefSeq Acc Id: NM_001355110   ⟹   NP_001342039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,411 (-)NCBI
GRCm3829,857,078 - 9,878,600 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355111   ⟹   NP_001342040
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,411 (-)NCBI
GRCm3829,857,078 - 9,878,600 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355112   ⟹   NP_001342041
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,411 (-)NCBI
GRCm3829,857,078 - 9,878,600 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008091   ⟹   NP_032117
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,411 (-)NCBI
GRCm3829,857,078 - 9,878,600 (-)NCBI
MGSCv3729,778,705 - 9,800,227 (-)RGD
Celera29,794,542 - 9,816,062 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497354   ⟹   XP_006497417
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,185 (-)NCBI
GRCm3829,857,078 - 9,878,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247532   ⟹   XP_030103392
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,892,762 (-)NCBI
GRCm3829,857,078 - 9,887,953 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247533   ⟹   XP_030103393
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3929,861,889 - 9,883,131 (-)NCBI
GRCm3829,857,078 - 9,878,321 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032117   ⟸   NM_008091
- Peptide Label: isoform 1
- UniProtKB: P23772 (UniProtKB/Swiss-Prot),   Q3U0R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497417   ⟸   XM_006497354
- Peptide Label: isoform X1
- UniProtKB: P23772 (UniProtKB/Swiss-Prot),   Q3U0R5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030103392   ⟸   XM_030247532
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001342041   ⟸   NM_001355112
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001342039   ⟸   NM_001355110
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001342040   ⟸   NM_001355111
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030103393   ⟸   XM_030247533
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000119730   ⟸   ENSMUST00000130615
RefSeq Acc Id: ENSMUSP00000100041   ⟸   ENSMUST00000102976
Protein Domains
GATA-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23772-F1-model_v2 AlphaFold P23772 1-443 view protein structure

Promoters
RGD ID:6831427
Promoter ID:MM_KWN:27664
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_008091,   UC008IHD.1,   UC008IHE.1,   UC008IHG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3629,799,106 - 9,801,207 (-)MPROMDB
RGD ID:6876302
Promoter ID:EPDNEW_M1602
Type:initiation region
Name:Gata3_2
Description:Mus musculus GATA binding protein 3 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1603  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3829,877,885 - 9,877,945EPDNEW
RGD ID:6876304
Promoter ID:EPDNEW_M1603
Type:multiple initiation site
Name:Gata3_1
Description:Mus musculus GATA binding protein 3 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1602  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3829,878,590 - 9,878,650EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95663 AgrOrtholog
Ensembl Genes ENSMUSG00000015619 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000100041 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000119730.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000102976 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130615.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GATA-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TF_GATA-2/3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcription_factor_GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14462 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95663 ENTREZGENE
NCBI Gene 14462 ENTREZGENE
PANTHER PTHR10071 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10071:SF106 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gata3 PhenoGen
PIRSF TF_GATA-1/2/3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GATAZNFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GATA_ZN_FINGER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GATA_ZN_FINGER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6QTY0_MOUSE UniProtKB/TrEMBL
  GATA3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TZD6_MOUSE UniProtKB/TrEMBL
  Q3TZS0_MOUSE UniProtKB/TrEMBL
  Q3U0R5 ENTREZGENE, UniProtKB/TrEMBL
  Q3U223_MOUSE UniProtKB/TrEMBL