Smarcb1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1) - Rat Genome Database

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Gene: Smarcb1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1) Mus musculus
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Symbol: Smarcb1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
RGD ID: 1318722
MGI Page MGI
Description: Predicted to enable several functions, including Tat protein binding activity; identical protein binding activity; and p53 binding activity. Predicted to contribute to RNA polymerase I core promoter sequence-specific DNA binding activity. Acts upstream of or within blastocyst hatching; cell differentiation; and negative regulation of cell population proliferation. Located in XY body and nucleus. Part of SWI/SNF complex; nBAF complex; and npBAF complex. Is expressed in several structures, including branchial arch; central nervous system; genitourinary system; limb primordium; and sensory organ. Used to study atypical teratoid rhabdoid tumor. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 3; atypical teratoid rhabdoid tumor; neurilemmomatosis; and rhabdoid cancer. Orthologous to human SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AU020204; Baf4; Baf47; BRG1-associated factor 47; I; Ini1; integrase interactor 1 protein; MGC132387; mSNF5; Sn; Snf5; SNF5 homolog; SNF5/INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,732,603 - 75,757,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl1075,732,603 - 75,757,451 (-)Ensembl
GRCm381075,896,769 - 75,921,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,896,769 - 75,921,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,359,514 - 75,384,359 (-)NCBIGRCm37mm9NCBIm37
MGSCv361075,340,491 - 75,365,304 (-)NCBImm8
Celera1076,941,458 - 76,966,299 (-)NCBICelera
Cytogenetic Map10C1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood cell morphology/development  (IAGP)
abnormal bone marrow cell morphology/development  (IAGP)
abnormal brain white matter morphology  (IAGP)
abnormal cerebellar granule cell migration  (IAGP)
abnormal cerebellar layer morphology  (IAGP)
abnormal cerebellar Purkinje cell layer  (IAGP)
abnormal cerebellum external granule cell layer morphology  (IAGP)
abnormal cerebellum morphology  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal coat appearance  (IEA)
abnormal corpus callosum morphology  (IAGP)
abnormal eye development  (IAGP)
abnormal gait  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal hippocampus morphology  (IAGP)
abnormal inner cell mass apoptosis  (IAGP)
abnormal limb posture  (IAGP)
abnormal liver morphology  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal lymph node morphology  (IAGP)
abnormal nervous system development  (IAGP)
abnormal skin coloration  (IEA)
abnormal spleen morphology  (IAGP)
abnormal stride length  (IAGP)
absent inner cell mass proliferation  (IAGP)
absent trophectoderm cell proliferation  (IAGP)
ataxia  (IAGP)
axon degeneration  (IAGP)
bruising  (IAGP)
circling  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased glycogen catabolism rate  (IAGP)
decreased litter size  (IAGP)
decreased liver glycogen level  (IAGP)
decreased oligodendrocyte number  (IAGP)
decreased prepulse inhibition  (IEA)
decreased survivor rate  (IAGP)
decreased tumor incidence  (IAGP)
demyelination  (IAGP)
dissociated hepatocytes  (IAGP)
dystonia  (IAGP)
embryonic lethality  (IAGP)
embryonic lethality at implantation, complete penetrance  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality prior to organogenesis  (IEA)
enlarged liver  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
excessive scratching  (IAGP)
failure of blastocyst to hatch from the zona pellucida  (IAGP)
failure of embryo implantation  (IAGP)
gliosis  (IAGP)
hindlimb paralysis  (IAGP)
hypoglycemia  (IAGP)
impaired coordination  (IAGP)
impaired gluconeogenesis  (IAGP)
increased apoptosis  (IAGP)
increased blastoma incidence  (IAGP)
increased brain tumor incidence  (IAGP)
increased carcinoma incidence  (IAGP)
increased eosinophil cell number  (IAGP)
increased facial tumor incidence  (IAGP)
increased hepatocyte proliferation  (IAGP)
increased lymphoma incidence  (IAGP)
increased malignant tumor incidence  (IAGP)
increased rhabdomyoma incidence  (IAGP)
increased sarcoma incidence  (IAGP)
increased T cell derived lymphoma incidence  (IAGP)
increased trophectoderm apoptosis  (IAGP)
increased tumor incidence  (IAGP)
intestinal hemorrhage  (IAGP)
lethargy  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
pancytopenia  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
seizures  (IAGP)
thin cerebral cortex  (IAGP)
tremors  (IAGP)
References

Additional References at PubMed
PMID:8889548   PMID:8895581   PMID:10208879   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11053448   PMID:11076861   PMID:11095756   PMID:11263494   PMID:11313485   PMID:12368262  
PMID:12450796   PMID:12477932   PMID:12520002   PMID:12637547   PMID:14610273   PMID:14630919   PMID:15489334   PMID:15696166   PMID:15721633   PMID:15782199   PMID:16099835   PMID:16138077  
PMID:16141072   PMID:16141073   PMID:16287714   PMID:16301525   PMID:16424906   PMID:16537910   PMID:16602821   PMID:16787967   PMID:16912184   PMID:16919471   PMID:16959763   PMID:17255092  
PMID:17409406   PMID:17640523   PMID:18287559   PMID:18710953   PMID:18799693   PMID:19279220   PMID:19676100   PMID:19789351   PMID:20059953   PMID:20096683   PMID:20362541   PMID:20412781  
PMID:20473326   PMID:20951942   PMID:21076395   PMID:21173237   PMID:21267068   PMID:21873635   PMID:22083510   PMID:22285184   PMID:22325351   PMID:22496869   PMID:23129809   PMID:23197309  
PMID:23723349   PMID:23851500   PMID:24335282   PMID:25274825   PMID:26363008   PMID:26370283   PMID:26655900   PMID:26818002   PMID:26986003   PMID:28178232   PMID:28262751   PMID:28369036  
PMID:28824165   PMID:29684361   PMID:30753823   PMID:31273213   PMID:31543342   PMID:31708437   PMID:32504627   PMID:32640256   PMID:33712604   PMID:34078620   PMID:34912016  


Genomics

Comparative Map Data
Smarcb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391075,732,603 - 75,757,448 (-)NCBIGRCm39mm39
GRCm39 Ensembl1075,732,603 - 75,757,451 (-)Ensembl
GRCm381075,896,769 - 75,921,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1075,896,769 - 75,921,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv371075,359,514 - 75,384,359 (-)NCBIGRCm37mm9NCBIm37
MGSCv361075,340,491 - 75,365,304 (-)NCBImm8
Celera1076,941,458 - 76,966,299 (-)NCBICelera
Cytogenetic Map10C1NCBI
SMARCB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2223,786,931 - 23,838,009 (+)EnsemblGRCh38hg38GRCh38
GRCh382223,786,966 - 23,838,009 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372224,129,153 - 24,180,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362222,459,150 - 22,506,705 (+)NCBINCBI36hg18NCBI36
Build 342222,453,703 - 22,501,258NCBI
Celera227,968,247 - 8,015,764 (+)NCBI
Cytogenetic Map22q11.23NCBI
HuRef227,117,207 - 7,164,626 (+)NCBIHuRef
CHM1_12224,141,393 - 24,188,920 (+)NCBICHM1_1
Smarcb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22012,741,164 - 12,763,616 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2012,741,477 - 12,763,620 (+)Ensembl
Rnor_6.02013,679,955 - 13,702,821 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,680,716 - 13,704,931 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,836,242 - 15,858,384 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42013,140,331 - 13,162,437 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12013,140,557 - 13,162,664 (+)NCBI
Celera2014,232,795 - 14,254,901 (+)NCBICelera
Cytogenetic Map20p12NCBI
Smarcb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554558,415,839 - 8,457,097 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554558,420,263 - 8,457,105 (-)NCBIChiLan1.0ChiLan1.0
SMARCB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12222,627,950 - 22,673,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2222,627,982 - 22,673,921 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0224,542,764 - 4,589,461 (+)NCBIMhudiblu_PPA_v0panPan3
SMARCB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12628,692,610 - 28,728,778 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2628,692,899 - 28,728,783 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2627,765,925 - 27,802,103 (-)NCBI
ROS_Cfam_1.02630,097,586 - 30,133,966 (-)NCBI
ROS_Cfam_1.0 Ensembl2630,097,586 - 30,134,047 (-)Ensembl
UMICH_Zoey_3.12628,178,905 - 28,215,089 (-)NCBI
UNSW_CanFamBas_1.02627,796,839 - 27,833,022 (-)NCBI
UU_Cfam_GSD_1.02628,784,702 - 28,820,890 (-)NCBI
Smarcb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118141,445,150 - 141,477,819 (+)NCBI
SpeTri2.0NW_0049366191,276,239 - 1,308,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1449,874,984 - 49,906,048 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11449,874,981 - 49,906,043 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21453,317,251 - 53,348,336 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1196,902,985 - 6,945,111 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl196,902,951 - 6,944,784 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666100428,050 - 470,045 (-)NCBIVero_WHO_p1.0
Smarcb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474710,362,149 - 10,396,580 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH136377  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,897,015 - 75,897,562UniSTSGRCm38
MGSCv371075,359,760 - 75,360,307UniSTSGRCm37
Celera1076,941,704 - 76,942,251UniSTS
Cytogenetic Map10C1UniSTS
D10Jhu68  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,909,485 - 75,909,691UniSTSGRCm38
MGSCv371075,372,230 - 75,372,436UniSTSGRCm37
Celera1076,954,174 - 76,954,380UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.9UniSTS
UniSTS:236394  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,900,767 - 75,901,124UniSTSGRCm38
MGSCv371075,363,512 - 75,363,869UniSTSGRCm37
Celera1076,945,456 - 76,945,813UniSTS
Cytogenetic Map10C1UniSTS
UniSTS:224663  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,923,408 - 75,923,602UniSTSGRCm38
MGSCv371075,386,153 - 75,386,347UniSTSGRCm37
Celera1076,968,093 - 76,968,287UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.9UniSTS
AA892528  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381075,923,373 - 75,923,604UniSTSGRCm38
MGSCv371075,386,118 - 75,386,349UniSTSGRCm37
Celera1076,968,058 - 76,968,289UniSTS
Cytogenetic Map10C1UniSTS
cM Map1040.9UniSTS
Smarcb1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7415138482655287Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1113
Count of miRNA genes:485
Interacting mature miRNAs:579
Transcripts:ENSMUST00000000925, ENSMUST00000121304, ENSMUST00000133189, ENSMUST00000140388, ENSMUST00000140408, ENSMUST00000146555
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB017343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB017344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB041578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI840539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ011740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000925   ⟹   ENSMUSP00000000925
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,732,603 - 75,757,451 (-)Ensembl
GRCm38.p6 Ensembl1075,896,769 - 75,921,617 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121304   ⟹   ENSMUSP00000112463
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,732,611 - 75,757,448 (-)Ensembl
GRCm38.p6 Ensembl1075,896,777 - 75,921,614 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,732,607 - 75,749,996 (-)Ensembl
GRCm38.p6 Ensembl1075,896,773 - 75,914,162 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140388   ⟹   ENSMUSP00000123093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,733,362 - 75,757,423 (-)Ensembl
GRCm38.p6 Ensembl1075,897,528 - 75,921,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140408
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,732,609 - 75,752,406 (-)Ensembl
GRCm38.p6 Ensembl1075,896,775 - 75,916,572 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146555   ⟹   ENSMUSP00000115388
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1075,746,098 - 75,750,998 (-)Ensembl
GRCm38.p6 Ensembl1075,910,264 - 75,915,164 (-)Ensembl
RefSeq Acc Id: NM_001161853   ⟹   NP_001155325
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,732,603 - 75,757,448 (-)NCBI
GRCm381075,896,769 - 75,921,614 (-)ENTREZGENE
MGSCv371075,359,514 - 75,384,359 (-)RGD
Celera1076,941,458 - 76,966,299 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_011418   ⟹   NP_035548
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391075,732,603 - 75,757,448 (-)NCBI
GRCm381075,896,769 - 75,921,614 (-)ENTREZGENE
MGSCv371075,359,514 - 75,384,359 (-)RGD
Celera1076,941,458 - 76,966,299 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035548   ⟸   NM_011418
- Peptide Label: isoform 1
- UniProtKB: Q9Z0H3 (UniProtKB/Swiss-Prot),   Q3UDA4 (UniProtKB/TrEMBL),   Q6ZWP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155325   ⟸   NM_001161853
- Peptide Label: isoform 2
- UniProtKB: Q3UDA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000000925   ⟸   ENSMUST00000000925
RefSeq Acc Id: ENSMUSP00000115388   ⟸   ENSMUST00000146555
RefSeq Acc Id: ENSMUSP00000112463   ⟸   ENSMUST00000121304
RefSeq Acc Id: ENSMUSP00000123093   ⟸   ENSMUST00000140388

Promoters
RGD ID:6819944
Promoter ID:MM_KWN:4598
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000078974,   OTTMUST00000078975,   OTTMUST00000078977
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,374,321 - 75,379,277 (-)MPROMDB
RGD ID:6819946
Promoter ID:MM_KWN:4599
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001161853,   OTTMUST00000078972,   OTTMUST00000078976
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,383,896 - 75,384,912 (-)MPROMDB
RGD ID:8672346
Promoter ID:EPDNEW_M14203
Type:single initiation site
Name:Smarcb1_2
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily b, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14204  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381075,920,204 - 75,920,264EPDNEW
RGD ID:8672348
Promoter ID:EPDNEW_M14204
Type:initiation region
Name:Smarcb1_1
Description:Mus musculus SWI/SNF related, matrix associated, actin dependentregulator of chromatin, subfamily b, member 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14203  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381075,921,578 - 75,921,638EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1328366 AgrOrtholog
Ensembl Genes ENSMUSG00000000902 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000000925 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112463 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115388 UniProtKB/TrEMBL
  ENSMUSP00000123093 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000925 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000121304 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000140388 UniProtKB/TrEMBL
  ENSMUST00000146555 UniProtKB/TrEMBL
InterPro Sfh1/SNF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20587 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1328366 ENTREZGENE
NCBI Gene 20587 ENTREZGENE
Pfam SNF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Smarcb1 PhenoGen
PIRSF SWI_SNF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RDC4_MOUSE UniProtKB/TrEMBL
  F6U415_MOUSE UniProtKB/TrEMBL
  Q3UDA4 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZWP4 ENTREZGENE, UniProtKB/TrEMBL
  Q9ESU0_MOUSE UniProtKB/TrEMBL
  Q9ESU1_MOUSE UniProtKB/TrEMBL
  Q9JJD1_MOUSE UniProtKB/TrEMBL
  Q9Z0H3 ENTREZGENE, UniProtKB/Swiss-Prot