CCR6 (C-C motif chemokine receptor 6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CCR6 (C-C motif chemokine receptor 6) Sus scrofa
Analyze
Symbol: CCR6
Name: C-C motif chemokine receptor 6
RGD ID: 13951601
Description: INVOLVED IN chemotaxis (ortholog); DN2 thymocyte differentiation (ortholog); DN3 thymocyte differentiation (ortholog); ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); atherosclerosis (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); sperm flagellum (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Also known as: C-C chemokine receptor type 6; chemokine (C-C motif) receptor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12,018,608 - 2,019,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112,016,600 - 2,034,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
CCR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12,018,608 - 2,019,821 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112,016,600 - 2,034,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CCR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6167,111,807 - 167,139,696 (+)EnsemblGRCh38hg38GRCh38
GRCh386167,111,795 - 167,139,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376167,525,283 - 167,552,629 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366167,445,285 - 167,472,619 (+)NCBINCBI36hg18NCBI36
Build 346167,506,667 - 167,523,040NCBI
Celera6168,267,636 - 168,294,982 (+)NCBI
Cytogenetic Map6q27NCBI
HuRef6164,997,922 - 165,025,262 (+)NCBIHuRef
CHM1_16167,787,685 - 167,815,011 (+)NCBICHM1_1
Ccr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39178,454,875 - 8,477,353 (+)NCBIGRCm39mm39
GRCm39 Ensembl178,454,875 - 8,475,973 (+)Ensembl
GRCm38178,236,041 - 8,258,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl178,236,043 - 8,257,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37178,428,908 - 8,450,006 (+)NCBIGRCm37mm9NCBIm37
MGSCv36178,080,700 - 8,095,301 (+)NCBImm8
Celera178,276,953 - 8,300,589 (+)NCBICelera
Cytogenetic Map17A1NCBI
Ccr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2152,474,477 - 52,508,301 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl152,474,168 - 52,498,603 (-)Ensembl
Rnor_6.0153,063,380 - 53,087,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,065,025 - 53,087,474 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,311,531 - 54,335,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4147,115,472 - 47,139,825 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1147,118,424 - 47,142,770 (-)NCBI
Celera148,238,928 - 48,261,505 (-)NCBICelera
Cytogenetic Map1q12NCBI
Ccr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543914,920,601 - 14,924,191 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543914,921,524 - 14,949,493 (-)NCBIChiLan1.0ChiLan1.0
CCR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16170,069,689 - 170,084,779 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6170,069,689 - 170,084,779 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06165,094,563 - 165,109,774 (+)NCBIMhudiblu_PPA_v0panPan3
CCR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,932,798 - 54,960,646 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,932,690 - 54,959,740 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,722,381 - 55,750,218 (+)NCBI
ROS_Cfam_1.0155,113,648 - 55,141,502 (+)NCBI
UMICH_Zoey_3.1155,010,269 - 55,038,459 (+)NCBI
UNSW_CanFamBas_1.0154,859,036 - 54,886,902 (+)NCBI
UU_Cfam_GSD_1.0155,484,239 - 55,512,089 (+)NCBI
Ccr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946149,431,750 - 149,438,723 (+)NCBI
SpeTri2.0NW_00493648916,669,297 - 16,689,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11394,865,480 - 94,894,331 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1394,865,936 - 94,894,315 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604066,673,826 - 66,688,967 (+)NCBIVero_WHO_p1.0
Ccr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478512,190,802 - 12,203,924 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system reproductive system respiratory system
High
Medium 1 1
Low 6 2 4 1 2
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000026678   ⟹   ENSSSCP00000021406
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl12,018,608 - 2,019,821 (-)Ensembl
RefSeq Acc Id: XM_021086056   ⟹   XP_020941715
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.112,016,600 - 2,034,172 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020941715 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABJ97543 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020941715   ⟸   XM_021086056
- Sequence:
RefSeq Acc Id: ENSSSCP00000021406   ⟸   ENSSSCT00000026678
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024562 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00070027222 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000021406 UniProtKB/TrEMBL
  ENSSSCP00070046318 UniProtKB/TrEMBL
  ENSSSCP00070046319 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026678 UniProtKB/TrEMBL
  ENSSSCT00070054597 UniProtKB/TrEMBL
  ENSSSCT00070054598 UniProtKB/TrEMBL
InterPro Chemokine_CCR6 UniProtKB/TrEMBL
  Chemokine_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
NCBI Gene CCR6 ENTREZGENE
PANTHER PTHR10489:SF611 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS CCCHEMOKINER UniProtKB/TrEMBL
  CHEMOKINER6 UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt A0A4X1VXE8_PIG UniProtKB/TrEMBL
  A0FEV7_PIG UniProtKB/TrEMBL
  I3LBI5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:103047 ENTREZGENE