Mir30b (microRNA 30b) - Rat Genome Database
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Gene: Mir30b (microRNA 30b) Mus musculus
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Symbol: Mir30b
Name: microRNA 30b
RGD ID: 1607660
MGI Page MGI
Description: Is expressed in gut; limb; and liver. Orthologous to human MIR30B (microRNA 30b).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: mir-30b; Mirn; Mirn30b; mmu-mir-3; mmu-mir-30b
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,209,264 - 68,209,359 (-)NCBIGRCm39mm39
GRCm39 Ensembl1568,209,264 - 68,209,359 (-)Ensembl
GRCm381568,337,415 - 68,337,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,337,415 - 68,337,510 (-)EnsemblGRCm38mm10GRCm38
MGSCv371568,168,977 - 68,169,072 (-)NCBIGRCm37mm9NCBIm37
Celera1569,853,459 - 69,853,554 (-)NCBICelera
Cytogenetic Map15D2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12007417   PMID:15538371   PMID:16369549   PMID:16381832   PMID:16882971   PMID:17028171   PMID:17369397   PMID:17604727   PMID:17936263   PMID:18452032   PMID:18762567   PMID:19185580  
PMID:19188439   PMID:19416898   PMID:20215419   PMID:20413612   PMID:20708584   PMID:20944551   PMID:21037258   PMID:21267068   PMID:21643937   PMID:21822254   PMID:22227196   PMID:23029204  
PMID:23646144   PMID:24006456   PMID:24205035   PMID:24309499   PMID:25301066   PMID:25576051   PMID:25689854   PMID:25763824   PMID:25858512   PMID:26107383   PMID:26590946   PMID:26681446  
PMID:27032651   PMID:27182160   PMID:27489163   PMID:27941314   PMID:30087332   PMID:30879769   PMID:31170401   PMID:31199852   PMID:31539668   PMID:32643523  


Genomics

Comparative Map Data
Mir30b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,209,264 - 68,209,359 (-)NCBIGRCm39mm39
GRCm39 Ensembl1568,209,264 - 68,209,359 (-)Ensembl
GRCm381568,337,415 - 68,337,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,337,415 - 68,337,510 (-)EnsemblGRCm38mm10GRCm38
MGSCv371568,168,977 - 68,169,072 (-)NCBIGRCm37mm9NCBIm37
Celera1569,853,459 - 69,853,554 (-)NCBICelera
Cytogenetic Map15D2NCBI
MIR30B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl8134,800,520 - 134,800,607 (-)EnsemblGRCh38hg38GRCh38
GRCh388134,800,520 - 134,800,607 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh378135,812,763 - 135,812,850 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368135,881,944 - 135,882,031 (-)NCBINCBI36hg18NCBI36
Celera8131,985,504 - 131,985,591 (-)NCBI
Cytogenetic Map8q24.22NCBI
HuRef8131,128,460 - 131,128,547 (-)NCBIHuRef
CHM1_18135,854,881 - 135,854,968 (-)NCBICHM1_1
Mir30b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27100,132,589 - 100,132,675 (-)NCBI
Rnor_6.0 Ensembl7109,282,658 - 109,282,752 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07109,282,662 - 109,282,747 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera796,643,845 - 96,643,931 (-)NCBICelera
Cytogenetic Map7q34NCBI
MIR30B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1330,906,038 - 30,906,097 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11330,906,038 - 30,906,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
MIR30B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl46,952,794 - 6,952,869 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.146,952,794 - 6,952,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,717,643 - 6,717,718 (+)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15344490771325689Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined346021278717086Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined346021278717086Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined346021278717086Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15346021278717086Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15346021278717086Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15610000068400000Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15610000071600000Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15610000072600000Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15610000076000000Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15610000076500000Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15610000078800000Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15610000086800000Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156100000100900000Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15690000076000000Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15690000076000000Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15690000084700000Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927293679590561Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800000102100000Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930000076200000Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1301324Cdif_mcolor difference (mouse)Not determined153611251070112623Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800000086800000Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153923699973237197Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4031362672500731Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154230000095600000Mouse
1300644Fob3_mF-line obesity QTL 3 (mouse)11.3Not determined154414443889377036Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154468146478681588Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154498729278987432Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154570000069300000Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154651779780517996Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154651779780517996Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154743448581434630Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154753774781537842Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154850000098500000Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548500000101800000Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154859351382593647Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155114129876910293Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155128885985288984Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155154651285546662Mouse
10412067Pain2_mpain 2 (mouse)Not determined155177349085773777Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155181398385822600Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155193466685934802Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155370000089700000Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155491728088917280Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155690000087800000Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155724515691245304Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155724515691245304Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156170000095700000Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156327970297279794Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156351779781202235Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156492762598927745Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156545237799456827Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156564117599641298Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567386497101386646Mouse

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Aicdammu-miR-30b-5pMirtarbaseexternal_infoqRT-PCRNon-Functional MTI (Weak)18762567
Casp3mmu-miR-30b-5pOncomiRDBexternal_infoNANA22964638
Ccne2mmu-miR-30b-5pOncomiRDBexternal_infoNANA22384020
Bcl2l11mmu-miR-30b-5pOncomiRDBexternal_infoNANA22157681
Galnt7mmu-miR-30b-5pOncomiRDBexternal_infoNANA21741600
Mybmmu-miR-30b-5pOncomiRDBexternal_infoNANA21187425
Ube2immu-miR-30b-5pOncomiRDBexternal_infoNANA20498642

Predicted Targets
Summary Value
Count of predictions:25022
Count of gene targets:9839
Count of transcripts:16265
Interacting mature miRNAs:mmu-miR-30b-3p, mmu-miR-30b-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083542
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1568,337,415 - 68,337,510 (-)Ensembl
RefSeq Acc Id: NR_029534
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,209,264 - 68,209,359 (-)NCBI
GRCm381568,337,415 - 68,337,510 (-)ENTREZGENE
MGSCv371568,168,977 - 68,169,072 (-)RGD
Celera1569,853,459 - 69,853,554 (-)RGD
cM Map15 ENTREZGENE
Sequence:
Promoters
RGD ID:8683896
Promoter ID:EPDNEW_M19979
Type:single initiation site
Name:Mir30b_1
Description:Mus musculus microRNA 30b , microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381568,337,429 - 68,337,489EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2676908 AgrOrtholog
Ensembl Genes ENSMUSG00000065476 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083542 ENTREZGENE
MGD MGI:2676908 ENTREZGENE
miRBase MI0000145 ENTREZGENE
NCBI Gene 387226 ENTREZGENE
PhenoGen Mir30b PhenoGen
RNAcentral URS00005165DA RNACentral
  URS00005E5FB5 RNACentral
  URS000075C557 RNACentral