Cd8a (CD8 antigen, alpha chain) - Rat Genome Database

Name: Cd8a
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cd8a (CD8 antigen, alpha chain) Mus musculus

Analyze

Symbol:

Cd8a

Name:

CD8 antigen, alpha chain

RGD ID:

10317

MGI Page

MGI

Description:

Exhibits identical protein binding activity. Involved in several processes, including cytotoxic T cell differentiation; defense response to virus; and positive regulation of calcium-mediated signaling. Localizes to external side of plasma membrane. Is expressed in several structures, including endocrine gland; exocrine gland; genitourinary system; gut; and hemolymphoid system gland. Orthologous to human CD8A (CD8a molecule); PARTICIPATES IN interleukin-12 signaling pathway; antigen processing and presentation pathway; primary immunodeficiency pathway; INTERACTS WITH (D-Ala(2)-mephe(4)-gly-ol(5))enkephalin; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

BB154331; Ly-; Ly-2; Ly-3; Ly-35; Ly-B; Lyt-; Lyt-2; Lyt-2.1 lymphocyte differentiation antigen (AA at 100); T-cell surface glycoprotein CD8 alpha chain; T-cell surface glycoprotein Lyt-2

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD8A (CD8a molecule)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cd8a (CD8a molecule)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cd8a (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD8A (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD8A (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd8a (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD8A (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CD8A (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cd8a (CD8a molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cd8a (CD8a molecule)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CD8A (CD8a molecule)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	cd8a (CD8a molecule)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB\|ZFIN)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,350,411 - 71,356,155 (+)	NCBI	GRCm39		mm39
GRCm38	6	71,373,427 - 71,379,171 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,373,427 - 71,379,173 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	71,323,421 - 71,329,165 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	71,302,936 - 71,308,680 (+)	NCBI			mm8
Celera	6	73,452,794 - 73,458,537 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	32.14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CD8 Deficiency, Familial (ISO)

chronic obstructive pulmonary disease (ISO)

COVID-19 (ISO)

Spontaneous Abortions (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

(D-Ala(2)-mephe(4)-gly-ol(5))enkephalin (EXP)

(R)-lipoic acid (ISO)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

acetylsalicylic acid (ISO)

acrolein (EXP)

aflatoxin B1 (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

buta-1,3-diene (EXP)

butanal (ISO)

carbon nanotube (EXP)

chloroprene (EXP)

cisplatin (ISO)

cycloheximide (ISO)

cyclophosphamide (EXP)

cytarabine (ISO)

decabromodiphenyl ether (ISO)

dexamethasone (EXP)

dichloroacetic acid (EXP)

dichloromethane (ISO)

diethylstilbestrol (EXP)

endosulfan (ISO)

ethylbenzene (ISO)

flavonoids (ISO)

fluoxetine (EXP)

fonofos (ISO)

gentamycin (ISO)

glycidol (ISO)

lipoic acid (ISO)

methcathinone (ISO)

methimazole (ISO)

methotrexate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

oxaliplatin (ISO)

parathion (ISO)

PCB138 (EXP)

pentanal (ISO)

phenacetin (ISO)

phenylhydrazine (ISO)

pirinixic acid (EXP)

propanal (ISO)

raloxifene (ISO)

resveratrol (EXP)

silicon dioxide (EXP)

sodium arsenite (ISO)

Soman (ISO)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (ISO)

topotecan (ISO)

trichloroethene (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adaptive immune response (IEA)

cell surface receptor signaling pathway (IBA,IDA)

cytotoxic T cell differentiation (IBA,IMP)

defense response to virus (IDA)

immune system process (IEA)

positive regulation of calcium-mediated signaling (IDA)

T cell activation (ISO)

T cell mediated immunity (IBA,IMP)

Cellular Component

cell surface (IDA)

external side of plasma membrane (IBA,IDA,ISO)

integral component of membrane (IEA)

membrane (IEA)

plasma membrane (ISO)

plasma membrane raft (ISO)

Molecular Function

identical protein binding (IPI)

MHC class I protein complex binding (ISO)

protein binding (IPI,ISO)

protein kinase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

antigen processing and presentation pathway (IEA)

interleukin-12 signaling pathway (ISO)

primary immunodeficiency pathway (IEA)

T cell receptor signaling pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal CD4-positive T cell differentiation (IAGP)

abnormal CD8-positive, alpha beta T cell morphology (IAGP)

abnormal CD8-positive, alpha-beta T cell differentiation (IAGP)

abnormal CD8-positive, alpha-beta T cell physiology (IEA)

abnormal cytotoxic T cell physiology (IAGP)

abnormal dendritic cell morphology (IAGP)

abnormal double-negative T cell morphology (IAGP)

abnormal double-positive T cell morphology (IAGP)

abnormal gamma-delta intraepithelial T cell morphology (IAGP)

abnormal gamma-delta T cell number (IAGP)

abnormal positive T cell selection (IAGP)

abnormal response to transplant (IAGP)

abnormal skin condition (IAGP)

abnormal spleen B cell follicle morphology (IAGP)

abnormal T cell differentiation (IAGP)

abnormal T cell morphology (IAGP)

abnormal T cell number (IAGP)

abnormal T cell physiology (IAGP)

abnormal T cell subpopulation ratio (IAGP)

absent CD4-positive, alpha beta T cells (IAGP)

absent CD8-positive, alpha-beta T cells (IAGP)

decreased CD4-positive, alpha beta T cell number (IAGP)

decreased CD8-positive, alpha-beta T cell number (IAGP)

decreased cytotoxic T cell cytolysis (IAGP)

decreased double-positive T cell number (IAGP)

demyelination (IAGP)

increased anti-nuclear antigen antibody level (IAGP)

increased CD4-positive, alpha beta T cell number (IAGP)

increased CD8-positive, alpha-beta memory T cell proliferation (IEA)

increased CD8-positive, alpha-beta T cell number (IAGP)

increased IgG1 level (IAGP)

increased IgG2a level (IAGP)

increased IgG2b level (IAGP)

increased length of allograft survival (IAGP)

increased monocyte cell number (IAGP)

increased splenocyte number (IAGP)

increased susceptibility to Herpesvirales infection (IEA)

increased susceptibility to Picornaviridae infection (IAGP)

increased susceptibility to systemic lupus erythematosus (IAGP)

increased susceptibility to viral infection (IAGP)

no abnormal phenotype detected (IAGP)

premature death (IAGP)

renal glomerular immunoglobulin deposits (IAGP)

small thymus medulla (IAGP)

References

References - curated


1.	Li S, etal., JCI Insight. 2020 May 19. pii: 138070. doi: 10.1172/jci.insight.138070.
2.	MGD and Homologene mouse data transfer
3.	MGD data from the GO Consortium
4.	MGD IEA
5.	OMIM Disease Annotation Pipeline
6.	Pipeline to import KEGG annotations from KEGG into RGD
7.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8.	RGD automated import pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:75870	PMID:100557	PMID:1431091	PMID:1460424	PMID:1503636	PMID:1572667	PMID:1587551	PMID:1589800	PMID:1673361	PMID:1733847	PMID:1846950	PMID:1989904
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PMID:19095793	PMID:19104149	PMID:19109142	PMID:19109193	PMID:19151321	PMID:19158156	PMID:19164596	PMID:19188497	PMID:19221040	PMID:19338001	PMID:19349303	PMID:19414746
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PMID:29515042	PMID:29590614	PMID:29894691	PMID:30111869	PMID:30381460	PMID:30397035	PMID:30674678	PMID:30962403	PMID:31909831	PMID:31974171	PMID:32102875	PMID:32268087
PMID:32726802

Genomics

Comparative Map Data

Cd8a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	71,350,411 - 71,356,155 (+)	NCBI	GRCm39		mm39
GRCm38	6	71,373,427 - 71,379,171 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	71,373,427 - 71,379,173 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	71,323,421 - 71,329,165 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	71,302,936 - 71,308,680 (+)	NCBI			mm8
Celera	6	73,452,794 - 73,458,537 (+)	NCBI		Celera
Cytogenetic Map	6	C1	NCBI
cM Map	6	32.14	NCBI

CD8A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	86,784,610 - 86,808,396 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	86,784,605 - 86,808,396 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	87,011,728 - 87,035,519 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	86,865,239 - 86,871,638 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	86,923,391 - 86,929,725	NCBI
Celera	2	86,839,534 - 86,863,331 (-)	NCBI
Cytogenetic Map	2	p11.2	NCBI
HuRef	2	86,898,000 - 86,921,798 (-)	NCBI		HuRef
CHM1_1	2	86,941,749 - 86,965,554 (-)	NCBI		CHM1_1

Cd8a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	103,365,804 - 103,370,041 (+)	NCBI
Rnor_6.0 Ensembl	4	99,239,115 - 99,243,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	99,217,640 - 99,243,352 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	163,993,814 - 164,022,356 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	104,589,922 - 104,594,159 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	104,834,402 - 104,838,639 (+)	NCBI
Celera	4	92,538,482 - 92,542,731 (+)	NCBI		Celera
Cytogenetic Map	4	q31	NCBI

Cd8a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	952,502 - 978,636 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	952,595 - 979,159 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD8A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2A	88,376,411 - 88,383,519 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	88,377,722 - 88,382,635 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2A	86,832,559 - 86,855,772 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

CD8A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	17	38,369,414 - 38,400,508 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	17	38,396,022 - 38,400,508 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cd8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936712	885,301 - 891,247 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD8A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	57,998,891 - 58,037,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	57,999,228 - 58,029,768 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	60,852,723 - 60,859,977 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD8A
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	18,878,013 - 18,885,183 (+)	NCBI
ChlSab1.1 Ensembl	14	18,878,622 - 18,883,885 (+)	Ensembl

Cd8a
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	16,564,944 - 16,569,890 (+)	NCBI

Position Markers

BB154331

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	71,378,854 - 71,378,948	UniSTS	GRCm38
MGSCv37	6	71,328,848 - 71,328,942	UniSTS	GRCm37
Celera	6	73,458,220 - 73,458,314	UniSTS
Cytogenetic Map	6	C	UniSTS
cM Map	6	30.5	UniSTS
Whitehead/MRC_RH	6	715.05	UniSTS

Y00157

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	71,377,375 - 71,377,574	UniSTS	GRCm38
MGSCv37	6	71,327,369 - 71,327,568	UniSTS	GRCm37
Celera	6	73,456,741 - 73,456,940	UniSTS
Cytogenetic Map	6	C	UniSTS
cM Map	6	30.5	UniSTS
Whitehead/MRC_RH	6	717.39	UniSTS
Whitehead_YAC	6		UniSTS

PMC122808P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	71,373,760 - 71,373,994	UniSTS	GRCm38
MGSCv37	6	71,323,754 - 71,323,988	UniSTS	GRCm37
Celera	6	73,453,127 - 73,453,361	UniSTS
Cytogenetic Map	6	C	UniSTS
cM Map	6	30.5	UniSTS

Cd8a

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	71,374,771 - 71,374,871	UniSTS	GRCm38
MGSCv37	6	71,324,765 - 71,324,865	UniSTS	GRCm37
Celera	6	73,454,138 - 73,454,238	UniSTS
Cytogenetic Map	6	C	UniSTS
cM Map	6	30.5	UniSTS

Y00157

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	71,377,376 - 71,377,510	UniSTS	GRCm38
MGSCv37	6	71,327,370 - 71,327,504	UniSTS	GRCm37
Celera	6	73,456,742 - 73,456,876	UniSTS
Cytogenetic Map	6	C	UniSTS
Whitehead/MRC_RH	6	717.39	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80600000	Mouse
1357442	Dbts1_m	diabetes 1 (mouse)			Not determined		6	18234148	73387692	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	25000000	80000000	Mouse
4141782	Mrdq5_m	modifier of retinal degeneration QTL 5 (mouse)			Not determined			32850650	78238974	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1301326	Trbv4c2_m	T cell receptor beta variable 4 (mouse)			Not determined		6	40891296	71379171	Mouse
12880424	V25Dq4_m	vitamin D inactive form serum level QTL 4 (mouse)					6	41600000	75600000	Mouse
1301266	Lmr4_m	leishmaniasis resistance 4 (mouse)			Not determined		6	42116373	76116515	Mouse
11040600	Lmr4c_m	leishmaniasis resistance 4c (mouse)					6	42116373	76116515	Mouse
11040601	Lmr4a_m	leishmaniasis resistance 4a (mouse)					6	42116373	76116515	Mouse
11533915	Mts4_m	mammary tumor susceptibility 4 (mouse)					6	42116373	76116515	Mouse
12910785	Pwgrq16_m	post-weaning growth rate QTL 16 (mouse)					6	43826813	77811523	Mouse
12910798	Pwgrq5_m	pre-weaning growth rate QTL 5 (mouse)					6	43826813	77811523	Mouse
12910802	Pwbwq12_m	post-weaning body weight QTL 12 (mouse)					6	43826813	77811523	Mouse
12910807	Pwbwq11_m	post-weaning body weight QTL 11 (mouse)					6	43826813	77811523	Mouse
12910809	Pwbwq10_m	post-weaning body weight QTL 10 (mouse)					6	43826813	77811523	Mouse
12910820	Ogrq3_m	overall growth rate QTL 3 (mouse)					6	43826813	77811523	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
4140983	Srilp_m	sleep response to influenza, light phase (mouse)			Not determined			48726556	75447710	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1233
Count of miRNA genes:	436
Interacting mature miRNAs:	507
Transcripts:	ENSMUST00000066747, ENSMUST00000172321
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001081110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC160090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH002000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH002001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ131778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK017889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK037429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK037467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK137937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC030679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M12052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M12825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M16981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M22064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U34881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y00157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000066747 ⟹ ENSMUSP00000068123

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	71,373,427 - 71,379,169 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000172321 ⟹ ENSMUSP00000131873

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	71,373,553 - 71,379,173 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000205054

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	71,373,548 - 71,377,607 (+)	Ensembl

RefSeq Acc Id:

NM_001081110 ⟹ NP_001074579

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	71,350,411 - 71,356,155 (+)	NCBI
GRCm38	6	71,373,427 - 71,379,171 (+)	NCBI
MGSCv37	6	71,323,421 - 71,329,165 (+)	RGD
Celera	6	73,452,794 - 73,458,537 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GCTGGCTAAAGGAGCAGTTTCCCCGACCCTACACGCCTCCCCCACCGCACCTCCTCCGCCCTGT
TCCTGGGCCCCTCCCCTAGAGCCCTAGCTTGACCTAAGCTGCTTGCTGGTGGAGAGCACACCAT
GGCCTCACCGTTGACCCGCTTTCTGTCGCTGAACCTGCTGCTGCTGGGTGAGTCGATTATCCTG
GGGAGTGGAGAAGCTAAGCCACAGGCACCCGAACTCCGAATCTTTCCAAAGAAAATGGACGCCG
AACTTGGTCAGAAGGTGGACCTGGTATGTGAAGTGTTGGGGTCCGTTTCGCAAGGATGCTCTTG
GCTCTTCCAGAACTCCAGCTCCAAACTCCCCCAGCCCACCTTCGTTGTCTATATGGCTTCATCC
CACAACAAGATAACGTGGGACGAGAAGCTGAATTCGTCGAAACTGTTTTCTGCCATGAGGGACA
CGAATAATAAGTACGTTCTCACCCTGAACAAGTTCAGCAAGGAAAACGAAGGCTACTATTTCTG
CTCAGTCATCAGCAACTCGGTGATGTACTTCAGTTCTGTCGTGCCAGTCCTTCAGAAAGTGAAC
TCTACTACTACCAAGCCAGTGCTGCGAACTCCCTCACCTGTGCACCCTACCGGGACATCTCAGC
CCCAGAGACCAGAAGATTGTCGGCCCCGTGGCTCAGTGAAGGGGACCGGATTGGACTTCGCCTG
TGATATTTACATCTGGGCACCCTTGGCCGGAATCTGCGTGGCCCTTCTGCTGTCCTTGATCATC
ACTCTCATCTGCTACCACAGGAGCCGAAAGCGTGTTTGCAAATGTCCCAGGCCGCTAGTCAGAC
AGGAAGGCAAGCCCAGACCTTCAGAGAAAATTGTGTAAAATGGCACCGCCAGGAAGCTACAACT
ACTACATGACTTCAGAGATCTCTTCTTGCAAGAGGCCAGGCCCTCCTTTTTCAAGTTTCCTGCT
GTCTTATGTATTGCCCTCTGTATTGTTTTAGTAGGGGTGTGATGGGGACAGTTCCTTTTTCTTT
ATGAATTCTCTTTGACACAAAGCATACTTGTATGCATACAATGGGAGTAATGAGCAGACTGTAA
CACCAGAGCTAGTTCCAGTTTCGGGGTCCATGTCGCTGGTGGCCTCAGCACCCACTTGATATAA
ATCTCCTGTCTGCCCATCATATAGAAGAAGCTGAAGATCAGAGGTGGAAACAGCAGGATCTGTA
GACCCGGAGAGAACCCAAGCTAGAGGAACCCTCACTGACTGGTGCAGGGATCTCACCCCCATCC
CCTGAGCTCTCTGTTTAGGTATGTGTCTTTAGTATAGCATGCTTGTGCCTCAAACTGCAAGGAA
GCAAGTGGTATGAATCTGTGATCTGCTCAGCTCTGGCTGTGAGCATCAGATGTAACAAATCAAA
GTCAGGAGAACTGCCTTTAGCGGTGCACCTGGACATCAGAGCCCCTTGTAAGAACTGGGAAATT
GCTGGCAGTCTAGTGGAGCGGTACGGTAAATCTGGAAAACACTCCCCTCTGTCACTGAAGGCTG
TAGTAGAATCCAATTAAAGCTATTCAAACCACTGCCGCAGACCCTCTGGGTCCCTGTGTCTGCG
TGGAATGGGTCTCTCGAGCAGGTGGGCAAAGCGTAGGATTAAACTGACAAACAGATGCACACAG
GAGAGGCGTTGAATCTGAATGTAATGTCAGGTCGAACCTCGGACTTTTTATAATACAGAAAAAA
TTCCAGGGGCGATATGTCACACCAGACAAGGTACACTGAAATTTACCAGATACAAGAGAATGAC
TTCGAAAGGAATTTGCAGGAACTAGATAAATGTTTACAATAGAGATTATCAGCCCTGCCTAGGA
TCATCAGCCTAGTGCCAGGTAAGAATTTCACACTTTAGTGTTAAAAGCACCAGGGGGTAATTAC
TCTTGGCAGGCCTCAAGAATAATGTAGTGTCACGGACCCCTAAATTCCTAGGCCTTGTTAAATC
TTATCTTGTCTGGAGAATCCCCATTTATCAGGAGAGTATCTCAACTTGCTCTTGGCATGGAATG
TAGCCTGTACTAAAGATTTTTATCTCAGTGAGATTCCCAGGCTCTTTCTGCAGACCAGATGAGC
TAATGGCCTTGTTTATTGTAATGCTTAATTAGTTACTGAATAGGTTAAACTCCTTGCTGTTATC
TGGGATCTTGGAACAATGGGGGCGCTGGGGGGGGGGGCGGGGGGGCTTTAGCTATGTCAGAATT
CAATCTTAAAAGGCACTTACAATAGGGTAATGCTTAATAGAGGGCACATGGATCCATACACTAG
ACTAACGCGGGAGTGGAAAATTAATTTATGGTTTAGAGGGAACGCCAGACTCCAGGAGGGAATT
TCTGTGAAACTCTTTTCCTTGTGGGCAGCTTCCAAGCTTCCGCTTGTCAAACTGACCCAACTGG
AGAGCGTGGCTTTCACCAGACTCCAGGAGGGAGCTTTCGTGAAACTCTTCCTCATGAGATAGCT
TCCAAGCTTTCGCCTGTCAAGCTGACTCCACCAGAGTGCGTGGCAAACCACCACTGTGAAATTC
CTGTAGAATTATGATTCTCTCTGCTCTTGGACAGCAGAGGGTGAGGTTTGACAGATACGACTCA
GGCATCAGAGAAGCTGCAGGCAGGCCCTCTCCCATGTCTAAACATGAGACTTGGATGTGCTCCT
GGGATCACCAGCATGCTTTATACTCTATAAACATAGAATCCTTGGAGAACATTCCTTAGCACCC
CCGGAAGGCAGATGTAAAGAGGCAGACTAGACGTGGAGGAAGACGCTGACTGTCAAAACTGCTG
CCCCAGAGCTAATTTCCTCTCACAGTACCATATAAGTAACAAATAATAGGCAATAAAAACCTGA
AGGAACTAAGAGTCACCCATGGTCCTCTATCTATTGTTACTATCATTTTATACCTGATTATTTC
CTATGCATATATATGTAAGAAAGATTACACCCTGGGTTTTAAAACACAACAGTTTTTGTAAGCA
GATTTAGTAAATAAACATGTATATTATCATTTAATGGTTAAATAGCATTTCATAGTTTGGTTGT
ATCCATTTAGTATTAAATTGTTTCAAACTTCCCCCTACTATTACACTACTAAACTTGC

hide sequence

RefSeq Acc Id:

NM_009857 ⟹ NP_033987

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	71,350,411 - 71,356,155 (+)	NCBI
GRCm38	6	71,373,427 - 71,379,171 (+)	NCBI
MGSCv37	6	71,323,421 - 71,329,165 (+)	RGD
Celera	6	73,452,794 - 73,458,537 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GCTGGCTAAAGGAGCAGTTTCCCCGACCCTACACGCCTCCCCCACCGCACCTCCTCCGCCCTGT
TCCTGGGCCCCTCCCCTAGAGCCCTAGCTTGACCTAAGCTGCTTGCTGGTGGAGAGCACACCAT
GGCCTCACCGTTGACCCGCTTTCTGTCGCTGAACCTGCTGCTGCTGGGTGAGTCGATTATCCTG
GGGAGTGGAGAAGCTAAGCCACAGGCACCCGAACTCCGAATCTTTCCAAAGAAAATGGACGCCG
AACTTGGTCAGAAGGTGGACCTGGTATGTGAAGTGTTGGGGTCCGTTTCGCAAGGATGCTCTTG
GCTCTTCCAGAACTCCAGCTCCAAACTCCCCCAGCCCACCTTCGTTGTCTATATGGCTTCATCC
CACAACAAGATAACGTGGGACGAGAAGCTGAATTCGTCGAAACTGTTTTCTGCCATGAGGGACA
CGAATAATAAGTACGTTCTCACCCTGAACAAGTTCAGCAAGGAAAACGAAGGCTACTATTTCTG
CTCAGTCATCAGCAACTCGGTGATGTACTTCAGTTCTGTCGTGCCAGTCCTTCAGAAAGTGAAC
TCTACTACTACCAAGCCAGTGCTGCGAACTCCCTCACCTGTGCACCCTACCGGGACATCTCAGC
CCCAGAGACCAGAAGATTGTCGGCCCCGTGGCTCAGTGAAGGGGACCGGATTGGACTTCGCCTG
TGATATTTACATCTGGGCACCCTTGGCCGGAATCTGCGTGGCCCTTCTGCTGTCCTTGATCATC
ACTCTCATCTGCTACCACAGCCGCTAGTCAGACAGGAAGGCAAGCCCAGACCTTCAGAGAAAAT
TGTGTAAAATGGCACCGCCAGGAAGCTACAACTACTACATGACTTCAGAGATCTCTTCTTGCAA
GAGGCCAGGCCCTCCTTTTTCAAGTTTCCTGCTGTCTTATGTATTGCCCTCTGTATTGTTTTAG
TAGGGGTGTGATGGGGACAGTTCCTTTTTCTTTATGAATTCTCTTTGACACAAAGCATACTTGT
ATGCATACAATGGGAGTAATGAGCAGACTGTAACACCAGAGCTAGTTCCAGTTTCGGGGTCCAT
GTCGCTGGTGGCCTCAGCACCCACTTGATATAAATCTCCTGTCTGCCCATCATATAGAAGAAGC
TGAAGATCAGAGGTGGAAACAGCAGGATCTGTAGACCCGGAGAGAACCCAAGCTAGAGGAACCC
TCACTGACTGGTGCAGGGATCTCACCCCCATCCCCTGAGCTCTCTGTTTAGGTATGTGTCTTTA
GTATAGCATGCTTGTGCCTCAAACTGCAAGGAAGCAAGTGGTATGAATCTGTGATCTGCTCAGC
TCTGGCTGTGAGCATCAGATGTAACAAATCAAAGTCAGGAGAACTGCCTTTAGCGGTGCACCTG
GACATCAGAGCCCCTTGTAAGAACTGGGAAATTGCTGGCAGTCTAGTGGAGCGGTACGGTAAAT
CTGGAAAACACTCCCCTCTGTCACTGAAGGCTGTAGTAGAATCCAATTAAAGCTATTCAAACCA
CTGCCGCAGACCCTCTGGGTCCCTGTGTCTGCGTGGAATGGGTCTCTCGAGCAGGTGGGCAAAG
CGTAGGATTAAACTGACAAACAGATGCACACAGGAGAGGCGTTGAATCTGAATGTAATGTCAGG
TCGAACCTCGGACTTTTTATAATACAGAAAAAATTCCAGGGGCGATATGTCACACCAGACAAGG
TACACTGAAATTTACCAGATACAAGAGAATGACTTCGAAAGGAATTTGCAGGAACTAGATAAAT
GTTTACAATAGAGATTATCAGCCCTGCCTAGGATCATCAGCCTAGTGCCAGGTAAGAATTTCAC
ACTTTAGTGTTAAAAGCACCAGGGGGTAATTACTCTTGGCAGGCCTCAAGAATAATGTAGTGTC
ACGGACCCCTAAATTCCTAGGCCTTGTTAAATCTTATCTTGTCTGGAGAATCCCCATTTATCAG
GAGAGTATCTCAACTTGCTCTTGGCATGGAATGTAGCCTGTACTAAAGATTTTTATCTCAGTGA
GATTCCCAGGCTCTTTCTGCAGACCAGATGAGCTAATGGCCTTGTTTATTGTAATGCTTAATTA
GTTACTGAATAGGTTAAACTCCTTGCTGTTATCTGGGATCTTGGAACAATGGGGGCGCTGGGGG
GGGGGGCGGGGGGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTACAATAGGGTAAT
GCTTAATAGAGGGCACATGGATCCATACACTAGACTAACGCGGGAGTGGAAAATTAATTTATGG
TTTAGAGGGAACGCCAGACTCCAGGAGGGAATTTCTGTGAAACTCTTTTCCTTGTGGGCAGCTT
CCAAGCTTCCGCTTGTCAAACTGACCCAACTGGAGAGCGTGGCTTTCACCAGACTCCAGGAGGG
AGCTTTCGTGAAACTCTTCCTCATGAGATAGCTTCCAAGCTTTCGCCTGTCAAGCTGACTCCAC
CAGAGTGCGTGGCAAACCACCACTGTGAAATTCCTGTAGAATTATGATTCTCTCTGCTCTTGGA
CAGCAGAGGGTGAGGTTTGACAGATACGACTCAGGCATCAGAGAAGCTGCAGGCAGGCCCTCTC
CCATGTCTAAACATGAGACTTGGATGTGCTCCTGGGATCACCAGCATGCTTTATACTCTATAAA
CATAGAATCCTTGGAGAACATTCCTTAGCACCCCCGGAAGGCAGATGTAAAGAGGCAGACTAGA
CGTGGAGGAAGACGCTGACTGTCAAAACTGCTGCCCCAGAGCTAATTTCCTCTCACAGTACCAT
ATAAGTAACAAATAATAGGCAATAAAAACCTGAAGGAACTAAGAGTCACCCATGGTCCTCTATC
TATTGTTACTATCATTTTATACCTGATTATTTCCTATGCATATATATGTAAGAAAGATTACACC
CTGGGTTTTAAAACACAACAGTTTTTGTAAGCAGATTTAGTAAATAAACATGTATATTATCATT
TAATGGTTAAATAGCATTTCATAGTTTGGTTGTATCCATTTAGTATTAAATTGTTTCAAACTTC
CCCCTACTATTACACTACTAAACTTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001074579	(Get FASTA)	NCBI Sequence Viewer
	NP_033987	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA39474	(Get FASTA)	NCBI Sequence Viewer
	AAA39475	(Get FASTA)	NCBI Sequence Viewer
	AAA39476	(Get FASTA)	NCBI Sequence Viewer
	AAA39477	(Get FASTA)	NCBI Sequence Viewer
	AAA39478	(Get FASTA)	NCBI Sequence Viewer
	AAA39665	(Get FASTA)	NCBI Sequence Viewer
	AAA92533	(Get FASTA)	NCBI Sequence Viewer
	AAH30679	(Get FASTA)	NCBI Sequence Viewer
	BAC29812	(Get FASTA)	NCBI Sequence Viewer
	BAC40163	(Get FASTA)	NCBI Sequence Viewer
	BAC40215	(Get FASTA)	NCBI Sequence Viewer
	BAC40342	(Get FASTA)	NCBI Sequence Viewer
	BAE23516	(Get FASTA)	NCBI Sequence Viewer
	CAA68352	(Get FASTA)	NCBI Sequence Viewer
	EDK98938	(Get FASTA)	NCBI Sequence Viewer
	EDK98939	(Get FASTA)	NCBI Sequence Viewer
	P01731	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001074579 ⟸ NM_001081110
- Peptide Label:	isoform 1 precursor
- UniProtKB:	P01731 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCS WLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYF CSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFA CDIYIWAPLAGICVALLLSLIITLICYHRSRKRVCKCPRPLVRQEGKPRPSEKIV hide sequence

RefSeq Acc Id:	NP_033987 ⟸ NM_009857
- Peptide Label:	isoform 2 precursor
- UniProtKB:	Q8CAX3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPLTRFLSLNLLLLGESIILGSGEAKPQAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCS WLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYF CSVISNSVMYFSSVVPVLQKVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRPRGSVKGTGLDFA CDIYIWAPLAGICVALLLSLIITLICYHSR hide sequence

RefSeq Acc Id:

ENSMUSP00000068123 ⟸ ENSMUST00000066747

RefSeq Acc Id:

ENSMUSP00000131873 ⟸ ENSMUST00000172321

Protein Domains

Ig-like Ig-like V-type

Promoters

RGD ID:

6850396

Promoter ID:

EP17097

Type:

single initiation site

Name:

MM_CD8A

Description:

T-cell differentiation antigen, CD8A or LYT2 Oor LYT-2 gene.

SO ACC ID:

SO:0000170

Source:

EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Nuclease protection with homologous sequence ladder

Regulation:

immature, cytotoxic, suppressor T (repressed by or weakly expressed in) cells

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv37	6	71,323,214 - 71,323,274	EPD
MGSCv36	6	71,323,214 - 71,323,274	EPD

RGD ID:

6889962

Promoter ID:

EPDNEW_M8432

Type:

preliminary

Name:

Cd8a_2

Description:

Mus musculus CD8 antigen, alpha chain , transcript variant 2,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8433

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	71,373,220 - 71,373,280	EPDNEW

RGD ID:

6889964

Promoter ID:

EPDNEW_M8433

Type:

initiation region

Name:

Cd8a_1

Description:

Mus musculus CD8 antigen, alpha chain , transcript variant 2,mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M8432

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	71,373,548 - 71,373,608	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:88346	AgrOrtholog
Ensembl Genes	ENSMUSG00000053977	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000068123	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000131873	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000066747	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000172321	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	CD8_asu	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:12525	UniProtKB/Swiss-Prot
MGD	MGI:88346	ENTREZGENE
NCBI Gene	12525	ENTREZGENE
PANTHER	PTHR10441	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cd8a	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	IGv	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00409	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	CD8A_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3UUV7_MOUSE	UniProtKB/TrEMBL
	Q542K6_MOUSE	UniProtKB/TrEMBL
	Q60965_MOUSE	UniProtKB/TrEMBL
	Q8C2L1_MOUSE	UniProtKB/TrEMBL
	Q8C2Q0_MOUSE	UniProtKB/TrEMBL
	Q8CAX3	ENTREZGENE, UniProtKB/TrEMBL
	Q8K2M2_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)