Ccr6 (chemokine (C-C motif) receptor 6) - Rat Genome Database

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Gene: Ccr6 (chemokine (C-C motif) receptor 6) Mus musculus
Analyze
Symbol: Ccr6
Name: chemokine (C-C motif) receptor 6
RGD ID: 1318407
MGI Page MGI
Description: Enables C-C chemokine binding activity and C-C chemokine receptor activity. Involved in several processes, including immune system development; leukocyte migration; and regulation of cell motility. Located in external side of plasma membrane; sperm plasma membrane; and sperm principal piece. Is expressed in several structures, including central nervous system; gut; immune system; male reproductive gland or organ; and retina. Orthologous to human CCR6 (C-C motif chemokine receptor 6); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 1,4-phenylenediamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-C chemokine receptor type 6; CC-CKR-6; CCR-6; Cmkbr; Cmkbr6; KY411
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,454,875 - 8,477,353 (+)NCBIGRCm39mm39
GRCm39 Ensembl178,454,875 - 8,475,973 (+)Ensembl
GRCm38178,236,041 - 8,258,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,236,043 - 8,257,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37178,428,908 - 8,450,006 (+)NCBIGRCm37mm9NCBIm37
MGSCv36178,080,700 - 8,095,301 (+)NCBImm8
Celera178,276,953 - 8,300,589 (+)NCBICelera
Cytogenetic Map17A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal alpha-beta intraepithelial T cell morphology  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal CD4-positive, alpha beta T cell morphology  (IAGP)
abnormal CD4-positive, alpha-beta intraepithelial T cell morphology  (IAGP)
abnormal CD4-positive, alpha-beta T cell physiology  (IAGP)
abnormal CD8 positive, alpha-beta intraepithelial T cell morphology  (IAGP)
abnormal choroid plexus morphology  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal effector T cell morphology  (IAGP)
abnormal follicular dendritic cell antigen presentation  (IAGP)
abnormal follicular dendritic cell physiology  (IAGP)
abnormal gut-associated lymphoid tissue morphology  (IAGP)
abnormal interleukin secretion  (IAGP)
abnormal intraepithelial T cell number  (IAGP)
abnormal lymphocyte morphology  (IAGP)
abnormal macrophage physiology  (IAGP)
abnormal myeloid dendritic cell morphology  (IAGP)
abnormal peritoneal macrophage morphology  (IAGP)
abnormal Peyer's patch follicle morphology  (IAGP)
abnormal Peyer's patch germinal center morphology  (IAGP)
abnormal Peyer's patch morphology  (IAGP)
abnormal Peyer's patch T cell area morphology  (IAGP)
abnormal spleen morphology  (IEA)
abnormal T cell physiology  (IAGP)
decreased B cell number  (IAGP)
decreased CD4-positive, alpha beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased heart rate  (IEA)
decreased IgA level  (IAGP)
decreased IgE level  (IAGP)
decreased IgG3 level  (IAGP)
decreased inflammatory response  (IAGP)
decreased interleukin-10 secretion  (IAGP)
decreased interleukin-12 secretion  (IAGP)
decreased interleukin-4 secretion  (IAGP)
decreased interleukin-5 secretion  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased macrophage cytokine production  (IAGP)
decreased macrophage nitric oxide production  (IAGP)
decreased Peyer's patch number  (IAGP)
decreased susceptibility to bacterial infection  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased susceptibility to type I hypersensitivity reaction  (IAGP)
decreased tumor necrosis factor secretion  (IAGP)
impaired eosinophil recruitment  (IAGP)
increased activated T cell number  (IAGP)
increased B-1 B cell number  (IAGP)
increased double-positive T cell number  (IAGP)
increased IgM level  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased leukocyte cell number  (IAGP)
increased susceptibility to Riboviria infection  (IAGP)
increased T cell number  (IAGP)
increased T cell proliferation  (IAGP)
no abnormal phenotype detected  (IEA)
prolonged RR interval  (IEA)
References

References - curated
1. Ayers CM, etal., Int Forum Allergy Rhinol. 2011 Jul-Aug;1(4):296-302. doi: 10.1002/alr.20046. Epub 2011 Apr 11.
2. Cassier PA, etal., BMC Cancer. 2011 May 30;11:213. doi: 10.1186/1471-2407-11-213.
3. Fernandez TD, etal., Allergy. 2008 Jun;63(6):712-9. doi: 10.1111/j.1398-9995.2007.01607.x. Epub 2008 Mar 29.
4. Hedrick MN, etal., J Clin Invest. 2009 Aug;119(8):2317-29.
5. Homey B, etal., J Immunol. 2000 Jun 15;164(12):6621-32.
6. Ichimura M, etal., J Oral Pathol Med. 2006 Mar;35(3):167-74.
7. Manthey HD, etal., Thromb Haemost. 2013 Nov 27;110(6):1267-77. doi: 10.1160/TH13-01-0017. Epub 2013 Oct 10.
8. McTigue DM, etal., J Neurosci Res. 1998 Aug 1;53(3):368-76.
9. MGD data from the GO Consortium
10. MGD IEA
11. Miyagaki T, etal., Clin Cancer Res. 2011 Dec 15;17(24):7529-38. doi: 10.1158/1078-0432.CCR-11-1192. Epub 2011 Nov 2.
12. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. Phadke AP, etal., Am J Respir Crit Care Med. 2007 Jun 1;175(11):1165-72. Epub 2007 Mar 22.
14. RGD automated import pipeline
15. RGD automated import pipeline for gene-chemical interactions
16. Shao Z, etal., J Immunol. 2009 Dec 1;183(11):7531-8. doi: 10.4049/jimmunol.0901341. Epub 2009 Nov 16.
17. Shirane J, etal., Curr Eye Res. 2004 May;28(5):297-306.
18. Tao J, etal., Eur J Dermatol. 2011 Sep-Oct;21(5):731-6. doi: 10.1684/ejd.2011.1469.
19. Terao Y, etal., Neurosci Res. 2009 May;64(1):75-82. doi: 10.1016/j.neures.2009.01.017. Epub 2009 Feb 13.
20. Villa L, etal., J Pathol. 2013 Apr;229(5):672-84. doi: 10.1002/path.4151. Epub 2013 Mar 5.
Additional References at PubMed
PMID:9139699   PMID:9862452   PMID:10349636   PMID:10843382   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11254677   PMID:11514610   PMID:11754009   PMID:12477932   PMID:12928364  
PMID:12960300   PMID:14515278   PMID:15466386   PMID:15591779   PMID:15613550   PMID:15699135   PMID:15774622   PMID:15920150   PMID:16002685   PMID:16129397   PMID:16141072   PMID:16141073  
PMID:16444257   PMID:16473831   PMID:16602821   PMID:16713979   PMID:16966255   PMID:16982869   PMID:17057190   PMID:17116734   PMID:17317260   PMID:17392163   PMID:17404315   PMID:17615242  
PMID:17694574   PMID:17882271   PMID:18025126   PMID:18086862   PMID:18258848   PMID:18504307   PMID:18606672   PMID:18691912   PMID:18698357   PMID:18706444   PMID:18987631   PMID:19050256  
PMID:19129757   PMID:19234209   PMID:19305396   PMID:19404978   PMID:19499521   PMID:19535153   PMID:19782082   PMID:19830744   PMID:19879162   PMID:20068036   PMID:20101616   PMID:20148914  
PMID:20299360   PMID:20483750   PMID:20709955   PMID:20720211   PMID:20929731   PMID:21029863   PMID:21042003   PMID:21267068   PMID:21311769   PMID:21400499   PMID:21422150   PMID:21537330  
PMID:21559338   PMID:21641376   PMID:21646718   PMID:21680896   PMID:21795597   PMID:21873635   PMID:21937703   PMID:21984702   PMID:22304915   PMID:22495297   PMID:22504651   PMID:22729248  
PMID:22796894   PMID:22895364   PMID:23028548   PMID:23034280   PMID:23064366   PMID:23159228   PMID:23160472   PMID:23221338   PMID:23293372   PMID:23395676   PMID:23420888   PMID:23477966  
PMID:23555902   PMID:23565250   PMID:23588497   PMID:23620790   PMID:23765988   PMID:23959575   PMID:24194600   PMID:24223818   PMID:24333375   PMID:24357920   PMID:24534531   PMID:24638065  
PMID:24699535   PMID:24866282   PMID:24909159   PMID:24979261   PMID:25098764   PMID:25505290   PMID:26047945   PMID:26231115   PMID:26307432   PMID:26408668   PMID:26511769   PMID:26523865  
PMID:26644347   PMID:26691857   PMID:26890063   PMID:27099134   PMID:27132989   PMID:27174992   PMID:27193261   PMID:27423018   PMID:27465674   PMID:27487469   PMID:27569912   PMID:27626380  
PMID:27982014   PMID:28115058   PMID:28580944   PMID:28684423   PMID:28746740   PMID:28972090   PMID:29097259   PMID:29186424   PMID:29262350   PMID:29285761   PMID:29695802   PMID:29984403  
PMID:30133119   PMID:30193756   PMID:30602786   PMID:30692259   PMID:30935975   PMID:31151410   PMID:31492809   PMID:31506281   PMID:31778214   PMID:32039762   PMID:32184325   PMID:32339538  
PMID:32599163   PMID:34400521  


Genomics

Comparative Map Data
Ccr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,454,875 - 8,477,353 (+)NCBIGRCm39mm39
GRCm39 Ensembl178,454,875 - 8,475,973 (+)Ensembl
GRCm38178,236,041 - 8,258,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,236,043 - 8,257,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37178,428,908 - 8,450,006 (+)NCBIGRCm37mm9NCBIm37
MGSCv36178,080,700 - 8,095,301 (+)NCBImm8
Celera178,276,953 - 8,300,589 (+)NCBICelera
Cytogenetic Map17A1NCBI
CCR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6167,111,807 - 167,139,696 (+)EnsemblGRCh38hg38GRCh38
GRCh386167,111,795 - 167,139,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376167,525,283 - 167,552,629 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366167,445,285 - 167,472,619 (+)NCBINCBI36hg18NCBI36
Build 346167,506,667 - 167,523,040NCBI
Celera6168,267,636 - 168,294,982 (+)NCBI
Cytogenetic Map6q27NCBI
HuRef6164,997,922 - 165,025,262 (+)NCBIHuRef
CHM1_16167,787,685 - 167,815,011 (+)NCBICHM1_1
Ccr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2152,474,477 - 52,508,301 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl152,474,168 - 52,498,603 (-)Ensembl
Rnor_6.0153,063,380 - 53,087,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,065,025 - 53,087,474 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,311,531 - 54,335,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,115,472 - 47,139,825 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1147,118,424 - 47,142,770 (-)NCBI
Celera148,238,928 - 48,261,505 (-)NCBICelera
Cytogenetic Map1q12NCBI
Ccr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543914,920,601 - 14,924,191 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543914,921,524 - 14,949,493 (-)NCBIChiLan1.0ChiLan1.0
CCR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16170,069,689 - 170,084,779 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6170,069,689 - 170,084,779 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06165,094,563 - 165,109,774 (+)NCBIMhudiblu_PPA_v0panPan3
CCR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,932,798 - 54,960,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,932,690 - 54,959,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,722,381 - 55,750,218 (+)NCBI
ROS_Cfam_1.0155,113,648 - 55,141,502 (+)NCBI
UMICH_Zoey_3.1155,010,269 - 55,038,459 (+)NCBI
UNSW_CanFamBas_1.0154,859,036 - 54,886,902 (+)NCBI
UU_Cfam_GSD_1.0155,484,239 - 55,512,089 (+)NCBI
Ccr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946149,431,750 - 149,438,723 (+)NCBI
SpeTri2.0NW_00493648916,669,297 - 16,689,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12,018,608 - 2,019,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112,016,600 - 2,034,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11394,865,480 - 94,894,331 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1394,865,936 - 94,894,315 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604066,673,826 - 66,688,967 (+)NCBIVero_WHO_p1.0
Ccr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478512,190,802 - 12,203,924 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH130928  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,256,742 - 8,256,957UniSTSGRCm38
MGSCv37178,449,607 - 8,449,822UniSTSGRCm37
Celera178,300,198 - 8,300,413UniSTS
Cytogenetic Map17A1UniSTS
Ccr6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38178,256,039 - 8,256,129UniSTSGRCm38
MGSCv37178,448,904 - 8,448,994UniSTSGRCm37
Celera178,299,495 - 8,299,585UniSTS
Cytogenetic Map17A1UniSTS
cM Map17 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120924747Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120924747Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125443244Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17125970523Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17125975624Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17126862710Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17126862710Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17128979566Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17128979566Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17128979566Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17130809908Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17312791337128037Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17392461526182159Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17392461548559063Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17480447727496965Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined480447745359340Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17480447746158776Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17480447747574740Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined480447765330362Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17667496240674962Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17765701129268449Mouse
13824987Flal1_mfatty liver accumulation QTL 1, females only (mouse)17800000011000000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:780
Count of miRNA genes:128
Interacting mature miRNAs:130
Transcripts:ENSMUST00000097418, ENSMUST00000164411, ENSMUST00000166348, ENSMUST00000167956, ENSMUST00000177568, ENSMUST00000180103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001190333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001190338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006523292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB009369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB016031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ222714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000097418   ⟹   ENSMUSP00000095029
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,461,358 - 8,475,959 (+)Ensembl
GRCm38.p6 Ensembl178,242,526 - 8,257,127 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164411   ⟹   ENSMUSP00000131153
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,455,044 - 8,475,973 (+)Ensembl
GRCm38.p6 Ensembl178,236,212 - 8,257,141 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166348   ⟹   ENSMUSP00000128559
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,462,643 - 8,475,923 (+)Ensembl
GRCm38.p6 Ensembl178,243,811 - 8,257,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167956   ⟹   ENSMUSP00000128529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,462,646 - 8,475,919 (+)Ensembl
GRCm38.p6 Ensembl178,243,814 - 8,257,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177568   ⟹   ENSMUSP00000137249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,462,643 - 8,475,923 (+)Ensembl
GRCm38.p6 Ensembl178,243,811 - 8,257,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000180103   ⟹   ENSMUSP00000135945
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,462,643 - 8,475,923 (+)Ensembl
GRCm38.p6 Ensembl178,243,811 - 8,257,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231340   ⟹   ENSMUSP00000156247
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,454,875 - 8,474,940 (+)Ensembl
GRCm38.p6 Ensembl178,236,043 - 8,256,108 (+)Ensembl
RefSeq Acc Id: ENSMUST00000231545   ⟹   ENSMUSP00000156324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,463,897 - 8,475,952 (+)Ensembl
GRCm38.p6 Ensembl178,245,065 - 8,257,120 (+)Ensembl
RefSeq Acc Id: ENSMUST00000232412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl178,463,890 - 8,470,395 (+)Ensembl
GRCm38.p6 Ensembl178,245,058 - 8,251,563 (+)Ensembl
RefSeq Acc Id: NM_001190333   ⟹   NP_001177262
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,454,875 - 8,475,973 (+)NCBI
GRCm38178,236,043 - 8,257,141 (+)ENTREZGENE
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190334   ⟹   NP_001177263
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,462,639 - 8,475,973 (+)NCBI
GRCm38178,243,807 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190335   ⟹   NP_001177264
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,462,639 - 8,475,973 (+)NCBI
GRCm38178,243,807 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190336   ⟹   NP_001177265
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,462,639 - 8,475,973 (+)NCBI
GRCm38178,243,807 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190337   ⟹   NP_001177266
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,462,639 - 8,475,973 (+)NCBI
GRCm38178,243,807 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001190338   ⟹   NP_001177267
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,463,890 - 8,475,973 (+)NCBI
GRCm38178,245,058 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_009835   ⟹   NP_033965
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,461,358 - 8,475,973 (+)NCBI
GRCm38178,242,526 - 8,257,141 (+)NCBI
MGSCv37178,428,908 - 8,450,006 (+)RGD
Celera178,276,953 - 8,300,589 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523286   ⟹   XP_006523349
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,454,888 - 8,477,353 (+)NCBI
GRCm38178,236,041 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523288   ⟹   XP_006523351
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,454,888 - 8,477,353 (+)NCBI
GRCm38178,236,041 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523291   ⟹   XP_006523354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,470,960 - 8,477,353 (+)NCBI
GRCm38178,252,128 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006523292   ⟹   XP_006523355
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,454,880 - 8,477,353 (+)NCBI
GRCm38178,236,041 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246186   ⟹   XP_011244488
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,470,319 - 8,477,353 (+)NCBI
GRCm38178,251,478 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011246188   ⟹   XP_011244490
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,470,960 - 8,477,353 (+)NCBI
GRCm38178,252,128 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017317220   ⟹   XP_017172709
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,464,013 - 8,477,353 (+)NCBI
GRCm38178,244,972 - 8,258,519 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036160286   ⟹   XP_036016179
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,454,888 - 8,477,353 (+)NCBI
RefSeq Acc Id: XM_036160287   ⟹   XP_036016180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39178,455,044 - 8,477,353 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001177262 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177263 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177264 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177265 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177266 (Get FASTA)   NCBI Sequence Viewer  
  NP_001177267 (Get FASTA)   NCBI Sequence Viewer  
  NP_033965 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523349 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523351 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523354 (Get FASTA)   NCBI Sequence Viewer  
  XP_006523355 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244488 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244490 (Get FASTA)   NCBI Sequence Viewer  
  XP_017172709 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016179 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016180 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI00757 (Get FASTA)   NCBI Sequence Viewer  
  AAI00758 (Get FASTA)   NCBI Sequence Viewer  
  AAI00759 (Get FASTA)   NCBI Sequence Viewer  
  AAI05670 (Get FASTA)   NCBI Sequence Viewer  
  BAA23776 (Get FASTA)   NCBI Sequence Viewer  
  BAA82443 (Get FASTA)   NCBI Sequence Viewer  
  BAC40946 (Get FASTA)   NCBI Sequence Viewer  
  BAE32567 (Get FASTA)   NCBI Sequence Viewer  
  CAA10956 (Get FASTA)   NCBI Sequence Viewer  
  EDL02125 (Get FASTA)   NCBI Sequence Viewer  
  O54689 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_033965   ⟸   NM_009835
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177262   ⟸   NM_001190333
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177263   ⟸   NM_001190334
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177264   ⟸   NM_001190335
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177265   ⟸   NM_001190336
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177266   ⟸   NM_001190337
- Peptide Label: isoform A
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001177267   ⟸   NM_001190338
- Peptide Label: isoform B
- Sequence:
RefSeq Acc Id: XP_006523355   ⟸   XM_006523292
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523349   ⟸   XM_006523286
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523351   ⟸   XM_006523288
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523354   ⟸   XM_006523291
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244488   ⟸   XM_011246186
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244490   ⟸   XM_011246188
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172709   ⟸   XM_017317220
- Peptide Label: isoform X1
- UniProtKB: O54689 (UniProtKB/Swiss-Prot),   Q542B6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000131153   ⟸   ENSMUST00000164411
RefSeq Acc Id: ENSMUSP00000137249   ⟸   ENSMUST00000177568
RefSeq Acc Id: ENSMUSP00000156247   ⟸   ENSMUST00000231340
RefSeq Acc Id: ENSMUSP00000156324   ⟸   ENSMUST00000231545
RefSeq Acc Id: ENSMUSP00000128559   ⟸   ENSMUST00000166348
RefSeq Acc Id: ENSMUSP00000128529   ⟸   ENSMUST00000167956
RefSeq Acc Id: ENSMUSP00000095029   ⟸   ENSMUST00000097418
RefSeq Acc Id: ENSMUSP00000135945   ⟸   ENSMUST00000180103
RefSeq Acc Id: XP_036016179   ⟸   XM_036160286
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016180   ⟸   XM_036160287
- Peptide Label: isoform X1
Protein Domains
G_PROTEIN_RECEP_F1_2

Promoters
RGD ID:13674700
Promoter ID:EPDNEW_M21499
Type:initiation region
Name:Ccr6_2
Description:Mus musculus chemokine (C-C motif) receptor 6 , transcript variant7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21500  EPDNEW_M21501  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38178,236,040 - 8,236,100EPDNEW
RGD ID:13674702
Promoter ID:EPDNEW_M21500
Type:initiation region
Name:Ccr6_3
Description:Mus musculus chemokine (C-C motif) receptor 6 , transcript variant7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21499  EPDNEW_M21501  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38178,245,064 - 8,245,124EPDNEW
RGD ID:13674704
Promoter ID:EPDNEW_M21501
Type:single initiation site
Name:Ccr6_1
Description:Mus musculus chemokine (C-C motif) receptor 6 , transcript variant7, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21499  EPDNEW_M21500  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38178,251,826 - 8,251,886EPDNEW
RGD ID:6827919
Promoter ID:MM_KWN:22056
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:UC008AJH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36178,437,576 - 8,438,076 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333797 AgrOrtholog
Ensembl Genes ENSMUSG00000040899 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000095029 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128529 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000128559 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000131153 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000135945 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000137249 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000156247 UniProtKB/TrEMBL
  ENSMUSP00000156324 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000097418 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000164411 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000166348 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000167956 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000177568 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000180103 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000231340 UniProtKB/TrEMBL
  ENSMUST00000231545 UniProtKB/Swiss-Prot
InterPro Chemokine_CCR6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12458 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1333797 ENTREZGENE
NCBI Gene 12458 ENTREZGENE
PANTHER PTHR10489:SF611 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccr6 PhenoGen
PRINTS CCCHEMOKINER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHEMOKINER6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A338P732_MOUSE UniProtKB/TrEMBL
  CCR6_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U467_MOUSE UniProtKB/TrEMBL
  Q542B6 ENTREZGENE, UniProtKB/TrEMBL
  Q9R1V0_MOUSE UniProtKB/TrEMBL