Cd46 (CD46 antigen, complement regulatory protein) - Rat Genome Database

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Gene: Cd46 (CD46 antigen, complement regulatory protein) Mus musculus
Analyze
Symbol: Cd46
Name: CD46 antigen, complement regulatory protein
RGD ID: 736683
MGI Page MGI
Description: Predicted to enable cadherin binding activity. Predicted to contribute to endopeptidase activity. Predicted to be involved in several processes, including positive regulation of T cell activation; positive regulation of macromolecule metabolic process; and regulation of signal transduction. Predicted to act upstream of or within single fertilization. Predicted to be located in several cellular components, including Golgi apparatus; basolateral plasma membrane; and inner acrosomal membrane. Predicted to be active in plasma membrane. Is expressed in testis. Used to study age related macular degeneration. Human ortholog(s) of this gene implicated in several diseases, including atypical hemolytic-uremic syndrome; hemolytic-uremic syndrome; meningococcal meningitis; multiple sclerosis; and pre-eclampsia. Orthologous to human CD46 (CD46 molecule); PARTICIPATES IN coagulation cascade pathway; complement system pathway; measles pathway; INTERACTS WITH bisphenol A; paracetamol; (S)-nicotine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Mc; Mcp; membrane cofactor protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,721,279 - 194,781,149 (-)NCBIGRCm39mm39
GRCm39 Ensembl1194,719,134 - 194,774,557 (-)Ensembl
GRCm381195,038,971 - 195,098,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,036,826 - 195,092,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,868,094 - 196,918,442 (-)NCBIGRCm37mm9NCBIm37
MGSCv361196,742,624 - 196,792,972 (-)NCBImm8
Celera1201,941,710 - 201,991,369 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Alvarez-Lafuente R, etal., Acta Neurol Scand. 2009 Oct;120(4):246-50. Epub 2009 May 13.
2. Alvarez-Lafuente R, etal., Mult Scler. 2011 May;17(5):513-20. Epub 2010 Dec 21.
3. Assem MM, etal., J Egypt Natl Canc Inst. 2005 Mar;17(1):29-34.
4. Biswas B, etal., Lupus. 2012 Apr;21(5):517-25. Epub 2012 Jan 13.
5. Bjorge L, etal., Br J Cancer. 2005 Mar 14;92(5):895-905.
6. Blok VT, etal., Lab Invest. 2000 Mar;80(3):335-44.
7. Canova C, etal., J Neuroinflammation. 2006 Sep 2;3:22.
8. Dragon-Durey MA and Fremeaux-Bacchi V, Springer Semin Immunopathol. 2005 Nov;27(3):359-74. Epub 2005 Nov 11.
9. Fang CJ, etal., Blood. 2008 Jan 15;111(2):624-32. Epub 2007 Oct 3.
10. Grumelli S, etal., PLoS One. 2011 May 6;6(5):e18785.
11. Hofman P, etal., Breast Cancer Res Treat. 1994;32(2):213-9.
12. Johansson L, etal., Science. 2003 Jul 18;301(5631):373-5.
13. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
14. Kim YO, etal., Yonsei Med J. 2007 Jun 30;48(3):517-25.
15. Lewis DA, etal., Thromb Res. 2015 Apr;135(4):659-65. doi: 10.1016/j.thromres.2015.02.003. Epub 2015 Feb 7.
16. Lokki AI, etal., PLoS One. 2015 Feb 24;10(2):e0117840. doi: 10.1371/journal.pone.0117840. eCollection 2015.
17. Madjd Z, etal., Cancer Immunol Immunother. 2005 Feb;54(2):149-56. Epub 2004 Sep 16.
18. Maga TK, etal., Hum Mutat. 2010 Jun;31(6):E1445-60. doi: 10.1002/humu.21256.
19. Marie JC, etal., Nat Immunol. 2002 Jul;3(7):659-66. Epub 2002 Jun 10.
20. MGD and Homologene mouse data transfer
21. MGD data from the GO Consortium
22. MGD IEA
23. Miwa T, etal., Immunogenetics 1998 Nov-Dec;48(6):363-71.
24. Murray KP, etal., Gynecol Oncol. 2000 Feb;76(2):176-82.
25. Noris M, etal., Clin J Am Soc Nephrol. 2010 Oct;5(10):1844-59. doi: 10.2215/CJN.02210310. Epub 2010 Jul 1.
26. Noris M, etal., Lancet. 2003 Nov 8;362(9395):1542-7.
27. Nuutila J, etal., Hum Immunol. 2013 May;74(5):522-30. doi: 10.1016/j.humimm.2013.01.011. Epub 2013 Jan 29.
28. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
29. OMIM Disease Annotation Pipeline
30. Ong HT, etal., Exp Hematol. 2006 Jun;34(6):713-20.
31. Peng KW, etal., Cancer Res. 2002 Aug 15;62(16):4656-62.
32. Pipeline to import KEGG annotations from KEGG into RGD
33. RGD automated import pipeline
34. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
35. RGD automated import pipeline for gene-chemical interactions
36. Richards A, etal., Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12966-71. Epub 2003 Oct 17.
37. Salmon JE, etal., PLoS Med. 2011 Mar;8(3):e1001013. Epub 2011 Mar 22.
38. Simpson KL, etal., Am J Pathol. 1997 Nov;151(5):1455-67.
39. Surowiak P, etal., Anticancer Res. 2006 Nov-Dec;26(6C):4943-8.
40. Wirstlein PK, etal., Folia Histochem Cytobiol. 2012 Oct 8;50(3):460-7. doi: 10.5603/19758.
41. Yoshida H, etal., J Med Microbiol. 2011 Dec;60(Pt 12):1860-8. Epub 2011 Aug 18.
42. Zhang C, etal., World J Gastroenterol. 2005 Nov 21;11(43):6770-4.
Additional References at PubMed
PMID:9461505   PMID:10349636   PMID:10627548   PMID:10630288   PMID:10960475   PMID:11023821   PMID:11042159   PMID:11076861   PMID:11422193   PMID:11726285   PMID:12171934   PMID:12477932  
PMID:12640142   PMID:12724329   PMID:12914820   PMID:14670299   PMID:15920733   PMID:15972677   PMID:16002709   PMID:16141072   PMID:16141073   PMID:21106855   PMID:21873635   PMID:25019227  
PMID:26161984   PMID:27295359   PMID:32290105   PMID:33688034  


Genomics

Comparative Map Data
Cd46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,721,279 - 194,781,149 (-)NCBIGRCm39mm39
GRCm39 Ensembl1194,719,134 - 194,774,557 (-)Ensembl
GRCm381195,038,971 - 195,098,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,036,826 - 195,092,249 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,868,094 - 196,918,442 (-)NCBIGRCm37mm9NCBIm37
MGSCv361196,742,624 - 196,792,972 (-)NCBImm8
Celera1201,941,710 - 201,991,369 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.41NCBI
CD46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1207,752,054 - 207,795,513 (+)EnsemblGRCh38hg38GRCh38
GRCh381207,752,038 - 207,795,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371207,925,383 - 207,968,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,992,025 - 206,035,481 (+)NCBINCBI36hg18NCBI36
Build 341204,313,796 - 204,357,253NCBI
Celera1181,155,844 - 181,199,337 (+)NCBI
Cytogenetic Map1q32.2NCBI
HuRef1178,599,655 - 178,643,144 (+)NCBIHuRef
CHM1_11209,197,783 - 209,241,259 (+)NCBICHM1_1
Cd46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.213106,575,586 - 106,606,325 (-)NCBI
Rnor_6.0 Ensembl13113,787,349 - 113,817,995 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013113,786,525 - 113,818,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013118,334,938 - 118,366,928 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413110,972,812 - 111,003,407 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113111,166,859 - 111,197,455 (-)NCBI
Celera13105,999,615 - 106,030,131 (-)NCBICelera
Cytogenetic Map13q27NCBI
Cd46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540643,002,817 - 43,034,555 (+)NCBIChiLan1.0ChiLan1.0
CD46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11188,138,616 - 188,182,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1188,031,758 - 188,182,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01183,330,423 - 183,373,916 (+)NCBIMhudiblu_PPA_v0panPan3
LOC102156626
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,552,121 - 6,581,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha76,114,430 - 6,144,443 (+)NCBI
ROS_Cfam_1.076,240,211 - 6,268,997 (+)NCBI
UMICH_Zoey_3.176,173,438 - 6,203,217 (+)NCBI
UNSW_CanFamBas_1.076,275,610 - 6,305,657 (+)NCBI
UU_Cfam_GSD_1.076,316,510 - 6,346,562 (+)NCBI
Cd46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934467,898,802 - 67,934,998 (-)NCBI
SpeTri2.0NW_0049365575,136,784 - 5,175,543 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.19135,025,439 - 135,078,910 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29148,564,569 - 148,568,279 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,650,825 - 21,693,898 (-)NCBI
ChlSab1.1 Ensembl2521,655,969 - 21,693,878 (-)Ensembl
Vero_WHO_p1.0NW_02366605522,261,845 - 22,304,942 (-)NCBI
Cd46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248074,040,639 - 4,074,631 (-)NCBI

Position Markers
Mcp  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381195,085,414 - 195,086,124UniSTSGRCm38
MGSCv371196,911,608 - 196,912,318UniSTSGRCm37
Celera1201,984,568 - 201,985,278UniSTS
Cytogenetic Map1H6UniSTS
cM Map1106.6UniSTS
Cd46  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H6UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172571254195471971Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167730317195471971Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167730317195471971Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1168222387195471971Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175529010195471971Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167730317195471971Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1172250913195471971Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1166092111195471971Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168481626195471971Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170647303195471971Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161373696195373830Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172571254195471971Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172571254195471971Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172800000195471971Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172900000195471971Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:624
Count of miRNA genes:306
Interacting mature miRNAs:328
Transcripts:ENSMUST00000016637, ENSMUST00000159563, ENSMUST00000160817, ENSMUST00000161772, ENSMUST00000162614, ENSMUST00000162650, ENSMUST00000162951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_132621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004940718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_373889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB001566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB010919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB014480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB022600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB025974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL513470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC150660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE634816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000159563   ⟹   ENSMUSP00000123901
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1195,041,900 - 195,092,225 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1195,041,835 - 195,069,114 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162650   ⟹   ENSMUSP00000123931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1195,036,826 - 195,092,249 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1195,041,923 - 195,083,075 (-)Ensembl
RefSeq Acc Id: NM_010778   ⟹   NP_034908
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,723,546 - 194,774,556 (-)NCBI
GRCm381195,041,238 - 195,092,248 (-)NCBI
MGSCv371196,868,094 - 196,918,442 (-)RGD
Celera1201,941,710 - 201,991,369 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_132621
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,723,546 - 194,774,556 (-)NCBI
GRCm381195,041,238 - 195,092,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497234   ⟹   XP_006497297
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,724,329 - 194,774,554 (-)NCBI
GRCm381195,042,021 - 195,092,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497235   ⟹   XP_006497298
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,724,329 - 194,774,554 (-)NCBI
GRCm381195,042,021 - 195,092,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497236   ⟹   XP_006497299
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,724,329 - 194,781,149 (-)NCBI
GRCm381195,042,021 - 195,098,784 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497237   ⟹   XP_006497300
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,724,329 - 194,771,079 (-)NCBI
GRCm381195,042,021 - 195,088,778 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238930   ⟹   XP_011237232
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,760,058 - 194,774,554 (-)NCBI
GRCm381195,077,750 - 195,092,250 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036162529   ⟹   XP_036018422
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,764,314 - 194,774,554 (-)NCBI
RefSeq Acc Id: XR_001783154
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,721,279 - 194,774,554 (-)NCBI
GRCm381195,038,971 - 195,092,250 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004940718
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,721,279 - 194,774,554 (-)NCBI
RefSeq Acc Id: XR_373888
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,721,279 - 194,774,554 (-)NCBI
GRCm381195,038,971 - 195,092,250 (-)NCBI
Sequence:
RefSeq Acc Id: XR_373889
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391194,750,435 - 194,774,554 (-)NCBI
GRCm381195,068,127 - 195,092,250 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034908   ⟸   NM_010778
- Peptide Label: precursor
- UniProtKB: O88174 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497299   ⟸   XM_006497236
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006497298   ⟸   XM_006497235
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006497297   ⟸   XM_006497234
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006497300   ⟸   XM_006497237
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011237232   ⟸   XM_011238930
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSMUSP00000123901   ⟸   ENSMUST00000159563
RefSeq Acc Id: ENSMUSP00000123931   ⟸   ENSMUST00000162650
RefSeq Acc Id: XP_036018422   ⟸   XM_036162529
- Peptide Label: isoform X4
Protein Domains
Sushi

Promoters
RGD ID:6876194
Promoter ID:EPDNEW_M1548
Type:single initiation site
Name:Cd46_1
Description:Mus musculus CD46 antigen, complement regulatory protein , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381195,092,248 - 195,092,308EPDNEW
RGD ID:6817486
Promoter ID:MM_KWN:3384
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000110814,   NM_010778
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,918,456 - 196,919,232 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1203290 AgrOrtholog
Ensembl Genes ENSMUSG00000016493 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000123901 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000123931 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000159563 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000162650 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro CD46 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17221 UniProtKB/Swiss-Prot
MGD MGI:1203290 ENTREZGENE
NCBI Gene 17221 ENTREZGENE
Pfam Sushi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cd46 PhenoGen
PIRSF TLX_CD46 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SUSHI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CCP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57535 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1X9_MOUSE UniProtKB/TrEMBL
  B2RWQ6_MOUSE UniProtKB/TrEMBL
  MCP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TR83_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q9R0R9 UniProtKB/Swiss-Prot