Il12a (interleukin 12a) - Rat Genome Database

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Gene: Il12a (interleukin 12a) Mus musculus
Analyze
Symbol: Il12a
Name: interleukin 12a
RGD ID: 732140
MGI Page MGI
Description: Enables interleukin-12 beta subunit binding activity. Contributes to cytokine activity. Acts upstream of or within several processes, including T-helper 1 cell activation; defense response to protozoan; and positive regulation of T cell activation. Located in cell surface; cytoplasm; and extracellular space. Part of interleukin-12 complex. Is expressed in brain; lung; small intestine; testis; and thymus. Human ortholog(s) of this gene implicated in hepatitis C; hepatocellular carcinoma; and primary biliary cholangitis. Orthologous to human IL12A (interleukin 12A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CLMF p35; cytotoxic lymphocyte maturation factor 35 kDa subunit; IL-12; IL-12 p35 subunit; IL-12 subunit p35; Il-12a; IL-12p35; interleukin 12a p35 subunit; interleukin-12 p35 subunit; interleukin-12 subunit alpha; Ll12a; MGC151228; MGC151232; p3; p35
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,597,977 - 68,605,881 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,597,977 - 68,605,880 (+)EnsemblGRCm39 Ensembl
GRCm38368,690,644 - 68,698,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,690,644 - 68,698,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv37368,494,566 - 68,502,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,778,573 - 68,786,454 (+)NCBIMGSCv36mm8
Celera368,820,603 - 68,828,506 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map331.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Il12aMouseasthma  IMP 4438438 RGD 
Il12aMouseasthma  IMP 4373570 RGD 
Il12aMouseChronic Hepatitis B  ISOIL12A (Homo sapiens)11097839mRNA:increased expression:liverRGD 
Il12aMouseExperimental Autoimmune Encephalomyelitis  IMP 724447 RGD 
Il12aMousehepatitis C disease_progressionISOIL12A (Homo sapiens)25440502associated with diabetes mellitusRGD 
Il12aMousehepatitis C susceptibilityISOIL12A (Homo sapiens)25440490DNA:SNP:3'UTR: rs568408( G>A)(human)RGD 
Il12aMousehepatocellular carcinoma susceptibilityISOIL12A (Homo sapiens)25440501associated with hepatitis B more ...RGD 
Il12aMousehepatocellular carcinoma susceptibilityISOIL12A (Homo sapiens)25440491DNA:SNP:3'UTR: rs568408( G>A)(human)RGD 
Il12aMousehepatocellular carcinoma susceptibilityISOIL12A (Homo sapiens)25440490associated with hepatitis C and DNA:SNP:3'UTR: rs568408( G>A)(human)RGD 
Il12aMouseprimary biliary cholangitis susceptibilityISOIL12A (Homo sapiens)25440500DNA:SNPs more ...RGD 
Il12aMouseprimary biliary cholangitis susceptibilityISOIL12A (Homo sapiens)25440489DNA:SNPs:enhancer:rs4679868 more ...RGD 
Il12aMouseprimary biliary cholangitis treatmentISOIL12A (Homo sapiens)25440498DNA:SNP: :rs62270414(human)RGD 
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Il12aMouseExperimental Neoplasms  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:17332360
Il12aMousehigh grade glioma  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:18176109
Il12aMouseHypothermia  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16369138
Il12aMouseLiver Neoplasms  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:17326190
Il12aMousemultiple sclerosis  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24076602
Il12aMousePremature Birth  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23982189
Il12aMouseprimary biliary cholangitis  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20639880
Il12aMouseReperfusion Injury  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16526316
Il12aMouseSjogren's syndrome  ISOIL12A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24097067
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Original Reference(s)
Il12aMouse(S)-nicotine multiple interactionsEXP 6480464Acetylcysteine inhibits the reaction [Nicotine results in increased secretion of [IL12A protein co-treated with IL12B protein]] more ...CTDPMID:21237301
Il12aMouse1,2-dichloroethane decreases expressionEXP 6480464ethylene dichloride results in decreased expression of IL12A mRNACTDPMID:28960355
Il12aMouse1-chloro-2,4-dinitrobenzene increases expressionISOIl12a (Rattus norvegicus)6480464Dinitrochlorobenzene results in increased expression of IL12A mRNACTDPMID:25449201
Il12aMouse1-chloro-2,4-dinitrobenzene decreases expressionEXP 6480464Dinitrochlorobenzene results in decreased expression of IL12A mRNACTDPMID:28219650
Il12aMouse17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with Progesterone] results in decreased expression of IL12A mRNACTDPMID:19693291
Il12aMouse17beta-estradiol increases expressionISOIL12A (Homo sapiens)6480464Estradiol results in increased expression of IL12A mRNACTDPMID:36828454
Il12aMouse17beta-estradiol multiple interactionsISOIL12A (Homo sapiens)6480464[Progesterone co-treated with Estradiol] inhibits the reaction [Vaccines more ...CTDPMID:20130130
Il12aMouse17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of IL12A mRNACTDPMID:19693291
Il12aMouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOIl12a (Rattus norvegicus)64804642 more ...CTDPMID:27291303
Il12aMouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:33078840
Il12aMouse2,2',5,5'-tetrachlorobiphenyl increases expressionISOIL12A (Homo sapiens)64804642 more ...CTDPMID:21703328
Il12aMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464Tetrachlorodibenzodioxin inhibits the reaction [[CpG ODN 1826 binds to and results in increased activity of TLR9 protein] results in increased secretion of [IL12A protein binds to IL12B protein]] more ...CTDPMID:21097750
Il12aMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOIL12A (Homo sapiens)6480464AHR protein affects the reaction [Tetrachlorodibenzodioxin inhibits the reaction [Lipopolysaccharides results in increased expression of IL12A mRNA]] more ...CTDPMID:27783115
Il12aMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of IL12A mRNACTDPMID:12167310
Il12aMouse2,3-bis(4-hydroxyphenyl)propionitrile multiple interactionsEXP 64804642 and 3-bis(4-hydroxyphenyl)-propionitrile inhibits the reaction [Lipopolysaccharides results in increased expression of IL12A protein]CTDPMID:30017638
Il12aMouse2,4,6-trinitrobenzenesulfonic acid increases expressionEXP 6480464Trinitrobenzenesulfonic Acid results in increased expression of IL12A mRNACTDPMID:15973123
Il12aMouse2-tert-butylhydroquinone multiple interactionsISOIL12A (Homo sapiens)64804642-tert-butylhydroquinone inhibits the reaction [lipopolysaccharide more ...CTDPMID:25680285
Il12aMouse3',5'-cyclic AMP multiple interactionsISOIL12A (Homo sapiens)6480464Cyclic AMP promotes the reaction [[Histamine results in increased activity of HRH2 protein] which results in decreased expression of IL12A protein]CTDPMID:15843518
Il12aMouse3,3',4,4',5-pentachlorobiphenyl multiple interactionsEXP 64804643 more ...CTDPMID:29216392
Il12aMouse3,3',5,5'-tetrabromobisphenol A decreases expressionEXP 6480464tetrabromobisphenol A results in decreased expression of IL12A mRNACTDPMID:33078840

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Biological Process
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Il12aMousecell migration involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousecell population proliferation acts_upstream_of_or_withinIGIMGI:107936 and MGI:965402290270 PMID:15843532MGIPMID:15843532
Il12aMousecell population proliferation acts_upstream_of_or_withinIDA 2290270 PMID:15843532MGIPMID:15843532
Il12aMousecellular response to lipopolysaccharide acts_upstream_of_or_withinIDA 2290270 PMID:19047410MGIPMID:19047410
Il12aMousecellular response to virus involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousedefense response to Gram-positive bacterium involved_inISOIL12A (Homo sapiens)9068941 PMID:1357073UniProtPMID:1357073
Il12aMousedefense response to protozoan acts_upstream_of_or_withinIDA 2290270 PMID:19047410 and PMID:19050265MGIPMID:19047410 and PMID:19050265
Il12aMousedefense response to protozoan acts_upstream_of_or_withinIGIMGI:965402290270 PMID:9348310MGIPMID:9348310
Il12aMouseextrinsic apoptotic signaling pathway involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseimmune response involved_inIEAInterPro:IPR0042812290270 InterProGO_REF:0000002
Il12aMouseinterleukin-12-mediated signaling pathway involved_inIBAPANTHER:PTN009232574 more ...2290270 GO_CentralGO_REF:0000033
Il12aMouseinterleukin-12-mediated signaling pathway involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousenegative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis acts_upstream_ofISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousenegative regulation of interleukin-17 production involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousenegative regulation of protein secretion acts_upstream_of_or_withinISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousenegative regulation of smooth muscle cell proliferation involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousenegative regulation of vascular endothelial growth factor signaling pathway acts_upstream_ofISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousepositive regulation of cell adhesion involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousepositive regulation of dendritic cell chemotaxis involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousepositive regulation of lymphocyte proliferation involved_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
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Cellular Component
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Il12aMousecell surface located_inIDA 2290270 PMID:20818394MGIPMID:20818394
Il12aMousecytoplasm located_inIDA 2290270 PMID:11737071MGIPMID:11737071
Il12aMouseendoplasmic reticulum lumen located_inTAS 2290270 ReactomeReactome:R-MMU-8950489
Il12aMouseendosome lumen located_inTAS 2290270 ReactomeReactome:R-MMU-8950510
Il12aMouseextracellular region located_inTAS 2290270 ReactomeReactome:R-MMU-9006466
Il12aMouseextracellular space located_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseextracellular space located_inIDA 2290270 PMID:15220916 and PMID:7690439MGIPMID:15220916 and PMID:7690439
Il12aMouseextracellular space is_active_inISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseGolgi lumen located_inTAS 2290270 ReactomeReactome:R-MMU-8950489 and Reactome:R-MMU-8950510
Il12aMouseinterleukin-12 complex part_ofIDA 2290270 PMID:15220916MGIPMID:15220916
Il12aMouseinterleukin-12 complex part_ofIGIMGI:965402290270 PMID:7690439MGIPMID:7690439
Il12aMouseinterleukin-12 complex part_ofISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseinterleukin-12 complex part_ofIBAPANTHER:PTN009232574 more ...2290270 GO_CentralGO_REF:0000033
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Molecular Function
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Il12aMousecytokine activity contributes_toISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousecytokine activity contributes_toIDA 2290270 PMID:11057672MGIPMID:11057672
Il12aMousecytokine activity enablesISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMousecytokine activity contributes_toIBAPANTHER:PTN009232574 more ...2290270 GO_CentralGO_REF:0000033
Il12aMousegrowth factor activity enablesIEAUniProtKB-KW:KW-03392290270 UniProtGO_REF:0000043
Il12aMousegrowth factor activity contributes_toISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseinterleukin-12 beta subunit binding enablesIPIPR:P434322290270 PMID:15220916MGIPMID:15220916
Il12aMouseinterleukin-12 beta subunit binding enablesISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseinterleukin-12 receptor binding enablesIEAInterPro:IPR0042812290270 InterProGO_REF:0000002
Il12aMouseinterleukin-12 receptor binding enablesIBAPANTHER:PTN009232574 more ...2290270 GO_CentralGO_REF:0000033
Il12aMouseinterleukin-27 binding enablesISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
Il12aMouseprotein binding enablesIPIUniProtKB:O352282290270 PMID:18033300 and PMID:20953201IntActPMID:18033300 and PMID:20953201
Il12aMouseprotein heterodimerization activity enablesISOUniProtKB:P294592290270 GO_CentralGO_REF:0000119
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Imported Annotations - KEGG (archival)

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Il12aMouseallograft rejection pathway  IEA 6907045 KEGGmmu:05330
Il12aMouseChagas disease pathway  IEA 6907045 KEGGmmu:05142
Il12aMouseEntamoebiasis pathway  IEA 6907045 KEGGmmu:05146
Il12aMouseinfluenza A pathway  IEA 6907045 KEGGmmu:05164
Il12aMouseJak-Stat signaling pathway   IEA 6907045 KEGGmmu:04630
Il12aMouseLeishmaniasis pathway  IEA 6907045 KEGGmmu:05140
Il12aMousemalaria pathway  IEA 6907045 KEGGmmu:05144
Il12aMousemeasles pathway  IEA 6907045 KEGGmmu:05162
Il12aMouseRetinoic acid-inducible gene (RIG) I-like receptor signaling pathway  IEA 6907045 KEGGmmu:04622
Il12aMousesleeping sickness pathway  IEA 6907045 KEGGmmu:05143
Il12aMouseToll-like receptor signaling pathway   IEA 6907045 KEGGmmu:04620
Il12aMousetoxoplasmosis pathway  IEA 6907045 KEGGmmu:05145
Il12aMousetuberculosis pathway  IEA 6907045 KEGGmmu:05152
Il12aMousetype 1 diabetes mellitus pathway  IEA 6907045 KEGGmmu:04940
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Imported Annotations - PID (archival)

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Il12aMouseinterleukin-12 signaling pathway  ISOIL12A (Homo sapiens)6484113 PIDPID:200045
Il12aMouseinterleukin-27 signaling pathway  ISOIL12A (Homo sapiens)6484113 PIDPID:200028
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Il12aMouseabnormal CD4-positive, alpha-beta T cell physiology  IAGP 5509061 MGIPMID:8766560
Il12aMouseabnormal interferon secretion  IAGP 5509061 MGIPMID:17082625
Il12aMouseabnormal NK cell physiology  IAGP 5509061 MGIPMID:18656388
Il12aMouseabnormal NK cell physiology  IAGP 5509061 MGIPMID:12370359
Il12aMousedecreased circulating interferon-gamma level  IAGP 5509061 MGIPMID:10209048
Il12aMousedecreased circulating interferon-gamma level  IAGP 5509061 MGIPMID:12370359
Il12aMousedecreased circulating interleukin-12 level  IAGP 5509061 MGIPMID:10209048
Il12aMousedecreased susceptibility to bacterial infection  IAGP 5509061 MGIPMID:17082625
Il12aMousedecreased susceptibility to experimental autoimmune encephalomyelitis  IAGP 5509061 MGIPMID:17277169
Il12aMousedecreased susceptibility to type IV hypersensitivity reaction  IAGP 5509061 MGIPMID:8766560
Il12aMouseimpaired natural killer cell mediated cytotoxicity  IAGP 5509061 MGIPMID:17389237
Il12aMouseincreased circulating HDL cholesterol level  IEA 5509061 MGI 
Il12aMouseincreased incidence of tumors by chemical induction  IAGP 5509061 MGIPMID:16688182
Il12aMouseincreased susceptibility to Herpesvirales infection  IEA 5509061 MGI 
Il12aMouseincreased susceptibility to parasitic infection  IAGP 5509061 MGIPMID:8766560
Il12aMouseincreased susceptibility to xenobiotic induced morbidity/mortality  IAGP 5509061 MGIPMID:15240709
Il12aMouselung inflammation  IAGP 5509061 MGIPMID:17082625
Il12aMousevertebral fusion  IEA 5509061 MGI 
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Reference Title
Reference Citation
1. Calcineurin inhibitors and the IL12A locus influence risk of recurrent primary biliary cirrhosis after liver transplantation. Carbone M, etal., Am J Transplant. 2013 Apr;13(4):1110-1111. doi: 10.1111/ajt.12132. Epub 2013 Feb 22.
2. IL12 Gene Polymorphism in Association with Hepatocellular Carcinoma in HCV-infected Egyptian Patients. Elsayed HM, etal., Immunol Invest. 2017 Feb;46(2):123-133. doi: 10.1080/08820139.2016.1229789. Epub 2016 Nov 7.
3. IL-12p35-deficient mice are susceptible to experimental autoimmune encephalomyelitis: evidence for redundancy in the IL-12 system in the induction of central nervous system autoimmune demyelination. Gran B, etal., J Immunol 2002 Dec 15;169(12):7104-10.
4. Primary biliary cirrhosis associated with HLA, IL12A, and IL12RB2 variants. Hirschfield GM, etal., N Engl J Med. 2009 Jun 11;360(24):2544-55. doi: 10.1056/NEJMoa0810440. Epub 2009 May 20.
5. Serum levels of Interleukins 1-Alpha & 12 as Predictors of Disease Progression in Hepatitis C Diabetic Patients. Khalil M, etal., Egypt J Immunol. 2018 Jan;25(1):181-190.
6. Association of IL12A Expression Quantitative Trait Loci (eQTL) With Primary Biliary Cirrhosis in a Chinese Han Population. Li P, etal., Medicine (Baltimore). 2016 May;95(19):e3665. doi: 10.1097/MD.0000000000003665.
7. IL12 polymorphisms, HBV infection and risk of hepatocellular carcinoma in a high-risk Chinese population. Liu L, etal., Int J Cancer. 2011 Apr 1;128(7):1692-6. doi: 10.1002/ijc.25488. Epub 2010 Jun 2.
8. IL-12 contributes to allergen-induced airway inflammation in experimental asthma. Meyts I, etal., J Immunol. 2006 Nov 1;177(9):6460-70.
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Immunomodulatory effects of viral TLR ligands on experimental asthma depend on the additive effects of IL-12 and IL-10. Sel S, etal., J Immunol. 2007 Jun 15;178(12):7805-13.
16. Genetic variants in IL12 influence both hepatitis B virus clearance and HBV-related hepatocellular carcinoma development in a Chinese male population. Tan A, etal., Tumour Biol. 2016 May;37(5):6343-8. doi: 10.1007/s13277-015-4520-x. Epub 2015 Dec 2.
17. Up-regulation of IL-12 expression in patients with chronic hepatitis B is mediated by the PI3K/Akt pathway. Wang HW, etal., Mol Cell Biochem. 2015 Sep;407(1-2):135-42. doi: 10.1007/s11010-015-2463-6. Epub 2015 Jun 11.
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PMID:1350290   PMID:7512032   PMID:7565674   PMID:7606797   PMID:7608551   PMID:7608555   PMID:7636252   PMID:7650381   PMID:7690439   PMID:7690440   PMID:7697544   PMID:7719935  
PMID:7722464   PMID:7836934   PMID:7843232   PMID:7853541   PMID:7890716   PMID:7906942   PMID:7908914   PMID:7909536   PMID:7930611   PMID:7930625   PMID:7963574   PMID:8097524  
PMID:8557982   PMID:8566070   PMID:8584935   PMID:8605935   PMID:8611715   PMID:8613697   PMID:8630732   PMID:8647196   PMID:8661733   PMID:8661735   PMID:8702400   PMID:8720612  
PMID:8752918   PMID:8766560   PMID:8933280   PMID:8943050   PMID:8977288   PMID:8995720   PMID:9348310   PMID:9402110   PMID:9444325   PMID:9482910   PMID:9502787   PMID:9515809  
PMID:9551892   PMID:9558103   PMID:9570526   PMID:9647215   PMID:9743382   PMID:9878080   PMID:9916727   PMID:9933080   PMID:9933106   PMID:10072260   PMID:10073981   PMID:10075980  
PMID:10199581   PMID:10201930   PMID:10209048   PMID:10221644   PMID:10233771   PMID:10320373   PMID:10335479   PMID:10349636   PMID:10358203   PMID:10375558   PMID:10395644   PMID:10395683  
PMID:10415056   PMID:10427977   PMID:10452994   PMID:10457211   PMID:10594747   PMID:10604999   PMID:10605032   PMID:10667588   PMID:10671189   PMID:10741399   PMID:10779748   PMID:11023473  
PMID:11042159   PMID:11046000   PMID:11057672   PMID:11076861   PMID:11114383   PMID:11118000   PMID:11145697   PMID:11160340   PMID:11197687   PMID:11207316   PMID:11217851   PMID:11412311  
PMID:11544324   PMID:11673544   PMID:11673569   PMID:11737071   PMID:11739515   PMID:11782017   PMID:11786421   PMID:11801672   PMID:11818386   PMID:11920565   PMID:11937300   PMID:11986256  
PMID:12058253   PMID:12165484   PMID:12189243   PMID:12193738   PMID:12223525   PMID:12370359   PMID:12396623   PMID:12414961   PMID:12429708   PMID:12466851   PMID:12477932   PMID:12516540  
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Il12a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39368,597,977 - 68,605,881 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl368,597,977 - 68,605,880 (+)EnsemblGRCm39 Ensembl
GRCm38368,690,644 - 68,698,550 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl368,690,644 - 68,698,547 (+)EnsemblGRCm38mm10GRCm38
MGSCv37368,494,566 - 68,502,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36368,778,573 - 68,786,454 (+)NCBIMGSCv36mm8
Celera368,820,603 - 68,828,506 (+)NCBICelera
Cytogenetic Map3E1NCBI
cM Map331.92NCBI
IL12A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383159,988,835 - 159,996,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3159,988,835 - 159,996,019 (+)EnsemblGRCh38hg38GRCh38
GRCh373159,706,622 - 159,713,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363161,189,323 - 161,196,500 (+)NCBINCBI36Build 36hg18NCBI36
Build 343161,189,330 - 161,196,507NCBI
Celera3158,128,398 - 158,135,579 (+)NCBICelera
Cytogenetic Map3q25.33NCBI
HuRef3157,102,994 - 157,110,193 (+)NCBIHuRef
CHM1_13159,669,641 - 159,676,836 (+)NCBICHM1_1
T2T-CHM13v2.03162,763,550 - 162,770,734 (+)NCBIT2T-CHM13v2.0
Il12a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82155,275,734 - 155,282,997 (+)NCBIGRCr8
mRatBN7.22152,965,769 - 152,973,035 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2152,965,769 - 152,972,734 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2160,091,860 - 160,098,803 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02158,142,380 - 158,149,321 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02152,775,143 - 152,782,090 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02165,076,945 - 165,083,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2165,076,607 - 165,084,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02184,430,744 - 184,437,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42158,710,261 - 158,717,689 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12158,660,223 - 158,667,652 (+)NCBI
Celera2147,317,946 - 147,324,898 (+)NCBICelera
Cytogenetic Map2q32NCBI
Il12a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544810,611,131 - 10,617,911 (+)NCBIChiLan1.0ChiLan1.0
IL12A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22157,926,204 - 157,935,673 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13157,930,880 - 157,942,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03157,011,675 - 157,019,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13165,061,505 - 165,068,666 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3165,061,505 - 165,068,666 (+)Ensemblpanpan1.1panPan2
IL12A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13426,125,529 - 26,133,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3426,124,770 - 26,133,550 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3430,167,784 - 30,175,056 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03426,181,526 - 26,189,271 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3426,180,963 - 26,189,280 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13426,112,551 - 26,119,731 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03426,072,972 - 26,080,252 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03426,312,100 - 26,319,473 (+)NCBIUU_Cfam_GSD_1.0
Il12a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560283,553,229 - 83,559,894 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365196,175,261 - 6,180,396 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365196,166,060 - 6,180,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL12A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1399,733,394 - 99,741,078 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11399,733,394 - 99,741,078 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213108,066,792 - 108,074,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL12A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11530,887,048 - 30,896,577 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1530,887,897 - 30,894,550 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660413,416,998 - 3,424,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il12a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473037,787,909 - 37,794,940 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473037,787,772 - 37,794,871 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Il12a
534 total Variants

Predicted Target Of
Summary Value
Count of predictions:296
Count of miRNA genes:125
Interacting mature miRNAs:133
Transcripts:ENSMUST00000029345, ENSMUST00000107816
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse

1 to 10 of 37 rows
M86672  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38368,698,173 - 68,698,320UniSTSGRCm38
MGSCv37368,502,095 - 68,502,242UniSTSGRCm37
Celera368,828,132 - 68,828,279UniSTS
Cytogenetic Map3E1UniSTS
cM Map337.0UniSTS
Whitehead/MRC_RH3632.62UniSTS






1 to 19 of 19 rows
RefSeq Transcripts NM_001159424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH004858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV363060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D63334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M86672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

Ensembl Acc Id: ENSMUST00000029345   ⟹   ENSMUSP00000029345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,597,977 - 68,605,880 (+)Ensembl
GRCm38.p6 Ensembl368,690,644 - 68,698,547 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107816   ⟹   ENSMUSP00000103446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,598,685 - 68,605,876 (+)Ensembl
GRCm38.p6 Ensembl368,691,424 - 68,698,543 (+)Ensembl
Ensembl Acc Id: ENSMUST00000191910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,601,326 - 68,605,356 (+)Ensembl
GRCm38.p6 Ensembl368,693,993 - 68,698,023 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192812
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,601,354 - 68,605,878 (+)Ensembl
GRCm38.p6 Ensembl368,694,021 - 68,698,545 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,598,860 - 68,605,424 (+)Ensembl
GRCm38.p6 Ensembl368,691,527 - 68,698,091 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl368,601,354 - 68,605,880 (+)Ensembl
GRCm38.p6 Ensembl368,694,021 - 68,698,547 (+)Ensembl
RefSeq Acc Id: NM_001159424   ⟹   NP_001152896
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,597,977 - 68,605,881 (+)NCBI
GRCm38368,690,644 - 68,698,550 (+)NCBI
MGSCv37368,494,566 - 68,502,469 (+)RGD
Celera368,820,603 - 68,828,509 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001410417   ⟹   NP_001397346
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,598,685 - 68,605,881 (+)NCBI
RefSeq Acc Id: NM_001410418   ⟹   NP_001397347
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,599,263 - 68,605,881 (+)NCBI
RefSeq Acc Id: NM_001410419   ⟹   NP_001397348
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,601,372 - 68,605,881 (+)NCBI
RefSeq Acc Id: NM_001410420   ⟹   NP_001397349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,601,074 - 68,605,881 (+)NCBI
RefSeq Acc Id: NM_008351   ⟹   NP_032377
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39368,598,685 - 68,605,881 (+)NCBI
GRCm38368,691,424 - 68,698,550 (+)NCBI
MGSCv37368,494,566 - 68,502,469 (+)RGD
Celera368,820,603 - 68,828,509 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032377   ⟸   NM_008351
- Peptide Label: isoform 2 precursor
- UniProtKB: P43431 (UniProtKB/Swiss-Prot),   Q549G3 (UniProtKB/TrEMBL),   F8WI71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001152896   ⟸   NM_001159424
- Peptide Label: isoform 2 precursor
- UniProtKB: P43431 (UniProtKB/Swiss-Prot),   Q549G3 (UniProtKB/TrEMBL),   F8WI71 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000029345   ⟸   ENSMUST00000029345
Ensembl Acc Id: ENSMUSP00000103446   ⟸   ENSMUST00000107816
RefSeq Acc Id: NP_001397346   ⟸   NM_001410417
- Peptide Label: isoform 3 precursor
- UniProtKB: F8WI71 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-P43431-F1-model_v2 AlphaFold P43431 1-215 view protein structure

RGD ID:6880852
Promoter ID:EPDNEW_M3877
Type:initiation region
Name:Il12a_1
Description:Mus musculus interleukin 12a , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38368,691,381 - 68,691,441EPDNEW


1 to 20 of 20 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000027776 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000029345 ENTREZGENE
  ENSMUST00000107816 ENTREZGENE
  ENSMUST00000107816.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.10 UniProtKB/Swiss-Prot
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot
  IL-12_alpha UniProtKB/Swiss-Prot
  IL-12_family_cytokines UniProtKB/Swiss-Prot
KEGG Report mmu:16159 UniProtKB/Swiss-Prot
MGD MGI:96539 ENTREZGENE
NCBI Gene 16159 ENTREZGENE
PANTHER INTERLEUKIN-12 SUBUNIT ALPHA UniProtKB/Swiss-Prot
  INTERLEUKIN-12 SUBUNIT BETA-RELATED UniProtKB/Swiss-Prot
Pfam IL12 UniProtKB/Swiss-Prot
PhenoGen Il12a PhenoGen
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot
UniProt F8WI71 ENTREZGENE, UniProtKB/TrEMBL
  IL12A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q549G3 ENTREZGENE, UniProtKB/TrEMBL
  Q9QUT1_MOUSE UniProtKB/TrEMBL
1 to 20 of 20 rows