Smarce1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1) - Rat Genome Database

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Pathways
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Gene: Smarce1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1) Mus musculus
Analyze
Symbol: Smarce1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
RGD ID: 1313744
MGI Page MGI
Description: Enables RNA binding activity. Acts upstream of or within neurogenesis. Part of SWI/SNF complex; nBAF complex; and npBAF complex. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 5; familial meningioma; and meningioma. Orthologous to human SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810417B20Rik; 5830412H02Rik; 9030408N19Rik; Baf27; BAF5; BAF57; BRG1-associated factor 57; SWI/SNF-related matrix-associated actin-dependent regulator chromatin subfamily E member 1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm11864   Gm19231   Gm4811   Gm6411   Gm8494   Smarce1-ps1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,099,873 - 99,121,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,099,873 - 99,121,843 (-)EnsemblGRCm39 Ensembl
GRCm381199,209,047 - 99,231,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,209,047 - 99,231,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,070,361 - 99,092,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,025,137 - 99,047,107 (-)NCBIMGSCv36mm8
Celera11108,876,605 - 108,898,195 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
bBAF complex  (NAS)
brahma complex  (NAS)
chromatin  (NAS)
kinetochore  (NAS)
nBAF complex  (IDA,NAS)
npBAF complex  (IDA,NAS)
nuclear matrix  (NAS)
nucleoplasm  (ISO)
nucleus  (ISO)
RSC-type complex  (NAS)
SWI/SNF complex  (IBA,IDA,ISO,NAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Targeted next-generation sequencing for differential diagnosis of neurofibromatosis type 2, schwannomatosis, and meningiomatosis. Louvrier C, etal., Neuro Oncol. 2018 Jun 18;20(7):917-929. doi: 10.1093/neuonc/noy009.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The spectrum of SWI/SNF mutations, ubiquitous in human cancers. Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.
Additional References at PubMed
PMID:8804307   PMID:9128241   PMID:9435219   PMID:10078207   PMID:10349636   PMID:10778858   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11078522   PMID:11175787   PMID:11263494  
PMID:11790558   PMID:12110891   PMID:12145209   PMID:12192000   PMID:12215535   PMID:12368262   PMID:12477932   PMID:12520002   PMID:12637547   PMID:12904583   PMID:14610273   PMID:14691545  
PMID:15489334   PMID:15743818   PMID:15782199   PMID:15985610   PMID:16141072   PMID:16141073   PMID:16287714   PMID:16602821   PMID:16932743   PMID:17340523   PMID:17640523   PMID:17920018  
PMID:17967808   PMID:18023262   PMID:18287559   PMID:18799693   PMID:18809673   PMID:18986647   PMID:19180471   PMID:19279220   PMID:19345177   PMID:19741146   PMID:19781646   PMID:20059953  
PMID:20211142   PMID:20362541   PMID:20412781   PMID:21076395   PMID:21118511   PMID:21267068   PMID:21368052   PMID:21543328   PMID:21873635   PMID:21936910   PMID:22083510   PMID:22174793  
PMID:22215678   PMID:22325351   PMID:22922362   PMID:22988430   PMID:23198860   PMID:23375831   PMID:23643363   PMID:23698369   PMID:24146773   PMID:24335282   PMID:24952961   PMID:25066234  
PMID:26655900   PMID:27149204   PMID:27746211   PMID:29978433   PMID:30457570   PMID:30550785   PMID:31077711   PMID:31162944   PMID:31186351   PMID:32504627   PMID:34321999   PMID:35020876  
PMID:37805104  


Genomics

Comparative Map Data
Smarce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,099,873 - 99,121,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,099,873 - 99,121,843 (-)EnsemblGRCm39 Ensembl
GRCm381199,209,047 - 99,231,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,209,047 - 99,231,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,070,361 - 99,092,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,025,137 - 99,047,107 (-)NCBIMGSCv36mm8
Celera11108,876,605 - 108,898,195 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
SMARCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,624,962 - 40,647,818 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,624,962 - 40,648,654 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,781,214 - 38,804,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,037,498 - 36,057,629 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,037,505 - 36,057,629NCBI
Celera1735,445,555 - 35,465,686 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,578,544 - 34,598,673 (-)NCBIHuRef
CHM1_11739,019,316 - 39,039,446 (-)NCBICHM1_1
T2T-CHM13v2.01741,489,340 - 41,512,196 (-)NCBIT2T-CHM13v2.0
Smarce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,655,468 - 84,678,259 (-)NCBIGRCr8
mRatBN7.21084,159,270 - 84,180,547 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,159,275 - 84,179,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1089,103,140 - 89,123,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,601,260 - 88,621,968 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,993,326 - 84,013,905 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01087,116,827 - 87,138,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,116,827 - 87,137,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,912,863 - 86,934,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41088,104,643 - 88,127,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11927,930,282 - 27,931,646 (-)NCBI
Celera1082,899,032 - 82,919,746 (-)NCBICelera
Cytogenetic Map10q31NCBI
Smarce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,129,132 - 15,147,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,129,619 - 15,147,487 (-)NCBIChiLan1.0ChiLan1.0
SMARCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,301,208 - 24,322,471 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,192,677 - 26,217,200 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,633,982 - 16,660,502 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,860,098 - 16,884,946 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,860,400 - 16,884,946 (+)Ensemblpanpan1.1panPan2
SMARCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,015,402 - 22,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,015,600 - 22,035,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,488,381 - 21,509,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,808,541 - 22,829,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,808,728 - 22,829,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,582,974 - 21,603,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,841,783 - 21,862,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,966,284 - 21,987,292 (+)NCBIUU_Cfam_GSD_1.0
Smarce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,415,651 - 21,435,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,638,526 - 15,659,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,638,546 - 15,659,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,786,897 - 21,807,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,784,410 - 21,807,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,164,830 - 22,178,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,539,138 - 65,559,810 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,541,513 - 65,561,401 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,419,335 - 36,441,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarce1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,714,525 - 2,729,961 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,712,524 - 2,730,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smarce1
878 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:774
Count of miRNA genes:473
Interacting mature miRNAs:539
Transcripts:ENSMUST00000103133, ENSMUST00000128215, ENSMUST00000128707, ENSMUST00000135040, ENSMUST00000155062, ENSMUST00000156160
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119689769399327028Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse

Markers in Region
Smarce1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381199,209,439 - 99,209,494UniSTSGRCm38
MGSCv371199,070,753 - 99,070,808UniSTSGRCm37
Celera11108,876,997 - 108,877,052UniSTS
Cytogenetic Map11DUniSTS
cM Map11 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_020618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF035263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL590991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN710586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU327022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU327023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU327024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU327025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU327026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000103133   ⟹   ENSMUSP00000099422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,099,873 - 99,121,843 (-)Ensembl
GRCm38.p6 Ensembl1199,209,047 - 99,231,017 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,116,125 - 99,121,272 (-)Ensembl
GRCm38.p6 Ensembl1199,225,299 - 99,230,446 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,110,535 - 99,121,239 (-)Ensembl
GRCm38.p6 Ensembl1199,219,709 - 99,230,413 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135040
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,110,455 - 99,121,271 (-)Ensembl
GRCm38.p6 Ensembl1199,219,629 - 99,230,445 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,110,046 - 99,111,657 (-)Ensembl
GRCm38.p6 Ensembl1199,219,220 - 99,220,831 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,100,818 - 99,104,269 (-)Ensembl
GRCm38.p6 Ensembl1199,209,992 - 99,213,443 (-)Ensembl
RefSeq Acc Id: NM_020618   ⟹   NP_065643
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391199,099,873 - 99,121,843 (-)NCBI
GRCm381199,209,047 - 99,231,017 (-)NCBI
MGSCv371199,070,361 - 99,092,331 (-)RGD
Celera11108,876,605 - 108,898,195 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_065643   ⟸   NM_020618
- UniProtKB: Q8BPD9 (UniProtKB/Swiss-Prot),   O54941 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000099422   ⟸   ENSMUST00000103133
Protein Domains
HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54941-F1-model_v2 AlphaFold O54941 1-411 view protein structure

Promoters
RGD ID:6822168
Promoter ID:MM_KWN:9650
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000014750,   OTTMUST00000014751,   OTTMUST00000014753,   UC007LIJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361199,091,756 - 99,092,257 (-)MPROMDB
RGD ID:8676552
Promoter ID:EPDNEW_M16306
Type:multiple initiation site
Name:Smarce1_1
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily e, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16307  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381199,230,446 - 99,230,506EPDNEW
RGD ID:8676554
Promoter ID:EPDNEW_M16307
Type:initiation region
Name:Smarce1_2
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily e, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16306  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381199,230,929 - 99,230,989EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1927347 AgrOrtholog
Ensembl Genes ENSMUSG00000037935 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000103133 ENTREZGENE
  ENSMUST00000103133.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57376 UniProtKB/Swiss-Prot
MGD MGI:1927347 ENTREZGENE
NCBI Gene 57376 ENTREZGENE
PANTHER PTHR46232 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY E MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Smarce1 PhenoGen
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HMG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C0IMW9_MOUSE UniProtKB/TrEMBL
  C0IMX0_MOUSE UniProtKB/TrEMBL
  C0IMX1_MOUSE UniProtKB/TrEMBL
  C0IMX3_MOUSE UniProtKB/TrEMBL
  O54941 ENTREZGENE
  Q8BPD9 ENTREZGENE
  SMCE1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BPD9 UniProtKB/Swiss-Prot